Prupe.1G196900_v2.0.a1

Domain of unknown function (DUF4504)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012507
Physical Location & Seq
Reverse (-)
18774797 .. 18780802
6006 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G196900.1

Sequence Viewer

Length: 954 bp
ATGGCGGATCCTCGAGAAGAAAAAGAGAAGCAATTCTTAACTGAAGTCGCCGAGTTAGATGAAGCACTGAGAGTGTTGGATTCTTCTCTGTCTCAAATCAAATGGCGACTCAAATATGCAAGACGTCGACTTGAGACAGATATTCTAGCTTTGTGTACAGGAATGAGGCCAGTGATAATGATAGACTATGGTGGAAAGATGCCTGAACTGCAAGAGAGATTTTGCACTCTTTTAAAACTTTGTCAAAAGGATTTGCCCATTTTTGAGCATCTGAGAGTAATGGTTATAGAAGAAATGATATATTTAGTTCACACTAGAGCGCTTGCTGATCATGTTAGGTCAAGCTTGAACTCAGAACGGCAGCTGCTCTTTGTGGACCTTGAACAGGATCCTCCGAAGATGATAACAGAAGCAGAAAAAAGCCCACTGGTGATGCAGCTTATAACAATTCAGAAGTTGTTCTCTTTGTCATTTCCTCTTGGTGAAAGGAAAGATGATGAATCATCATCTCACAGTATAGATAACATGGTTGATGCTAAACCGCCCAGAAATGAACTTATCCCTTCTCAGTCATCTAACTTTATTGATCTTAGTAGCTGCATGCAAAACACTCAGGTCACTCTGCCAACATTAAATGGGTGGCTTCTTGGTTATCCAGTTGTGTACATGTTCATCAAGGAGCACGGCGTTAAGGCTGTTCATAATATTTCTAGCAAGTATCTTCACATCTATAAAATATCAGTATGCAGGAACGGAACCCCCAATAAAGAATCTGAACTAGAAGAACTCTTGAGTTTCTCGGTCCCCTACGATCTAAGCATGGGAGGGAGCAAGGAAAAATGGGCAGAGTCATTTTTGGCTCATATGCAGGGGAAGTGGGAAATATGCAAGCCTGCTTGGAGGTCTTTGCAGATGGAGGTTAGTGAACTAAAACCACGGCCCATTGCACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4504

Protein Analysis

318

Amino Acids

36.5

Weight (kDa)

5.97

Isoelectric Point (pI)

54.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59490 AT3G59490 AT3G59490 AT3G59490
fragaria_vesca FvH4_4g10850 FvH4_4g10850
malus_domestica MD04G1042500.v1.1
prunus_persica Prupe.1G196900_v2.0.a1
pyrus_communis pycom04g03740
rosa_chinensis RchiOBHm_Chr4g0406631
rosa_multiflora Rmu_sc0002774.1_g000005
rosa_roxburghii Rroxscaffold_5G00351470
rosa_rugosa Rorug04G0072400 Rorug04G0072500
rosa_samantha Rh4AG139700 Rh4BG136700 Rh4CG146900 Rh4DG133900
rosa_wichuraiana Rw4G011380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 443
AatII GACGTC 1 cut(s) 127
AccI GTMKAC 1 cut(s) 127
AciI CCGC 2 cut(s) 5, 542
AclWI GGATC 4 cut(s) 2, 15, 383, 396
AcuI CTGAAG 1 cut(s) 63
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 2 cut(s) 157, 665
AfeI AGCGCT 1 cut(s) 321
AfiI CCNNNNNNNGG 1 cut(s) 385
AflIII ACRYGT 1 cut(s) 666
AgsI TTSAA 2 cut(s) 349, 383
AluBI AGCT 5 cut(s) 149, 345, 364, 439, 597
AluI AGCT 5 cut(s) 149, 345, 364, 439, 597
Alw21I GWGCWC 1 cut(s) 684
Alw26I GTCTC 2 cut(s) 96, 128
AlwI GGATC 4 cut(s) 2, 15, 383, 396
Ama87I CYCGRG 1 cut(s) 12
Aor51HI AGCGCT 1 cut(s) 321
AoxI GGCC 2 cut(s) 167, 938
ApeKI GCWGC 4 cut(s) 361, 364, 436, 597
Asp700I GAANNNNTTC 2 cut(s) 32, 458
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 3 cut(s) 376, 802, 939
AsuHPI GGTGA 2 cut(s) 442, 494
AvaI CYCGRG 1 cut(s) 12
AvaII GGWCC 2 cut(s) 376, 802
BamHI GGATCC 2 cut(s) 7, 388
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 4 cut(s) 351, 373, 448, 584
BccI CCATC 1 cut(s) 907
BceAI ACGGC 2 cut(s) 374, 700
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 96, 128
BfaI CTAG 4 cut(s) 146, 315, 711, 779
BfoI RGCGCY 1 cut(s) 323
BisI GCNGC 4 cut(s) 362, 365, 437, 598
BlsI GCNGC 4 cut(s) 363, 366, 438, 599
Bme18I GGWCC 2 cut(s) 376, 802
BmeT110I CYCGRG 1 cut(s) 12
BmgT120I GGNCC 3 cut(s) 376, 802, 939
BmiI GGNNCC 4 cut(s) 9, 390, 757, 804
BmsI GCATC 4 cut(s) 189, 277, 423, 523
BpuEI CTTGAG 2 cut(s) 152, 811
BsaHI GRCGYC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 935
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse1I ACTGG 3 cut(s) 170, 432, 656
Bse3DI GCAATG 1 cut(s) 942
BseDI CCNNGG 1 cut(s) 935
BseLI CCNNNNNNNGG 1 cut(s) 385
BseMI GCAATG 1 cut(s) 942
BseMII CTCAG 5 cut(s) 59, 263, 366, 581, 626
BseNI ACTGG 3 cut(s) 170, 432, 656
BseXI GCAGC 4 cut(s) 351, 373, 448, 584
BshFI GGCC 2 cut(s) 169, 940
BsiHKAI GWGCWC 1 cut(s) 684
BsiHKCI CYCGRG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 788
BslI CCNNNNNNNGG 1 cut(s) 385
BsmAI GTCTC 2 cut(s) 96, 128
BsmFI GGGAC 1 cut(s) 788
BsnI GGCC 2 cut(s) 169, 940
BsoBI CYCGRG 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 684
Bsp1407I TGTACA 2 cut(s) 155, 663
Bsp143I GATC 5 cut(s) 7, 328, 388, 586, 811
BspACI CCGC 2 cut(s) 5, 542
BspANI GGCC 2 cut(s) 169, 940
BspCNI CTCAG 5 cut(s) 60, 264, 365, 580, 625
BspLI GGNNCC 4 cut(s) 9, 390, 757, 804
BspPI GGATC 4 cut(s) 2, 15, 383, 396
BsrDI GCAATG 1 cut(s) 942
BsrGI TGTACA 2 cut(s) 155, 663
BsrI ACTGG 3 cut(s) 170, 432, 656
BssECI CCNNGG 1 cut(s) 935
BssMI GATC 5 cut(s) 7, 328, 388, 586, 811
BssNI GRCGYC 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 515, 951
BstACI GRCGYC 1 cut(s) 124
BstAUI TGTACA 2 cut(s) 155, 663
BstC8I GCNNGC 4 cut(s) 324, 602, 890, 894
BstDEI CTNAG 7 cut(s) 68, 272, 352, 567, 590, 612, 815
BstDSI CCRYGG 1 cut(s) 935
BstENI CCTNNNNNAGG 1 cut(s) 383
BstH2I RGCGCY 1 cut(s) 323
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 5 cut(s) 10, 331, 391, 589, 814
BstMAI GTCTC 2 cut(s) 96, 128
BstMBI GATC 5 cut(s) 7, 328, 388, 586, 811
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstNSI RCATGY 2 cut(s) 604, 670
BstV1I GCAGC 4 cut(s) 351, 373, 448, 584
BstX2I RGATCY 2 cut(s) 7, 388
BstYI RGATCY 2 cut(s) 7, 388
BsuRI GGCC 2 cut(s) 169, 940
BtgI CCRYGG 1 cut(s) 935
BtsIMutI CAGTG 4 cut(s) 65, 177, 425, 947
Cac8I GCNNGC 4 cut(s) 324, 602, 890, 894
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 3 cut(s) 376, 802, 939
Csp6I GTAC 2 cut(s) 156, 664
CviAII CATG 5 cut(s) 332, 526, 601, 667, 820
CviQI GTAC 2 cut(s) 156, 664
DdeI CTNAG 7 cut(s) 68, 272, 352, 567, 590, 612, 815
DpnI GATC 5 cut(s) 9, 330, 390, 588, 813
DpnII GATC 5 cut(s) 7, 328, 388, 586, 811
DraI TTTAAA 1 cut(s) 234
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 2 cut(s) 376, 802
Eco47III AGCGCT 1 cut(s) 321
Eco57I CTGAAG 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 12
EcoNI CCTNNNNNAGG 1 cut(s) 383
FaeI CATG 5 cut(s) 335, 529, 604, 670, 823
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 1 cut(s) 788
FatI CATG 5 cut(s) 331, 525, 600, 666, 819
FauNDI CATATG 1 cut(s) 864
FbaI TGATCA 1 cut(s) 328
FblI GTMKAC 1 cut(s) 127
Fnu4HI GCNGC 4 cut(s) 362, 365, 437, 598
Fsp4HI GCNGC 4 cut(s) 362, 365, 437, 598
FspBI CTAG 4 cut(s) 146, 315, 711, 779
GlaI GCGC 1 cut(s) 321
GluI GCNGC 4 cut(s) 362, 365, 437, 598
HaeII RGCGCY 1 cut(s) 323
HaeIII GGCC 2 cut(s) 169, 940
HhaI GCGC 1 cut(s) 322
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 5 cut(s) 335, 529, 604, 670, 823
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 128
HindII GTYRAC 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 343
HinfI GANTC 5 cut(s) 80, 108, 500, 770, 848
HphI GGTGA 2 cut(s) 442, 494
Hpy166II GTNNAC 6 cut(s) 128, 156, 310, 376, 664, 926
Hpy188I TCNGA 5 cut(s) 273, 355, 396, 453, 775
Hpy188III TCNNGA 2 cut(s) 14, 790
Hpy8I GTNNAC 6 cut(s) 128, 156, 310, 376, 664, 926
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 573
HpyCH4III ACNGT 2 cut(s) 515, 951
HpyCH4IV ACGT 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 7 cut(s) 68, 272, 352, 567, 590, 612, 815
HpySE526I ACGT 1 cut(s) 124
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 5 cut(s) 335, 529, 604, 670, 823
HspAI GCGC 1 cut(s) 320
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 5 cut(s) 7, 328, 388, 586, 811
LmnI GCTCC 2 cut(s) 679, 828
Lsp1109I GCAGC 4 cut(s) 351, 373, 448, 584
LweI GCATC 4 cut(s) 189, 277, 423, 523
MaeI CTAG 4 cut(s) 146, 315, 711, 779
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 1 cut(s) 616
MalI GATC 5 cut(s) 9, 330, 390, 588, 813
MboI GATC 5 cut(s) 7, 328, 388, 586, 811
MboII GAAGA 6 cut(s) 29, 75, 302, 409, 713, 794
MflI RGATCY 2 cut(s) 7, 388
MhlI GDGCHC 1 cut(s) 684
MluCI AATT 2 cut(s) 32, 447
MlyI GAGTC 2 cut(s) 102, 857
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 7 cut(s) 21, 159, 402, 486, 818, 894, 910
MroXI GAANNNNTTC 2 cut(s) 32, 458
MseI TTAA 4 cut(s) 38, 233, 632, 690
MspA1I CMGCKG 1 cut(s) 364
MwoI GCNNNNNNNGC 1 cut(s) 208
NdeI CATATG 1 cut(s) 864
NdeII GATC 5 cut(s) 7, 328, 388, 586, 811
NlaIII CATG 5 cut(s) 335, 529, 604, 670, 823
NlaIV GGNNCC 4 cut(s) 9, 390, 757, 804
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 616
NspI RCATGY 2 cut(s) 604, 670
PaeI GCATGC 1 cut(s) 604
PaeR7I CTCGAG 1 cut(s) 12
PciI ACATGT 1 cut(s) 666
PdmI GAANNNNTTC 2 cut(s) 32, 458
PfeI GAWTC 3 cut(s) 80, 500, 770
PkrI GCNGC 4 cut(s) 363, 366, 438, 599
PleI GAGTC 2 cut(s) 102, 856
PpsI GAGTC 2 cut(s) 102, 856
PscI ACATGT 1 cut(s) 666
PsiI TTATAA 1 cut(s) 443
PspN4I GGNNCC 4 cut(s) 9, 390, 757, 804
PspPI GGNCC 3 cut(s) 376, 802, 939
PsuI RGATCY 2 cut(s) 7, 388
PvuII CAGCTG 1 cut(s) 364
RsaI GTAC 2 cut(s) 157, 665
RsaNI GTAC 2 cut(s) 156, 664
SalI GTCGAC 1 cut(s) 126
SaqAI TTAA 4 cut(s) 38, 233, 632, 690
SatI GCNGC 4 cut(s) 362, 365, 437, 598
Sau3AI GATC 5 cut(s) 7, 328, 388, 586, 811
Sau96I GGNCC 3 cut(s) 376, 802, 939
SchI GAGTC 2 cut(s) 102, 857
SduI GDGCHC 1 cut(s) 684
SfaNI GCATC 4 cut(s) 189, 277, 423, 523
Sfr274I CTCGAG 1 cut(s) 12
SinI GGWCC 2 cut(s) 376, 802
SlaI CTCGAG 1 cut(s) 12
SmlI CTYRAG 3 cut(s) 12, 131, 790
SmoI CTYRAG 3 cut(s) 12, 131, 790
SphI GCATGC 1 cut(s) 604
Sse9I AATT 2 cut(s) 32, 447
SsiI CCGC 2 cut(s) 5, 542
SspI AATATT 1 cut(s) 706
SspMI CTAG 4 cut(s) 146, 315, 711, 779
TaaI ACNGT 2 cut(s) 515, 951
TaiI ACGT 1 cut(s) 127
TaqI TCGA 2 cut(s) 13, 127
TaqII GACCGA 1 cut(s) 790
TasI AATT 2 cut(s) 32, 447
TatI WGTACW 2 cut(s) 155, 663
TfiI GAWTC 3 cut(s) 80, 500, 770
Tru1I TTAA 4 cut(s) 38, 233, 632, 690
Tru9I TTAA 4 cut(s) 38, 233, 632, 690
TscAI CASTG 4 cut(s) 72, 177, 432, 954
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 4 cut(s) 361, 364, 436, 597
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 5 cut(s) 75, 513, 567, 661, 689
TspGWI ACGGA 1 cut(s) 768
TspRI CASTG 4 cut(s) 72, 177, 432, 954
VpaK11BI GGWCC 2 cut(s) 376, 802
XagI CCTNNNNNAGG 1 cut(s) 383
XceI RCATGY 2 cut(s) 604, 670
XhoI CTCGAG 1 cut(s) 12
XmiI GTMKAC 1 cut(s) 127
XmnI GAANNNNTTC 2 cut(s) 32, 458
XspI CTAG 4 cut(s) 146, 315, 711, 779
ZraI GACGTC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.