Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0008474

Physical Location & Seq

Genomic Coordinates Reverse (-)

29412045 .. 29414363

Gene Structure 2319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG134400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCAAGATCCAAAGAACTCACAAGCAGCAAGGAAGCCTTGGTATCAAAGAGCAATAGAGATGGGCTCTCTATGGAGATCAAGCATTAGTAGTCCCAAGCTTCCCACAGATCAAGTTCCAGCACCAAATGCCACAACATTGTGGAAAACCATTACCAAATCCACAAACACCAACATTCCTAATTCTTCGAATTCCAATAGACACAAGCTGAGAAAATGTGCCTCCTTAAAGGTTGCGACTTCGTTTACTAGGGTTTGTCTTTGTGCACCCATATCTTCCTACAATGAGGTTTTTAGGGCTGAGCTCCCACCAAGAAGAAGCAATAGTTATCCGAGATCGAAGCCATTGGGGATGACGACACAAGATCAAAGAAGCATTACCACTATGAGCGCGAGGCTTAGCACTTCCGAGAGAAGAGTTTTTCGTGGGAAATCTCTGACGGAAGACGTTTTGATGAGGAGGTTCGTTATGGAAGAAGAAGCAATGATGCACGTTAGAAGGAGAAATCAAATGGAAGTAATAAGAAGAAAAAGTATAATGAGGAGGAAGAATCTTGGGCCTAGTCGTCTTAGTAGAATGGTTATGGCTGGGGAGGAGGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

23.14

Weight (kDa)

11.24

Isoelectric Point (pI)

74.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59680 AT3G59680
fragaria_vesca	FvH4_4g10370 FvH4_4g10370 FvH4_4g10370 FvH4_4g10370
malus_domestica	MD04G1049300.v1.1 MD17G1178000.v1.1
prunus_persica	Prupe.1G207500_v2.0.a1 Prupe.1G207500_v2.0.a1
pyrus_communis	pycom04g04350
rosa_chinensis	RchiOBHm_Chr4g0405921
rosa_laevigata	RLG00000008816
rosa_multiflora	Rmu_sc0006506.1_g000001 Rmu_sc0007090.1_g000001
rosa_roxburghii	Rroxscaffold_5G00350600
rosa_rugosa	Rorug04G0063700 Rorug04G0063800
rosa_samantha	Rh4AG134400 Rh4BG129600 Rh4CG142200 Rh4DG128900
rosa_wichuraiana	Rw4G010960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	392
AclWI	GGATC	1 cut(s)	2
AcsI	RAATTY	1 cut(s)	190
AluBI	AGCT	3 cut(s)	100, 208, 304
AluI	AGCT	3 cut(s)	100, 208, 304
Alw21I	GWGCWC	2 cut(s)	268, 306
Alw44I	GTGCAC	1 cut(s)	264
AlwI	GGATC	1 cut(s)	2
AoxI	GGCC	1 cut(s)	557
ApaLI	GTGCAC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	557
AsuII	TTCGAA	1 cut(s)	188
BaeGI	GKGCMC	1 cut(s)	268
BanII	GRGCYC	2 cut(s)	68, 306
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	2 cut(s)	268, 306
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	1 cut(s)	55
BfaI	CTAG	2 cut(s)	249, 561
BisI	GCNGC	1 cut(s)	27
BlpI	GCTNAGC	2 cut(s)	300, 398
BlsI	GCNGC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	557
BmsI	GCATC	1 cut(s)	477
BpiI	GAAGAC	1 cut(s)	450
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
Bpu1102I	GCTNAGC	2 cut(s)	300, 398
Bpu14I	TTCGAA	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	2 cut(s)	200, 291
BseRI	GAGGAG	2 cut(s)	472, 556
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	587
Bsh1236I	CGCG	1 cut(s)	392
BshFI	GGCC	1 cut(s)	559
BsiHKAI	GWGCWC	2 cut(s)	268, 306
BslFI	GGGAC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	559
Bsp119I	TTCGAA	1 cut(s)	188
Bsp1286I	GDGCHC	3 cut(s)	68, 268, 306
Bsp143I	GATC	5 cut(s)	7, 77, 109, 335, 364
Bsp1720I	GCTNAGC	2 cut(s)	300, 398
BspANI	GGCC	1 cut(s)	559
BspCNI	CTCAG	2 cut(s)	201, 292
BspFNI	CGCG	1 cut(s)	392
BspPI	GGATC	1 cut(s)	2
BspT104I	TTCGAA	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	489
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	5 cut(s)	7, 77, 109, 335, 364
BssT1I	CCWWGG	1 cut(s)	38
Bst6I	CTCTTC	1 cut(s)	409
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstBI	TTCGAA	1 cut(s)	188
BstDEI	CTNAG	4 cut(s)	209, 300, 398, 569
BstF5I	GGATG	1 cut(s)	357
BstFNI	CGCG	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	5 cut(s)	10, 80, 112, 338, 367
BstMBI	GATC	5 cut(s)	7, 77, 109, 335, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstSLI	GKGCMC	1 cut(s)	268
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	357
CfoI	GCGC	1 cut(s)	392
Cfr13I	GGNCC	1 cut(s)	557
DdeI	CTNAG	4 cut(s)	209, 300, 398, 569
DpnI	GATC	5 cut(s)	9, 79, 111, 337, 366
DpnII	GATC	5 cut(s)	7, 77, 109, 335, 364
Eam1104I	CTCTTC	1 cut(s)	409
EarI	CTCTTC	1 cut(s)	409
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	38
Eco24I	GRGCYC	2 cut(s)	68, 306
Eco53kI	GAGCTC	1 cut(s)	304
EcoICRI	GAGCTC	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	38
EcoT38I	GRGCYC	2 cut(s)	68, 306
ErhI	CCWWGG	1 cut(s)	38
FaiI	YATR	6 cut(s)	73, 272, 386, 470, 536, 584
FalI	AAGNNNNNCTT	2 cut(s)	22, 54
FaqI	GGGAC	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	1 cut(s)	364
FriOI	GRGCYC	2 cut(s)	68, 306
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	2 cut(s)	249, 561
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	1 cut(s)	27
GsaI	CCCAGC	1 cut(s)	591
HaeIII	GGCC	1 cut(s)	559
HhaI	GCGC	1 cut(s)	392
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	1 cut(s)	550
Hpy166II	GTNNAC	2 cut(s)	246, 266
Hpy188I	TCNGA	3 cut(s)	333, 409, 438
Hpy8I	GTNNAC	2 cut(s)	246, 266
HpyAV	CCTTC	1 cut(s)	492
HpyCH4IV	ACGT	2 cut(s)	447, 492
HpyCH4V	TGCA	3 cut(s)	4, 266, 490
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	4 cut(s)	209, 300, 398, 569
HpySE526I	ACGT	2 cut(s)	447, 492
HspAI	GCGC	1 cut(s)	390
Kzo9I	GATC	5 cut(s)	7, 77, 109, 335, 364
LmnI	GCTCC	1 cut(s)	309
LpnPI	CCDG	2 cut(s)	132, 573
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	1 cut(s)	477
MaeI	CTAG	2 cut(s)	249, 561
MaeII	ACGT	2 cut(s)	447, 492
MalI	GATC	5 cut(s)	9, 79, 111, 337, 366
MboI	GATC	5 cut(s)	7, 77, 109, 335, 364
MboII	GAAGA	9 cut(s)	177, 267, 327, 426, 455, 485, 488, 537, 559
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	3 cut(s)	68, 268, 306
MluCI	AATT	3 cut(s)	181, 190, 601
MnlI	CCTC	9 cut(s)	232, 280, 387, 450, 453, 534, 537, 586, 589
MseI	TTAA	1 cut(s)	227
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	5 cut(s)	7, 77, 109, 335, 364
NspV	TTCGAA	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	550
PkrI	GCNGC	1 cut(s)	28
Psp124BI	GAGCTC	1 cut(s)	306
PspFI	CCCAGC	1 cut(s)	587
PspPI	GGNCC	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	7
SacI	GAGCTC	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	5 cut(s)	7, 77, 109, 335, 364
Sau96I	GGNCC	1 cut(s)	557
SduI	GDGCHC	3 cut(s)	68, 268, 306
SetI	ASST	8 cut(s)	102, 210, 234, 291, 306, 450, 464, 495
SfaNI	GCATC	1 cut(s)	477
SfuI	TTCGAA	1 cut(s)	188
Sse9I	AATT	3 cut(s)	181, 190, 601
SspMI	CTAG	2 cut(s)	249, 561
SstI	GAGCTC	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	38
TaiI	ACGT	2 cut(s)	450, 495
TaqI	TCGA	2 cut(s)	188, 338
TasI	AATT	3 cut(s)	181, 190, 601
TfiI	GAWTC	1 cut(s)	550
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TseI	GCWGC	1 cut(s)	26
TspGWI	ACGGA	1 cut(s)	455
VneI	GTGCAC	1 cut(s)	264
XapI	RAATTY	1 cut(s)	190
XspI	CTAG	2 cut(s)	249, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.