Rmu_sc0002774.1_g000005

Domain of unknown function (DUF4504)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002774.1
OG0012507
Physical Location & Seq
Forward (+)
13743 .. 20506
6764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002774.1_g000005.1.cds

Sequence Viewer

Length: 945 bp
atggaaaacgagaaggaattctcaggtgaagttgcggagttggaggaagcaataaacgtgttggattcatccctctctcttatcaaatggcgactcaagtattcaagcagacgtcgacttgagatagatattctggccttgtgtactggaatgaggccagtgataatggtagactatggtggaaagatgcctgaactgcaggagaggctctgcaatcttttgaaactttgtcgaaagagctcaaccatttttgagcagctgagagtaatggttatagaagaaatgatatatttggtgcacattagtgaacttgctgattatgttaggtcaagcttgaactctgaagcaaagcttctctttgtggaccttgaacatgatcctccaaagatgataaaacaagcggagaaacaccaactaggtgtgcagcttatatcaattcagaagttgttctctttaaattttccttctggtggaatgaaagatgacacatcgtcatcgtcatctcataatatagatatggttgattctaaacctgccagaaatgaactgatctcttctcactcctccgagattattgatttcagtacgtgcatgcaagatactcaggtcaccttgccaacattaaatggatggcttcttggttatccagtggtgtacttgttcagcaaggagcatgtagctgatgctgtttataatctttctatgaagtatcttcatatttatacaatatcagtctgcaggaatgggacccccaataaacaatctgagctagaagaactcttgagtttctcggtgccttacggtttaagcataagagggagcaaagaagaatgggccgaggcattgttggctcatctgcaggagaagtgggaaagatgcaagaatgcttggaggtctttgcagttggaggttagtgaattaaatccacaggccattgtgttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4504

Protein Analysis

314

Amino Acids

35.83

Weight (kDa)

5.39

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59490 AT3G59490 AT3G59490 AT3G59490
fragaria_vesca FvH4_4g10850 FvH4_4g10850
malus_domestica MD04G1042500.v1.1
prunus_persica Prupe.1G196900_v2.0.a1
pyrus_communis pycom04g03740
rosa_chinensis RchiOBHm_Chr4g0406631
rosa_multiflora Rmu_sc0002774.1_g000005
rosa_roxburghii Rroxscaffold_5G00351470
rosa_rugosa Rorug04G0072400 Rorug04G0072500
rosa_samantha Rh4AG139700 Rh4BG136700 Rh4CG146900 Rh4DG133900
rosa_wichuraiana Rw4G011380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 693
AatII GACGTC 1 cut(s) 115
Acc36I ACCTGC 1 cut(s) 541
AccB1I GGYRCC 1 cut(s) 793
AccI GTMKAC 2 cut(s) 115, 171
AciI CCGC 2 cut(s) 35, 401
AclWI GGATC 1 cut(s) 371
AcsI RAATTY 2 cut(s) 17, 457
AcuI CTGAAG 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 112
AfaI GTAC 3 cut(s) 145, 586, 656
AfiI CCNNNNNNNGG 1 cut(s) 470
AflIII ACRYGT 1 cut(s) 57
AgsI TTSAA 4 cut(s) 105, 223, 337, 371
AhdI GACNNNNNGTC 1 cut(s) 490
AleI CACNNNNGTG 1 cut(s) 303
AluBI AGCT 7 cut(s) 240, 259, 333, 352, 427, 680, 769
AluI AGCT 7 cut(s) 240, 259, 333, 352, 427, 680, 769
Alw21I GWGCWC 2 cut(s) 242, 300
Alw44I GTGCAC 1 cut(s) 296
AlwI GGATC 1 cut(s) 371
AoxI GGCC 4 cut(s) 135, 155, 834, 930
ApaLI GTGCAC 1 cut(s) 296
ApeKI GCWGC 2 cut(s) 256, 424
ApoI RAATTY 2 cut(s) 17, 457
Asp700I GAANNNNTTC 2 cut(s) 17, 446
AspS9I GGNCC 3 cut(s) 364, 747, 834
AsuHPI GGTGA 2 cut(s) 38, 601
AvaII GGWCC 2 cut(s) 364, 747
BaeGI GKGCMC 1 cut(s) 300
BaeI ACNNNNGTAYC 2 cut(s) 591, 624
BanI GGYRCC 1 cut(s) 793
BanII GRGCYC 1 cut(s) 242
Bbv12I GWGCWC 2 cut(s) 242, 300
BbvI GCAGC 2 cut(s) 268, 436
BccI CCATC 1 cut(s) 624
BfaI CTAG 2 cut(s) 416, 770
BfmI CTRYAG 3 cut(s) 197, 736, 857
BfuAI ACCTGC 1 cut(s) 541
BisI GCNGC 2 cut(s) 257, 425
BlsI GCNGC 2 cut(s) 258, 426
Bme18I GGWCC 2 cut(s) 364, 747
BmeRI GACNNNNNGTC 1 cut(s) 490
BmgT120I GGNCC 3 cut(s) 364, 747, 834
BmiI GGNNCC 3 cut(s) 748, 749, 795
BmsI GCATC 3 cut(s) 177, 673, 866
BpuEI CTTGAG 3 cut(s) 80, 140, 802
BsaAI YACGTR 1 cut(s) 588
BsaHI GRCGYC 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 837
Bsc4I CCNNNNNNNGG 1 cut(s) 470
Bse1I ACTGG 3 cut(s) 151, 158, 647
BseDI CCNNGG 1 cut(s) 837
BseGI GGATG 2 cut(s) 68, 635
BseLI CCNNNNNNNGG 1 cut(s) 470
BseMII CTCAG 4 cut(s) 36, 251, 617, 756
BseNI ACTGG 3 cut(s) 151, 158, 647
BseRI GAGGAG 1 cut(s) 553
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 2 cut(s) 268, 436
BsgI GTGCAG 1 cut(s) 443
BshFI GGCC 4 cut(s) 137, 157, 836, 932
BshNI GGYRCC 1 cut(s) 793
BsiHKAI GWGCWC 2 cut(s) 242, 300
BslFI GGGAC 1 cut(s) 760
BslI CCNNNNNNNGG 1 cut(s) 470
BsmFI GGGAC 1 cut(s) 760
BsmI GAATGC 1 cut(s) 889
BsnI GGCC 4 cut(s) 137, 157, 836, 932
Bsp1286I GDGCHC 2 cut(s) 242, 300
Bsp143I GATC 2 cut(s) 376, 549
BspACI CCGC 2 cut(s) 35, 401
BspANI GGCC 4 cut(s) 137, 157, 836, 932
BspCNI CTCAG 4 cut(s) 35, 252, 616, 757
BspLI GGNNCC 3 cut(s) 748, 749, 795
BspMAI CTGCAG 3 cut(s) 201, 740, 861
BspMI ACCTGC 1 cut(s) 541
BspPI GGATC 1 cut(s) 371
BspT107I GGYRCC 1 cut(s) 793
BsrI ACTGG 3 cut(s) 151, 158, 647
BssECI CCNNGG 1 cut(s) 837
BssMI GATC 2 cut(s) 376, 549
BssNI GRCGYC 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 803
Bst6I CTCTTC 1 cut(s) 559
BstACI GRCGYC 1 cut(s) 112
BstBAI YACGTR 1 cut(s) 588
BstC8I GCNNGC 1 cut(s) 593
BstDEI CTNAG 4 cut(s) 22, 260, 603, 765
BstEII GGTNACC 1 cut(s) 607
BstF5I GGATG 2 cut(s) 68, 635
BstKTI GATC 2 cut(s) 379, 552
BstMBI GATC 2 cut(s) 376, 549
BstMWI GCNNNNNNNGC 3 cut(s) 196, 205, 848
BstNSI RCATGY 2 cut(s) 595, 677
BstPI GGTNACC 1 cut(s) 607
BstSFI CTRYAG 3 cut(s) 197, 736, 857
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 2 cut(s) 268, 436
BsuRI GGCC 4 cut(s) 137, 157, 836, 932
BtsCI GGATG 2 cut(s) 68, 635
BtsIMutI CAGTG 2 cut(s) 165, 654
BveI ACCTGC 1 cut(s) 541
Cac8I GCNNGC 1 cut(s) 593
Cfr13I GGNCC 3 cut(s) 364, 747, 834
Csp6I GTAC 3 cut(s) 144, 585, 655
CviAII CATG 3 cut(s) 374, 592, 674
CviQI GTAC 3 cut(s) 144, 585, 655
DdeI CTNAG 4 cut(s) 22, 260, 603, 765
DpnI GATC 2 cut(s) 378, 551
DpnII GATC 2 cut(s) 376, 549
DraI TTTAAA 1 cut(s) 456
DriI GACNNNNNGTC 1 cut(s) 490
Eam1104I CTCTTC 1 cut(s) 559
Eam1105I GACNNNNNGTC 1 cut(s) 490
EarI CTCTTC 1 cut(s) 559
Ecl136II GAGCTC 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 242
Eco47I GGWCC 2 cut(s) 364, 747
Eco53kI GAGCTC 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 363
Eco91I GGTNACC 1 cut(s) 607
EcoICRI GAGCTC 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 747
EcoO65I GGTNACC 1 cut(s) 607
EcoRI GAATTC 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 242
FaeI CATG 3 cut(s) 377, 595, 677
FalI AAGNNNNNCTT 4 cut(s) 336, 368, 341, 373
FaqI GGGAC 1 cut(s) 760
FatI CATG 3 cut(s) 373, 591, 673
FblI GTMKAC 2 cut(s) 115, 171
Fnu4HI GCNGC 2 cut(s) 257, 425
FokI GGATG 2 cut(s) 55, 642
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 2 cut(s) 257, 425
FspBI CTAG 2 cut(s) 416, 770
GluI GCNGC 2 cut(s) 257, 425
HaeIII GGCC 4 cut(s) 137, 157, 836, 932
Hin1I GRCGYC 1 cut(s) 112
Hin1II CATG 3 cut(s) 377, 595, 677
HincII GTYRAC 1 cut(s) 116
HindII GTYRAC 1 cut(s) 116
HindIII AAGCTT 2 cut(s) 331, 350
HinfI GANTC 3 cut(s) 65, 93, 524
HphI GGTGA 2 cut(s) 38, 601
Hpy166II GTNNAC 7 cut(s) 116, 144, 172, 298, 308, 364, 655
Hpy188I TCNGA 4 cut(s) 343, 441, 568, 766
Hpy188III TCNNGA 1 cut(s) 781
Hpy8I GTNNAC 7 cut(s) 116, 144, 172, 298, 308, 364, 655
Hpy99I CGWCG 1 cut(s) 117
HpyAV CCTTC 2 cut(s) 7, 474
HpyCH4III ACNGT 1 cut(s) 803
HpyCH4IV ACGT 3 cut(s) 57, 112, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 205, 848
HpyF3I CTNAG 4 cut(s) 22, 260, 603, 765
HpySE526I ACGT 3 cut(s) 57, 112, 587
Hsp92I GRCGYC 1 cut(s) 112
Hsp92II CATG 3 cut(s) 377, 595, 677
KflI GGGWCCC 1 cut(s) 747
Kzo9I GATC 2 cut(s) 376, 549
LmnI GCTCC 2 cut(s) 670, 819
Lsp1109I GCAGC 2 cut(s) 268, 436
LweI GCATC 3 cut(s) 177, 673, 866
MaeI CTAG 2 cut(s) 416, 770
MaeII ACGT 3 cut(s) 57, 112, 587
MaeIII GTNAC 1 cut(s) 607
MalI GATC 2 cut(s) 378, 551
MboI GATC 2 cut(s) 376, 549
MboII GAAGA 5 cut(s) 290, 546, 704, 785, 839
MhlI GDGCHC 2 cut(s) 242, 300
MluCI AATT 4 cut(s) 17, 435, 457, 917
MlyI GAGTC 1 cut(s) 87
MmeI TCCRAC 3 cut(s) 21, 42, 885
MroXI GAANNNNTTC 2 cut(s) 17, 446
MseI TTAA 4 cut(s) 455, 623, 806, 920
MslI CAYNNNNRTG 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 259
Mva1269I GAATGC 1 cut(s) 889
MwoI GCNNNNNNNGC 3 cut(s) 196, 205, 848
NdeII GATC 2 cut(s) 376, 549
NlaIII CATG 3 cut(s) 377, 595, 677
NlaIV GGNNCC 3 cut(s) 748, 749, 795
NmeAIII GCCGAG 1 cut(s) 862
NmuCI GTSAC 1 cut(s) 607
NspI RCATGY 2 cut(s) 595, 677
OliI CACNNNNGTG 1 cut(s) 303
PaeI GCATGC 1 cut(s) 595
PctI GAATGC 1 cut(s) 889
PdmI GAANNNNTTC 2 cut(s) 17, 446
PfeI GAWTC 2 cut(s) 65, 524
PkrI GCNGC 2 cut(s) 258, 426
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
Ppu21I YACGTR 1 cut(s) 588
PpuMI RGGWCCY 1 cut(s) 747
PsiI TTATAA 1 cut(s) 693
Psp124BI GAGCTC 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 747
PspEI GGTNACC 1 cut(s) 607
PspN4I GGNNCC 3 cut(s) 748, 749, 795
PspPI GGNCC 3 cut(s) 364, 747, 834
PspPPI RGGWCCY 1 cut(s) 747
PstI CTGCAG 3 cut(s) 201, 740, 861
PvuII CAGCTG 1 cut(s) 259
RsaI GTAC 3 cut(s) 145, 586, 656
RsaNI GTAC 3 cut(s) 144, 585, 655
RseI CAYNNNNRTG 1 cut(s) 303
SacI GAGCTC 1 cut(s) 242
SalI GTCGAC 1 cut(s) 114
SaqAI TTAA 4 cut(s) 455, 623, 806, 920
SatI GCNGC 2 cut(s) 257, 425
Sau3AI GATC 2 cut(s) 376, 549
Sau96I GGNCC 3 cut(s) 364, 747, 834
SchI GAGTC 1 cut(s) 87
SduI GDGCHC 2 cut(s) 242, 300
SfaNI GCATC 3 cut(s) 177, 673, 866
SfcI CTRYAG 3 cut(s) 197, 736, 857
SinI GGWCC 2 cut(s) 364, 747
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 3 cut(s) 95, 119, 781
SmoI CTYRAG 3 cut(s) 95, 119, 781
SphI GCATGC 1 cut(s) 595
Sse9I AATT 4 cut(s) 17, 435, 457, 917
SsiI CCGC 2 cut(s) 35, 401
SspMI CTAG 2 cut(s) 416, 770
SstI GAGCTC 1 cut(s) 242
TaaI ACNGT 1 cut(s) 803
TaiI ACGT 3 cut(s) 60, 115, 590
TaqI TCGA 2 cut(s) 115, 232
TasI AATT 4 cut(s) 17, 435, 457, 917
TatI WGTACW 2 cut(s) 143, 654
TfiI GAWTC 2 cut(s) 65, 524
Tru1I TTAA 4 cut(s) 455, 623, 806, 920
Tru9I TTAA 4 cut(s) 455, 623, 806, 920
TscAI CASTG 2 cut(s) 165, 654
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 2 cut(s) 256, 424
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 5 cut(s) 57, 491, 558, 704, 719
TspRI CASTG 2 cut(s) 165, 654
VneI GTGCAC 1 cut(s) 296
VpaK11BI GGWCC 2 cut(s) 364, 747
XapI RAATTY 2 cut(s) 17, 457
XceI RCATGY 2 cut(s) 595, 677
XmiI GTMKAC 2 cut(s) 115, 171
XmnI GAANNNNTTC 2 cut(s) 17, 446
XspI CTAG 2 cut(s) 416, 770
ZraI GACGTC 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.