Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008474

Physical Location & Seq

Genomic Coordinates Forward (+)

22043919 .. 22046047

Gene Structure 2129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G59680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTGTGAGTGTGACATAAAAAAGGTTATGGCAAACAGAAAACCTTGGTACCAGAGAGCTATGGCGGTTGCCAGATTCGCAACGAATTGGAGAACAATCCCTAAATCATCATCACAACAACAACCAGAGAATTTTCGTCCGTCTCGAAACCCTAGCGTCAACAGCAAGTCATCCAATCATAACCAAATTTATCACCAGCTGAGAAAATGCTCGTCTCTCAAGGTAGCTGCGAATTCTTTCACTAGGGTTTGCCTCTGCGCTCCGATTGGTCCATACGACGACGTTTTTCGGATTCACGTCCCGCCGAGAAGAAGTTCAAGCTATCCTCCGTCGAAGCCTCTTCCTATGGAGACGGCAGTGGCGGTGGCGACGGCGAGGATGAGTGTGGATTCAGGGAGGAGGATATTTAGAGGGAAGTCGTTGAGGGAAAACGCGTTGATGAGGAGATTCGTGGTGGCGGAAGAAGAAGCGATAATGGAGAATAGAAAGAGAGATCAAATGGAGATTGTGAGGAAGAGAAATCAGATGAGGAGGAAGAAGAAGCTTGGACCTAGTCCTCTTAGTCGTATGGTTATCGCTGAAGATCAAGAAGTTTGTCTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

23.19

Weight (kDa)

10.58

Isoelectric Point (pI)

64.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59680 AT3G59680
fragaria_vesca	FvH4_4g10370 FvH4_4g10370 FvH4_4g10370 FvH4_4g10370
malus_domestica	MD04G1049300.v1.1 MD17G1178000.v1.1
prunus_persica	Prupe.1G207500_v2.0.a1 Prupe.1G207500_v2.0.a1
pyrus_communis	pycom04g04350
rosa_chinensis	RchiOBHm_Chr4g0405921
rosa_laevigata	RLG00000008816
rosa_multiflora	Rmu_sc0006506.1_g000001 Rmu_sc0007090.1_g000001
rosa_roxburghii	Rroxscaffold_5G00350600
rosa_rugosa	Rorug04G0063700 Rorug04G0063800
rosa_samantha	Rh4AG134400 Rh4BG129600 Rh4CG142200 Rh4DG128900
rosa_wichuraiana	Rw4G010960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	48
AccB1I	GGYRCC	1 cut(s)	48
AccII	CGCG	1 cut(s)	434
AciI	CCGC	4 cut(s)	65, 302, 362, 458
AcsI	RAATTY	3 cut(s)	130, 186, 232
AcuI	CTGAAG	1 cut(s)	600
AfaI	GTAC	1 cut(s)	50
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	1 cut(s)	318
AjiI	CACGTC	1 cut(s)	298
AluBI	AGCT	5 cut(s)	59, 199, 227, 321, 544
AluI	AGCT	5 cut(s)	59, 199, 227, 321, 544
Alw26I	GTCTC	3 cut(s)	147, 219, 344
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	3 cut(s)	130, 186, 232
Asp700I	GAANNNNTTC	2 cut(s)	236, 313
Asp718I	GGTACC	1 cut(s)	48
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	269, 548
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	2 cut(s)	269, 548
BaeI	ACNNNNGTAYC	2 cut(s)	32, 65
BanI	GGYRCC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	590
BbvI	GCAGC	1 cut(s)	214
BceAI	ACGGC	2 cut(s)	369, 387
BcoDI	GTCTC	3 cut(s)	147, 219, 344
BfaI	CTAG	3 cut(s)	153, 243, 552
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme18I	GGWCC	2 cut(s)	269, 548
BmgBI	CACGTC	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	269, 548
BmiI	GGNNCC	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	590
BpuEI	CTTGAG	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	2 cut(s)	170, 384
BseMII	CTCAG	1 cut(s)	191
BseRI	GAGGAG	3 cut(s)	412, 457, 544
BseXI	GCAGC	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	434
BshNI	GGYRCC	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	284
BsmAI	GTCTC	3 cut(s)	147, 219, 344
BsmBI	CGTCTC	3 cut(s)	147, 219, 344
BsmFI	GGGAC	1 cut(s)	284
Bsp143I	GATC	2 cut(s)	493, 583
BspACI	CCGC	4 cut(s)	65, 302, 362, 458
BspCNI	CTCAG	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	434
BspLI	GGNNCC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	2 cut(s)	493, 583
BssT1I	CCWWGG	1 cut(s)	44
Bst6I	CTCTTC	2 cut(s)	345, 509
BstDEI	CTNAG	2 cut(s)	200, 560
BstF5I	GGATG	2 cut(s)	170, 384
BstFNI	CGCG	1 cut(s)	434
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	2 cut(s)	496, 586
BstMAI	GTCTC	3 cut(s)	147, 219, 344
BstMBI	GATC	2 cut(s)	493, 583
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 162
BstUI	CGCG	1 cut(s)	434
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	590
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	170, 384
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	363
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	269, 548
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	49
CviJI	RGCY	6 cut(s)	59, 199, 227, 321, 337, 544
CviKI_1	RGCY	6 cut(s)	59, 199, 227, 321, 337, 544
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	2 cut(s)	200, 560
DpnI	GATC	2 cut(s)	495, 585
DpnII	GATC	2 cut(s)	493, 583
Eam1104I	CTCTTC	2 cut(s)	345, 509
EarI	CTCTTC	2 cut(s)	345, 509
EciI	GGCGGA	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	44
Eco47I	GGWCC	2 cut(s)	269, 548
Eco57I	CTGAAG	1 cut(s)	600
EcoRI	GAATTC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	44
Esp3I	CGTCTC	3 cut(s)	147, 219, 344
FaiI	YATR	7 cut(s)	17, 29, 62, 180, 274, 347, 569
FalI	AAGNNNNNCTT	1 cut(s)	582
FaqI	GGGAC	1 cut(s)	284
FauI	CCCGC	1 cut(s)	309
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	2 cut(s)	157, 391
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	3 cut(s)	153, 243, 552
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	1 cut(s)	228
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	260
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	4 cut(s)	75, 292, 389, 447
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	3 cut(s)	264, 291, 525
Hpy188III	TCNNGA	2 cut(s)	144, 587
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	4 cut(s)	281, 284, 334, 373
HpyCH4IV	ACGT	2 cut(s)	282, 297
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 162
HpyF3I	CTNAG	2 cut(s)	200, 560
HpySE526I	ACGT	2 cut(s)	282, 297
HspAI	GCGC	1 cut(s)	258
KpnI	GGTACC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	493, 583
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	5 cut(s)	65, 85, 138, 209, 378
Lsp1109I	GCAGC	1 cut(s)	214
MaeI	CTAG	3 cut(s)	153, 243, 552
MaeII	ACGT	2 cut(s)	282, 297
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	2 cut(s)	495, 585
MboI	GATC	2 cut(s)	493, 583
MboII	GAAGA	9 cut(s)	321, 332, 473, 476, 526, 547, 550, 590, 593
MluCI	AATT	4 cut(s)	85, 130, 186, 232
MluI	ACGCGT	1 cut(s)	432
MroXI	GAANNNNTTC	2 cut(s)	236, 313
MspA1I	CMGCKG	1 cut(s)	199
MvnI	CGCG	1 cut(s)	434
MwoI	GCNNNNNNNGC	2 cut(s)	77, 162
NdeII	GATC	2 cut(s)	493, 583
NlaIV	GGNNCC	1 cut(s)	50
NmeAIII	GCCGAG	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PdmI	GAANNNNTTC	2 cut(s)	236, 313
PfeI	GAWTC	4 cut(s)	75, 292, 389, 447
PflFI	GACNNNGTC	1 cut(s)	552
PkrI	GCNGC	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	50
PspPI	GGNCC	2 cut(s)	269, 548
PsyI	GACNNNGTC	1 cut(s)	552
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	2 cut(s)	493, 583
Sau96I	GGNCC	2 cut(s)	269, 548
SinI	GGWCC	2 cut(s)	269, 548
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	4 cut(s)	85, 130, 186, 232
SsiI	CCGC	4 cut(s)	65, 302, 362, 458
SspMI	CTAG	3 cut(s)	153, 243, 552
StyI	CCWWGG	1 cut(s)	44
TaiI	ACGT	2 cut(s)	285, 300
TaqI	TCGA	2 cut(s)	145, 332
TasI	AATT	4 cut(s)	85, 130, 186, 232
TfiI	GAWTC	4 cut(s)	75, 292, 389, 447
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	11
TspGWI	ACGGA	2 cut(s)	129, 318
TspRI	CASTG	1 cut(s)	363
Tth111I	GACNNNGTC	1 cut(s)	552
VpaK11BI	GGWCC	2 cut(s)	269, 548
XapI	RAATTY	3 cut(s)	130, 186, 232
XmnI	GAANNNNTTC	2 cut(s)	236, 313
XspI	CTAG	3 cut(s)	153, 243, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.