Rorug04G0072400

Domain of unknown function (DUF4504)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012507
Physical Location & Seq
Reverse (-)
11141425 .. 11143747
2323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0072400.1

Sequence Viewer

Length: 792 bp
ATGCACTCGCCGAAGCCTGGAACGAGTTGCGTGGACGTTAACCTAGCTCCGGAGATTCGAATTTCACGAGAATGTTCTTCTCCGACGATTTGTCGAATCGGAAGCACGTGGATTTGGGGGGACGGAGTACGAAGGATAGGGATGAAGGATACGGCCGCCAACCGCGCTGCCGTATCTTCTCCACTGCAGCGAAGGAGGACCATGTCTGCTCTCAAAGCCCGAAGCTCCCTCGTCGCCGCTCTCGCCACCCAAGCCTCCTCCGTCTCCCAGGAACATAAATTTTTACTCGATTTGGCCAAGTACGTCTTCCCCAAGCAGTTCGAGGCTCGGACTCTCGAGGAAGCTCTCATGTCAGTTGATGGGGGAAACTTCCTGAGGAGCTTCACCATTTCAGCTTCTGCTTCATCTAATGGGTCTCCTCCTTTGAGTTCTAGTGGTAGTAGTGGTGGGGGTGGCGGTCCTGTGATATTGGAGCTTCCTCTTGATAAGATAAGGAGGCCTTTGATGAGAACCAGAACTAATGATCCGGTCAAGGTTCAAGAACTGATGGATAGCATAAGTGAAATTGGCCTCCAAGTACCTATTGATGTGCTTGAGGTCGATGGAGTTTATTATGTGAGACACAAAGATTACAGAAAAGAAACTTTATTCAAGACCGAATTTGTTTCTCTGGATGTCATCGCTATGAAGCTCACCAGCGTCTTGGGCTCCCAACAATACGTTGCAAAATTCGACGTGGGACAAAAGAAACTCTCCGGCATCACCTCCGCTGAGTTTGGATTAAGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4504

Protein Analysis

263

Amino Acids

28.57

Weight (kDa)

9.38

Isoelectric Point (pI)

57.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59490 AT3G59490 AT3G59490 AT3G59490
fragaria_vesca FvH4_4g10850 FvH4_4g10850
malus_domestica MD04G1042500.v1.1
prunus_persica Prupe.1G196900_v2.0.a1
pyrus_communis pycom04g03740
rosa_chinensis RchiOBHm_Chr4g0406631
rosa_multiflora Rmu_sc0002774.1_g000005
rosa_roxburghii Rroxscaffold_5G00351470
rosa_rugosa Rorug04G0072400 Rorug04G0072500
rosa_samantha Rh4AG139700 Rh4BG136700 Rh4CG146900 Rh4DG133900
rosa_wichuraiana Rw4G011380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 239
AccII CGCG 1 cut(s) 165
AccIII TCCGGA 1 cut(s) 49
AciI CCGC 5 cut(s) 156, 163, 237, 456, 768
AclWI GGATC 1 cut(s) 518
AcoI YGGCCR 2 cut(s) 153, 294
AcsI RAATTY 4 cut(s) 60, 278, 659, 728
AcvI CACGTG 1 cut(s) 108
AfaI GTAC 3 cut(s) 129, 302, 579
AfiI CCNNNNNNNGG 2 cut(s) 17, 49
AgsI TTSAA 2 cut(s) 539, 652
AhdI GACNNNNNGTC 1 cut(s) 90
AjiI CACGTC 1 cut(s) 736
AjnI CCWGG 2 cut(s) 16, 267
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AloI GAACNNNNNNTCC 2 cut(s) 508, 540
AluBI AGCT 7 cut(s) 47, 225, 344, 381, 395, 475, 691
AluI AGCT 7 cut(s) 47, 225, 344, 381, 395, 475, 691
Alw26I GTCTC 3 cut(s) 268, 420, 613
AlwI GGATC 1 cut(s) 518
AlwNI CAGNNNCTG 1 cut(s) 398
Ama87I CYCGRG 1 cut(s) 335
Aor13HI TCCGGA 1 cut(s) 49
AoxI GGCC 4 cut(s) 153, 294, 497, 568
ApeKI GCWGC 2 cut(s) 167, 187
ApoI RAATTY 4 cut(s) 60, 278, 659, 728
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 2 cut(s) 198, 458
AsuHPI GGTGA 3 cut(s) 376, 685, 754
AsuII TTCGAA 1 cut(s) 58
AvaI CYCGRG 1 cut(s) 335
AvaII GGWCC 2 cut(s) 198, 458
AxyI CCTNAGG 1 cut(s) 374
BalI TGGCCA 1 cut(s) 296
BanII GRGCYC 1 cut(s) 710
BauI CACGAG 1 cut(s) 66
BbrPI CACGTG 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 298
BbvI GCAGC 2 cut(s) 154, 199
BccI CCATC 3 cut(s) 353, 541, 596
BceAI ACGGC 2 cut(s) 155, 168
BciT130I CCWGG 2 cut(s) 18, 269
BciVI GTATCC 1 cut(s) 142
BcoDI GTCTC 3 cut(s) 268, 420, 613
BfaI CTAG 2 cut(s) 44, 432
BfmI CTRYAG 1 cut(s) 185
BfuI GTATCC 1 cut(s) 142
BisI GCNGC 4 cut(s) 156, 168, 188, 237
BlsI GCNGC 4 cut(s) 157, 169, 189, 238
Bme1390I CCNGG 2 cut(s) 18, 269
Bme18I GGWCC 2 cut(s) 198, 458
BmeRI GACNNNNNGTC 1 cut(s) 90
BmeT110I CYCGRG 1 cut(s) 335
BmgBI CACGTC 1 cut(s) 736
BmgT120I GGNCC 2 cut(s) 198, 458
BmiI GGNNCC 1 cut(s) 709
BmrFI CCNGG 2 cut(s) 18, 269
BmsI GCATC 1 cut(s) 768
BpiI GAAGAC 1 cut(s) 298
Bpu14I TTCGAA 1 cut(s) 58
BpuEI CTTGAG 1 cut(s) 614
BsaAI YACGTR 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 2 cut(s) 49, 526
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 49
Bse21I CCTNAGG 1 cut(s) 374
BseAI TCCGGA 1 cut(s) 49
BseBI CCWGG 2 cut(s) 18, 269
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 2 cut(s) 147, 679
BseLI CCNNNNNNNGG 2 cut(s) 17, 49
BseMII CTCAG 2 cut(s) 365, 762
BseRI GAGGAG 3 cut(s) 247, 391, 408
BseX3I CGGCCG 1 cut(s) 153
BseXI GCAGC 2 cut(s) 154, 199
Bsh1236I CGCG 1 cut(s) 165
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 4 cut(s) 155, 296, 499, 570
BsiEI CGRYCG 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 335
BsiSI CCGG 3 cut(s) 50, 527, 756
BslFI GGGAC 2 cut(s) 134, 753
BslI CCNNNNNNNGG 2 cut(s) 17, 49
BsmAI GTCTC 3 cut(s) 268, 420, 613
BsmBI CGTCTC 1 cut(s) 268
BsmFI GGGAC 2 cut(s) 134, 753
BsnI GGCC 4 cut(s) 155, 296, 499, 570
Bso31I GGTCTC 1 cut(s) 420
BsoBI CYCGRG 1 cut(s) 335
Bsp119I TTCGAA 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 710
Bsp13I TCCGGA 1 cut(s) 49
Bsp143I GATC 1 cut(s) 523
BspACI CCGC 5 cut(s) 156, 163, 237, 456, 768
BspANI GGCC 4 cut(s) 155, 296, 499, 570
BspCNI CTCAG 2 cut(s) 366, 763
BspEI TCCGGA 1 cut(s) 49
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 709
BspMAI CTGCAG 1 cut(s) 189
BspPI GGATC 1 cut(s) 518
BspT104I TTCGAA 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 420
BsrBI CCGCTC 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 1 cut(s) 523
BssSI CACGAG 1 cut(s) 66
Bst2BI CACGAG 1 cut(s) 66
Bst2UI CCWGG 2 cut(s) 18, 269
BstBAI YACGTR 1 cut(s) 108
BstBI TTCGAA 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 374, 771
BstF5I GGATG 2 cut(s) 147, 679
BstFNI CGCG 1 cut(s) 165
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 1 cut(s) 526
BstMAI GTCTC 3 cut(s) 268, 420, 613
BstMBI GATC 1 cut(s) 523
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 5 cut(s) 164, 215, 242, 251, 705
BstNI CCWGG 2 cut(s) 18, 269
BstSCI CCNGG 2 cut(s) 16, 267
BstSFI CTRYAG 1 cut(s) 185
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 2 cut(s) 154, 199
BstV2I GAAGAC 1 cut(s) 298
BstXI CCANNNNNNTGG 1 cut(s) 703
BstZI CGGCCG 1 cut(s) 153
Bsu36I CCTNAGG 1 cut(s) 374
BsuI GTATCC 1 cut(s) 142
BsuRI GGCC 4 cut(s) 155, 296, 499, 570
BtgZI GCGATG 1 cut(s) 664
BtrI CACGTC 1 cut(s) 736
BtsCI GGATG 2 cut(s) 147, 679
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 182
CaiI CAGNNNCTG 1 cut(s) 398
CfoI GCGC 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 198, 458
CseI GACGC 1 cut(s) 688
Csp6I GTAC 3 cut(s) 128, 301, 578
CviAII CATG 2 cut(s) 202, 349
CviQI GTAC 3 cut(s) 128, 301, 578
DdeI CTNAG 2 cut(s) 374, 771
DpnI GATC 1 cut(s) 525
DpnII GATC 1 cut(s) 523
DriI GACNNNNNGTC 1 cut(s) 90
EaeI YGGCCR 2 cut(s) 153, 294
EagI CGGCCG 1 cut(s) 153
Eam1105I GACNNNNNGTC 1 cut(s) 90
EclXI CGGCCG 1 cut(s) 153
Eco147I AGGCCT 1 cut(s) 499
Eco24I GRGCYC 1 cut(s) 710
Eco31I GGTCTC 1 cut(s) 420
Eco47I GGWCC 2 cut(s) 198, 458
Eco52I CGGCCG 1 cut(s) 153
Eco72I CACGTG 1 cut(s) 108
Eco81I CCTNAGG 1 cut(s) 374
Eco88I CYCGRG 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 16, 267
EcoT38I GRGCYC 1 cut(s) 710
Esp3I CGTCTC 1 cut(s) 268
FaeI CATG 2 cut(s) 205, 352
FaiI YATR 6 cut(s) 203, 276, 350, 557, 615, 686
FalI AAGNNNNNCTT 4 cut(s) 290, 322, 484, 516
FaqI GGGAC 2 cut(s) 134, 753
FatI CATG 2 cut(s) 201, 348
Fnu4HI GCNGC 4 cut(s) 156, 168, 188, 237
FokI GGATG 2 cut(s) 154, 686
FriOI GRGCYC 1 cut(s) 710
Fsp4HI GCNGC 4 cut(s) 156, 168, 188, 237
FspBI CTAG 2 cut(s) 44, 432
GlaI GCGC 1 cut(s) 166
GluI GCNGC 4 cut(s) 156, 168, 188, 237
HaeIII GGCC 4 cut(s) 155, 296, 499, 570
HapII CCGG 3 cut(s) 50, 527, 756
HgaI GACGC 1 cut(s) 688
HhaI GCGC 1 cut(s) 167
Hin1II CATG 2 cut(s) 205, 352
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 3 cut(s) 55, 96, 331
HpaI GTTAAC 1 cut(s) 40
HpaII CCGG 3 cut(s) 50, 527, 756
HphI GGTGA 3 cut(s) 376, 685, 754
Hpy166II GTNNAC 2 cut(s) 34, 40
Hpy188I TCNGA 4 cut(s) 84, 101, 330, 791
Hpy188III TCNNGA 8 cut(s) 50, 66, 335, 373, 482, 539, 652, 671
Hpy8I GTNNAC 2 cut(s) 34, 40
Hpy99I CGWCG 3 cut(s) 88, 236, 737
HpyAV CCTTC 3 cut(s) 126, 139, 186
HpyCH4IV ACGT 5 cut(s) 36, 107, 303, 720, 735
HpyCH4V TGCA 3 cut(s) 4, 187, 725
HpyF10VI GCNNNNNNNGC 5 cut(s) 164, 215, 242, 251, 705
HpyF3I CTNAG 2 cut(s) 374, 771
HpySE526I ACGT 5 cut(s) 36, 107, 303, 720, 735
Hsp92II CATG 2 cut(s) 205, 352
HspAI GCGC 1 cut(s) 165
Kpn2I TCCGGA 1 cut(s) 49
KspAI GTTAAC 1 cut(s) 40
Kzo9I GATC 1 cut(s) 523
LmnI GCTCC 5 cut(s) 52, 230, 378, 472, 713
Lsp1109I GCAGC 2 cut(s) 154, 199
LweI GCATC 1 cut(s) 768
MaeI CTAG 2 cut(s) 44, 432
MaeII ACGT 5 cut(s) 36, 107, 303, 720, 735
MalI GATC 1 cut(s) 525
MbiI CCGCTC 1 cut(s) 239
MboI GATC 1 cut(s) 523
MboII GAAGA 3 cut(s) 69, 168, 298
MhlI GDGCHC 1 cut(s) 710
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 5 cut(s) 60, 278, 564, 659, 728
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 1 cut(s) 325
MmeI TCCRAC 1 cut(s) 107
Mox20I TGGCCA 1 cut(s) 296
MroI TCCGGA 1 cut(s) 49
MscI TGGCCA 1 cut(s) 296
MseI TTAA 2 cut(s) 39, 782
MslI CAYNNNNRTG 2 cut(s) 70, 683
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 770
MspI CCGG 3 cut(s) 50, 527, 756
MspR9I CCNGG 2 cut(s) 18, 269
MvaI CCWGG 2 cut(s) 18, 269
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 5 cut(s) 164, 215, 242, 251, 705
NdeII GATC 1 cut(s) 523
NlaIII CATG 2 cut(s) 205, 352
NlaIV GGNNCC 1 cut(s) 709
NspV TTCGAA 1 cut(s) 58
PaeR7I CTCGAG 1 cut(s) 335
PceI AGGCCT 1 cut(s) 499
PcsI WCGNNNNNNNCGW 1 cut(s) 64
PfeI GAWTC 2 cut(s) 55, 96
PflFI GACNNNGTC 1 cut(s) 202
PkrI GCNGC 4 cut(s) 157, 169, 189, 238
PleI GAGTC 1 cut(s) 325
PmaCI CACGTG 1 cut(s) 108
PmlI CACGTG 1 cut(s) 108
PpsI GAGTC 1 cut(s) 325
Ppu21I YACGTR 1 cut(s) 108
Psp6I CCWGG 2 cut(s) 16, 267
PspCI CACGTG 1 cut(s) 108
PspGI CCWGG 2 cut(s) 16, 267
PspN4I GGNNCC 1 cut(s) 709
PspPI GGNCC 2 cut(s) 198, 458
PstI CTGCAG 1 cut(s) 189
PstNI CAGNNNCTG 1 cut(s) 398
PsyI GACNNNGTC 1 cut(s) 202
RsaI GTAC 3 cut(s) 129, 302, 579
RsaNI GTAC 3 cut(s) 128, 301, 578
RseI CAYNNNNRTG 2 cut(s) 70, 683
SaqAI TTAA 2 cut(s) 39, 782
SatI GCNGC 4 cut(s) 156, 168, 188, 237
Sau3AI GATC 1 cut(s) 523
Sau96I GGNCC 2 cut(s) 198, 458
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 2 cut(s) 18, 269
SduI GDGCHC 1 cut(s) 710
SfaNI GCATC 1 cut(s) 768
SfcI CTRYAG 1 cut(s) 185
Sfr274I CTCGAG 1 cut(s) 335
SfuI TTCGAA 1 cut(s) 58
SinI GGWCC 2 cut(s) 198, 458
SlaI CTCGAG 1 cut(s) 335
SmiMI CAYNNNNRTG 2 cut(s) 70, 683
SmlI CTYRAG 2 cut(s) 335, 593
SmoI CTYRAG 2 cut(s) 335, 593
Sse9I AATT 5 cut(s) 60, 278, 564, 659, 728
SseBI AGGCCT 1 cut(s) 499
SsiI CCGC 5 cut(s) 156, 163, 237, 456, 768
SspMI CTAG 2 cut(s) 44, 432
StuI AGGCCT 1 cut(s) 499
StyD4I CCNGG 2 cut(s) 16, 267
TaiI ACGT 5 cut(s) 39, 110, 306, 723, 738
TaqI TCGA 7 cut(s) 58, 94, 288, 321, 336, 600, 732
TaqII GACCGA 1 cut(s) 671
TasI AATT 5 cut(s) 60, 278, 564, 659, 728
TauI GCSGC 2 cut(s) 158, 239
TfiI GAWTC 2 cut(s) 55, 96
Tru1I TTAA 2 cut(s) 39, 782
Tru9I TTAA 2 cut(s) 39, 782
TscAI CASTG 1 cut(s) 189
TseI GCWGC 2 cut(s) 167, 187
TspDTI ATGAA 3 cut(s) 158, 393, 701
TspGWI ACGGA 2 cut(s) 138, 250
TspRI CASTG 1 cut(s) 189
Tth111I GACNNNGTC 1 cut(s) 202
VpaK11BI GGWCC 2 cut(s) 198, 458
XapI RAATTY 4 cut(s) 60, 278, 659, 728
XhoI CTCGAG 1 cut(s) 335
XspI CTAG 2 cut(s) 44, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.