Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008474

Physical Location & Seq

Genomic Coordinates Reverse (-)

13967403 .. 13972321

Gene Structure 4919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGCACTCTATGGAGATCAAGCATCAGTAGTCCCAAGCATCCGACAGATCAAGTTACAACACCAAATGCCACAACCTTGTGGAAAACCATTACCAAATCCACAAACAACAACATTCCTAATTCTTCGAATTCCAGTAGACACAAGCTGAGAAAATGTGCCTCCTTAAAGGTTGCGACTTCGTTTACTAGGGTTTGTCTTTGTGCACCCATCTCTTCCAACAATGAGATTTTTAGGTCTGAGCTCCCACCAAGAAGAAGCAACAGTTACCCGAGATCGAAGCCATTGGGGACGACGACGCCGCCGCAAGATCAAAGAATAAGCAATATTACGACTATGATGAGCACAAGGCGTAGCACTTCCGAGAGAAGAGTGTTTCGTGGGAAATCACTGACGGACGACGTTTTGATGAGGAGATTTGTTGTGGAAGAAGAAGCAATGATGCACGTCAGAAGGAGAAATCAAATGGAAGTAATAAGGAGAAAAAGTAAAATGAGGAGGAAGAATCTTGGGCCTAGTCGTCTTAGTAGAATGGTCATGGCTGGAGAGGAGGATAATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

21.43

Weight (kDa)

11.53

Isoelectric Point (pI)

85.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59680 AT3G59680
fragaria_vesca	FvH4_4g10370 FvH4_4g10370 FvH4_4g10370 FvH4_4g10370
malus_domestica	MD04G1049300.v1.1 MD17G1178000.v1.1
prunus_persica	Prupe.1G207500_v2.0.a1 Prupe.1G207500_v2.0.a1
pyrus_communis	pycom04g04350
rosa_chinensis	RchiOBHm_Chr4g0405921
rosa_laevigata	RLG00000008816
rosa_multiflora	Rmu_sc0006506.1_g000001 Rmu_sc0007090.1_g000001
rosa_roxburghii	Rroxscaffold_5G00350600
rosa_rugosa	Rorug04G0063700 Rorug04G0063800
rosa_samantha	Rh4AG134400 Rh4BG129600 Rh4CG142200 Rh4DG128900
rosa_wichuraiana	Rw4G010960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	139
AciI	CCGC	2 cut(s)	302, 305
AcsI	RAATTY	1 cut(s)	130
AcyI	GRCGYC	1 cut(s)	299
AjiI	CACGTC	1 cut(s)	448
AluBI	AGCT	2 cut(s)	148, 244
AluI	AGCT	2 cut(s)	148, 244
Alw21I	GWGCWC	3 cut(s)	208, 246, 347
Alw44I	GTGCAC	1 cut(s)	204
Ama87I	CYCGRG	1 cut(s)	271
AoxI	GGCC	1 cut(s)	512
ApaLI	GTGCAC	1 cut(s)	204
ApoI	RAATTY	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	512
AsuII	TTCGAA	1 cut(s)	128
AvaI	CYCGRG	1 cut(s)	271
BaeGI	GKGCMC	2 cut(s)	8, 208
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	3 cut(s)	208, 246, 347
BccI	CCATC	1 cut(s)	218
BfaI	CTAG	2 cut(s)	189, 516
BisI	GCNGC	2 cut(s)	302, 305
BlsI	GCNGC	2 cut(s)	303, 306
BmeT110I	CYCGRG	1 cut(s)	271
BmgBI	CACGTC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	512
BmsI	GCATC	3 cut(s)	33, 49, 432
BpmI	CTGGAG	1 cut(s)	564
Bpu14I	TTCGAA	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	472, 502
Bse1I	ACTGG	1 cut(s)	135
Bse3DI	GCAATG	1 cut(s)	444
BseGI	GGATG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	2 cut(s)	140, 231
BseNI	ACTGG	1 cut(s)	135
BseRI	GAGGAG	3 cut(s)	427, 511, 563
BseSI	GKGCMC	2 cut(s)	8, 208
BshFI	GGCC	1 cut(s)	514
BsiHKAI	GWGCWC	3 cut(s)	208, 246, 347
BsiHKCI	CYCGRG	1 cut(s)	271
BslFI	GGGAC	2 cut(s)	18, 304
BsmFI	GGGAC	2 cut(s)	18, 304
BsnI	GGCC	1 cut(s)	514
BsoBI	CYCGRG	1 cut(s)	271
Bsp119I	TTCGAA	1 cut(s)	128
Bsp1286I	GDGCHC	4 cut(s)	8, 208, 246, 347
Bsp143I	GATC	4 cut(s)	17, 49, 275, 310
BspACI	CCGC	2 cut(s)	302, 305
BspANI	GGCC	1 cut(s)	514
BspCNI	CTCAG	2 cut(s)	141, 232
BspT104I	TTCGAA	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	135
BssMI	GATC	4 cut(s)	17, 49, 275, 310
BssNI	GRCGYC	1 cut(s)	299
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	2 cut(s)	220, 364
BstACI	GRCGYC	1 cut(s)	299
BstBI	TTCGAA	1 cut(s)	128
BstDEI	CTNAG	3 cut(s)	149, 240, 524
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	4 cut(s)	20, 52, 278, 313
BstMBI	GATC	4 cut(s)	17, 49, 275, 310
BstSLI	GKGCMC	2 cut(s)	8, 208
BsuRI	GGCC	1 cut(s)	514
BtrI	CACGTC	1 cut(s)	448
BtsCI	GGATG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	512
CseI	GACGC	1 cut(s)	307
CviAII	CATG	1 cut(s)	538
CviJI	RGCY	5 cut(s)	148, 244, 283, 514, 542
CviKI_1	RGCY	5 cut(s)	148, 244, 283, 514, 542
DdeI	CTNAG	3 cut(s)	149, 240, 524
DpnI	GATC	4 cut(s)	19, 51, 277, 312
DpnII	GATC	4 cut(s)	17, 49, 275, 310
Eam1104I	CTCTTC	2 cut(s)	220, 364
EarI	CTCTTC	2 cut(s)	220, 364
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	246
Eco53kI	GAGCTC	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	271
EcoICRI	GAGCTC	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	1 cut(s)	541
FaiI	YATR	4 cut(s)	13, 338, 539, 562
FaqI	GGGAC	2 cut(s)	18, 304
FatI	CATG	1 cut(s)	537
FblI	GTMKAC	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	302, 305
FokI	GGATG	1 cut(s)	27
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	2 cut(s)	302, 305
FspBI	CTAG	2 cut(s)	189, 516
GluI	GCNGC	2 cut(s)	302, 305
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	1 cut(s)	514
HgaI	GACGC	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	1 cut(s)	541
HinfI	GANTC	1 cut(s)	505
Hpy166II	GTNNAC	3 cut(s)	140, 186, 206
Hpy188I	TCNGA	4 cut(s)	45, 241, 364, 452
Hpy8I	GTNNAC	3 cut(s)	140, 186, 206
Hpy99I	CGWCG	3 cut(s)	298, 301, 404
HpyAV	CCTTC	1 cut(s)	447
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	2 cut(s)	402, 447
HpyCH4V	TGCA	2 cut(s)	206, 445
HpyF3I	CTNAG	3 cut(s)	149, 240, 524
HpySE526I	ACGT	2 cut(s)	402, 447
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	1 cut(s)	541
Kzo9I	GATC	4 cut(s)	17, 49, 275, 310
LmnI	GCTCC	1 cut(s)	249
LpnPI	CCDG	2 cut(s)	148, 528
LweI	GCATC	3 cut(s)	33, 49, 432
MaeI	CTAG	2 cut(s)	189, 516
MaeII	ACGT	2 cut(s)	402, 447
MaeIII	GTNAC	2 cut(s)	55, 266
MalI	GATC	4 cut(s)	19, 51, 277, 312
MboI	GATC	4 cut(s)	17, 49, 275, 310
MboII	GAAGA	7 cut(s)	117, 207, 267, 381, 440, 443, 514
MhlI	GDGCHC	4 cut(s)	8, 208, 246, 347
MluCI	AATT	3 cut(s)	121, 130, 556
MmeI	TCCRAC	2 cut(s)	68, 243
MnlI	CCTC	6 cut(s)	172, 405, 489, 492, 541, 544
MseI	TTAA	1 cut(s)	167
NdeII	GATC	4 cut(s)	17, 49, 275, 310
NlaIII	CATG	1 cut(s)	541
NspV	TTCGAA	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	505
PkrI	GCNGC	2 cut(s)	303, 306
Psp124BI	GAGCTC	1 cut(s)	246
PspPI	GGNCC	1 cut(s)	512
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	2 cut(s)	302, 305
Sau3AI	GATC	4 cut(s)	17, 49, 275, 310
Sau96I	GGNCC	1 cut(s)	512
SduI	GDGCHC	4 cut(s)	8, 208, 246, 347
SetI	ASST	7 cut(s)	80, 150, 174, 239, 246, 405, 450
SfaNI	GCATC	3 cut(s)	33, 49, 432
SfuI	TTCGAA	1 cut(s)	128
Sse9I	AATT	3 cut(s)	121, 130, 556
SsiI	CCGC	2 cut(s)	302, 305
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	2 cut(s)	189, 516
SstI	GAGCTC	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	2 cut(s)	405, 450
TaqI	TCGA	2 cut(s)	128, 278
TasI	AATT	3 cut(s)	121, 130, 556
TauI	GCSGC	2 cut(s)	304, 307
TfiI	GAWTC	1 cut(s)	505
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TscAI	CASTG	1 cut(s)	396
TspDTI	ATGAA	1 cut(s)	549
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	1 cut(s)	396
VneI	GTGCAC	1 cut(s)	204
XapI	RAATTY	1 cut(s)	130
XmiI	GTMKAC	1 cut(s)	139
XspI	CTAG	2 cut(s)	189, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.