Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008474

Physical Location & Seq

Genomic Coordinates Reverse (-)

9902028 .. 9902694

Gene Structure 667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0063700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCATACTATCAAGTAGATGAAGAGCTTGTCGGATTGGTTGATAGTCCTCCTCATTGTTACGAGAAGAAATGGAACCATAGGATGTATAGATATTTTAAGGAGTCTACTGGCGGCCATTTGCATCTTATTGATATTTATTCTCCTTGTCCTACTAAATTTGAAGTATTGGAGATGGGGAGAGATTACTCTGGCTGGTTTATCAAGTACCATGTTGATCTTGATCCCTTATGCACCGCTTACCCATGCTTCCTAAGTGAACAGTTTGTTGTTCTGTTCCTTGCTCAAGACGAAAATGAAGGGGAAAGTTCATCCCTGATGCTGCATTCTCCTGGTACAGTCATCTCTTATAATCTTAAGAGTAAGACCTCCAAATCTTTTGAGTTAACTATTGATCGGTATTTACTAGTTGGACATTCCAATTATCCATATATGGAGACTTTGGCTTGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

17.58

Weight (kDa)

5.25

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59680 AT3G59680
fragaria_vesca	FvH4_4g10370 FvH4_4g10370 FvH4_4g10370 FvH4_4g10370
malus_domestica	MD04G1049300.v1.1 MD17G1178000.v1.1
prunus_persica	Prupe.1G207500_v2.0.a1 Prupe.1G207500_v2.0.a1
pyrus_communis	pycom04g04350
rosa_chinensis	RchiOBHm_Chr4g0405921
rosa_laevigata	RLG00000008816
rosa_multiflora	Rmu_sc0006506.1_g000001 Rmu_sc0007090.1_g000001
rosa_roxburghii	Rroxscaffold_5G00350600
rosa_rugosa	Rorug04G0063700 Rorug04G0063800
rosa_samantha	Rh4AG134400 Rh4BG129600 Rh4CG142200 Rh4DG128900
rosa_wichuraiana	Rw4G010960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	351
AccI	GTMKAC	1 cut(s)	107
AciI	CCGC	2 cut(s)	114, 237
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	158
AfaI	GTAC	2 cut(s)	209, 337
AflII	CTTAAG	1 cut(s)	356
AgsI	TTSAA	1 cut(s)	164
AhlI	ACTAGT	1 cut(s)	406
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	431
BcuI	ACTAGT	1 cut(s)	406
BfaI	CTAG	1 cut(s)	407
BfrI	CTTAAG	1 cut(s)	356
BisI	GCNGC	2 cut(s)	115, 323
BlsI	GCNGC	2 cut(s)	116, 324
Bme1390I	CCNGG	1 cut(s)	333
BmiI	GGNNCC	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	2 cut(s)	133, 309
BpuEI	CTTGAG	1 cut(s)	270
BsaBI	GATNNNNATC	1 cut(s)	222
Bse1I	ACTGG	1 cut(s)	115
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	333
BseGI	GGATG	2 cut(s)	90, 311
BseJI	GATNNNNATC	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	1 cut(s)	309
BshFI	GGCC	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	431
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	117
Bsp143I	GATC	3 cut(s)	217, 223, 394
BspACI	CCGC	2 cut(s)	114, 237
BspANI	GGCC	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	77
BspPI	GGATC	1 cut(s)	218
BspQI	GCTCTTC	1 cut(s)	18
BspTI	CTTAAG	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	115
BssMI	GATC	3 cut(s)	217, 223, 394
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	264, 340
Bst6I	CTCTTC	1 cut(s)	18
BstAFI	CTTAAG	1 cut(s)	356
BstDEI	CTNAG	1 cut(s)	254
BstF5I	GGATG	2 cut(s)	90, 311
BstKTI	GATC	3 cut(s)	220, 226, 397
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	3 cut(s)	217, 223, 394
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	331
BstV1I	GCAGC	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	90, 311
Csp6I	GTAC	2 cut(s)	208, 336
CviAII	CATG	2 cut(s)	212, 246
CviJI	RGCY	4 cut(s)	28, 117, 195, 446
CviKI_1	RGCY	4 cut(s)	28, 117, 195, 446
CviQI	GTAC	2 cut(s)	208, 336
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	3 cut(s)	219, 225, 396
DpnII	GATC	3 cut(s)	217, 223, 394
EaeI	YGGCCR	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	331
FaeI	CATG	2 cut(s)	215, 249
FatI	CATG	2 cut(s)	211, 245
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	115, 323
FokI	GGATG	2 cut(s)	97, 298
Fsp4HI	GCNGC	2 cut(s)	115, 323
FspBI	CTAG	1 cut(s)	407
GluI	GCNGC	2 cut(s)	115, 323
HaeIII	GGCC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	215, 249
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HinfI	GANTC	1 cut(s)	104
HpaI	GTTAAC	1 cut(s)	387
Hpy166II	GTNNAC	3 cut(s)	108, 260, 387
Hpy188I	TCNGA	1 cut(s)	35
Hpy188III	TCNNGA	2 cut(s)	221, 287
Hpy8I	GTNNAC	3 cut(s)	108, 260, 387
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	2 cut(s)	264, 340
HpyCH4V	TGCA	3 cut(s)	124, 234, 325
HpyF3I	CTNAG	1 cut(s)	254
Hsp92II	CATG	2 cut(s)	215, 249
KspAI	GTTAAC	1 cut(s)	387
Kzo9I	GATC	3 cut(s)	217, 223, 394
LguI	GCTCTTC	1 cut(s)	18
LpnPI	CCDG	6 cut(s)	96, 177, 181, 318, 329, 345
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	2 cut(s)	133, 309
MaeI	CTAG	1 cut(s)	407
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	3 cut(s)	219, 225, 396
MboI	GATC	3 cut(s)	217, 223, 394
MboII	GAAGA	2 cut(s)	35, 79
MluCI	AATT	2 cut(s)	158, 421
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	2 cut(s)	13, 391
MnlI	CCTC	3 cut(s)	60, 63, 379
MseI	TTAA	3 cut(s)	99, 357, 386
MspCI	CTTAAG	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	333
NdeII	GATC	3 cut(s)	217, 223, 394
NlaIII	CATG	2 cut(s)	215, 249
NlaIV	GGNNCC	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	18
PctI	GAATGC	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	116, 324
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PsiI	TTATAA	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	77
RsaI	GTAC	2 cut(s)	209, 337
RsaNI	GTAC	2 cut(s)	208, 336
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	3 cut(s)	99, 357, 386
SatI	GCNGC	2 cut(s)	115, 323
Sau3AI	GATC	3 cut(s)	217, 223, 394
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	333
SetI	ASST	2 cut(s)	30, 371
SfaNI	GCATC	2 cut(s)	133, 309
SmlI	CTYRAG	2 cut(s)	285, 356
SmoI	CTYRAG	2 cut(s)	285, 356
SpeI	ACTAGT	1 cut(s)	406
Sse9I	AATT	2 cut(s)	158, 421
SsiI	CCGC	2 cut(s)	114, 237
SspMI	CTAG	1 cut(s)	407
StyD4I	CCNGG	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	264, 340
TasI	AATT	2 cut(s)	158, 421
TauI	GCSGC	1 cut(s)	117
Tru1I	TTAA	3 cut(s)	99, 357, 386
Tru9I	TTAA	3 cut(s)	99, 357, 386
TseI	GCWGC	1 cut(s)	322
TspDTI	ATGAA	3 cut(s)	36, 300, 312
Vha464I	CTTAAG	1 cut(s)	356
XapI	RAATTY	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	107
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.