Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0008474

Physical Location & Seq

Genomic Coordinates Forward (+)

3898135 .. 3902021

Gene Structure 3887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04350.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGATACATAAAGCCTGCCAAGTTGCCAAAGAAAAGGAGGTAATAAAGAAATGGAGTAAAGAAAAAGGAGCACATTGCCATCTCCATCTCTATCTTTGGATCAGAAATTGGAGCAAAAGCAGCTGCAGGGTCCTCCACATTATTCTCATCAACCCAAATGAAACTTCTTCTTCCTCCTTCTCCTCCTCTTTCTTCCTCTCCCATCTCATTATTCTTCACCTGGACCTGCATTATCTGTTCATGCAAGATCCAAGTAACTCACAAGCAAGGAATAAGCCTTGGTATCAAAGAGCAATTGAGATGGGCAGTTTATGGAGAAGCATCAGCAATACTTCCAAGTCCACACAAGTTCCAGTGTCAACTTCATCCACGCTATGGAAAACCGCTGTTAATGTTAGGAGTGGGCACTTGGAATCGAAAACCAAAACCGAAACACGAACCAAACCATGCCCGCCTAATGTCCAAAGTGGTGGCAGTAGTACTACTACTGGAACAAACAATCACACCTTTTCTGCAGCTTCCAGTTCCAGTTCGAGTTCGAGTTCCAGTAACAATAATATTAGACATGCCAACAAACTGCGAAAATGTACCTCTCTAAAGGTTGCCACTTCATTTACAAGGGTGTGCCTTTGTGCATCAATATCTTCCTACAATGAGGTTTTCAGAGCTGAGCTTCCCCCAAGAAGAAGCAATAGTTACCCGAGAACGATCGATCGTATTCCAAGCCACTTGGTACAACTAGTAGCAGTACTACTTACCGACCAAGGAATCAGAAGAGTGTTTCGAGGTAAGTCATTGACCGACGACGTGTTGATGAGAAGGTTTGTTGTAGAAGAAGAGGCAATGATGCAAGTTAGAAGGAGAAATCAAATGGAAGTCATAAGGAGGAGAAGTGTGATGAGGAGGAAGAGGCTTGGCCCCAGTCCTCTTAGTAGAATGGTTATGGCTCAGTCCTTTTTCTCTTATTATTATTTGTGGTCAAAAGAAGAAGTAACTTCAACTTGTTTGACCACTGGTCTGGAATTCGTCACCTTGAAATCTAGAAATTTTTCGAGAACGGACTTTTTGGAGCCTGCATCCTTCGTTTTGTATTTCTTCTCCAATGACAACCATGGTTCTTTGGATGTCTTGCAGGATGCATACACATTGCGAAGAGTATCATCTAGTCCTTTAAAAATGCACTATGAGTCCAAGCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

401

Amino Acids

45.79

Weight (kDa)

10.16

Isoelectric Point (pI)

68.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59680 AT3G59680
fragaria_vesca	FvH4_4g10370 FvH4_4g10370 FvH4_4g10370 FvH4_4g10370
malus_domestica	MD04G1049300.v1.1 MD17G1178000.v1.1
prunus_persica	Prupe.1G207500_v2.0.a1 Prupe.1G207500_v2.0.a1
pyrus_communis	pycom04g04350
rosa_chinensis	RchiOBHm_Chr4g0405921
rosa_laevigata	RLG00000008816
rosa_multiflora	Rmu_sc0006506.1_g000001 Rmu_sc0007090.1_g000001
rosa_roxburghii	Rroxscaffold_5G00350600
rosa_rugosa	Rorug04G0063700 Rorug04G0063800
rosa_samantha	Rh4AG134400 Rh4BG129600 Rh4CG142200 Rh4DG128900
rosa_wichuraiana	Rw4G010960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	234
AccB7I	CCANNNNNTGG	1 cut(s)	375
AciI	CCGC	2 cut(s)	384, 452
AclWI	GGATC	2 cut(s)	107, 242
AcsI	RAATTY	2 cut(s)	1022, 1045
AfaI	GTAC	4 cut(s)	481, 589, 735, 750
AfiI	CCNNNNNNNGG	1 cut(s)	375
AflIII	ACRYGT	1 cut(s)	807
AgsI	TTSAA	2 cut(s)	999, 1036
AhdI	GACNNNNNGTC	1 cut(s)	1014
AhlI	ACTAGT	1 cut(s)	739
AjiI	CACGTC	1 cut(s)	808
AjnI	CCWGG	1 cut(s)	219
AjuI	GAANNNNNNNTTGG	2 cut(s)	148, 180
AluBI	AGCT	4 cut(s)	123, 518, 668, 673
AluI	AGCT	4 cut(s)	123, 518, 668, 673
Alw21I	GWGCWC	1 cut(s)	73
AlwI	GGATC	2 cut(s)	107, 242
Ama87I	CYCGRG	1 cut(s)	700
AoxI	GGCC	1 cut(s)	916
ApeKI	GCWGC	3 cut(s)	120, 123, 515
ApoI	RAATTY	2 cut(s)	1022, 1045
Asp700I	GAANNNNTTC	1 cut(s)	1048
AspS9I	GGNCC	3 cut(s)	130, 223, 917
AsuHPI	GGTGA	2 cut(s)	209, 1021
AvaI	CYCGRG	1 cut(s)	700
AvaII	GGWCC	2 cut(s)	130, 223
BaeGI	GKGCMC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	3 cut(s)	110, 132, 527
BccI	CCATC	4 cut(s)	87, 93, 210, 295
BciT130I	CCWGG	1 cut(s)	221
BcuI	ACTAGT	1 cut(s)	739
BfaI	CTAG	3 cut(s)	740, 1041, 1164
BfmI	CTRYAG	2 cut(s)	124, 513
BfuAI	ACCTGC	1 cut(s)	234
BisI	GCNGC	3 cut(s)	121, 124, 516
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	3 cut(s)	122, 125, 517
BmcAI	AGTACT	2 cut(s)	481, 750
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	2 cut(s)	130, 223
BmeRI	GACNNNNNGTC	1 cut(s)	1014
BmeT110I	CYCGRG	1 cut(s)	700
BmgBI	CACGTC	1 cut(s)	808
BmgT120I	GGNCC	3 cut(s)	130, 223, 917
BmiI	GGNNCC	3 cut(s)	131, 919, 1071
BmrFI	CCNGG	1 cut(s)	221
BmrI	ACTGGG	1 cut(s)	915
BmsI	GCATC	5 cut(s)	330, 644, 837, 1085, 1126
BmuI	ACTGGG	1 cut(s)	915
Bpu1102I	GCTNAGC	1 cut(s)	669
Bsa29I	ATCGAT	1 cut(s)	711
BsaJI	CCNNGG	3 cut(s)	278, 763, 1111
BsaXI	ACNNNNNCTCC	2 cut(s)	877, 907
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
Bse1I	ACTGG	7 cut(s)	353, 493, 522, 528, 546, 921, 1018
Bse3DI	GCAATG	3 cut(s)	73, 849, 1145
BseBI	CCWGG	1 cut(s)	221
BseCI	ATCGAT	1 cut(s)	711
BseDI	CCNNGG	3 cut(s)	278, 763, 1111
BseGI	GGATG	4 cut(s)	365, 1076, 1129, 1141
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseMI	GCAATG	3 cut(s)	73, 849, 1145
BseMII	CTCAG	2 cut(s)	660, 962
BseNI	ACTGG	7 cut(s)	353, 493, 522, 528, 546, 921, 1018
BseRI	GAGGAG	4 cut(s)	172, 175, 901, 916
BseSI	GKGCMC	1 cut(s)	408
BseXI	GCAGC	3 cut(s)	110, 132, 527
Bsh1285I	CGRYCG	2 cut(s)	711, 715
BshFI	GGCC	1 cut(s)	918
BshVI	ATCGAT	1 cut(s)	711
BsiEI	CGRYCG	2 cut(s)	711, 715
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	700
BslI	CCNNNNNNNGG	1 cut(s)	375
BsnI	GGCC	1 cut(s)	918
BsoBI	CYCGRG	1 cut(s)	700
Bsp1286I	GDGCHC	2 cut(s)	73, 408
Bsp143I	GATC	4 cut(s)	99, 247, 708, 712
Bsp1720I	GCTNAGC	1 cut(s)	669
Bsp19I	CCATGG	1 cut(s)	1111
BspACI	CCGC	2 cut(s)	384, 452
BspANI	GGCC	1 cut(s)	918
BspCNI	CTCAG	2 cut(s)	661, 961
BspDI	ATCGAT	1 cut(s)	711
BspLI	GGNNCC	3 cut(s)	131, 919, 1071
BspMAI	CTGCAG	2 cut(s)	128, 517
BspMI	ACCTGC	1 cut(s)	234
BspPI	GGATC	2 cut(s)	107, 242
BsrDI	GCAATG	3 cut(s)	73, 849, 1145
BsrI	ACTGG	7 cut(s)	353, 493, 522, 528, 546, 921, 1018
BssECI	CCNNGG	3 cut(s)	278, 763, 1111
BssMI	GATC	4 cut(s)	99, 247, 708, 712
BssT1I	CCWWGG	3 cut(s)	278, 763, 1111
Bst2UI	CCWGG	1 cut(s)	221
Bst6I	CTCTTC	4 cut(s)	769, 831, 902, 1147
BstC8I	GCNNGC	3 cut(s)	16, 452, 1074
BstDEI	CTNAG	3 cut(s)	669, 929, 948
BstDSI	CCRYGG	1 cut(s)	1111
BstF5I	GGATG	4 cut(s)	365, 1076, 1129, 1141
BstKTI	GATC	4 cut(s)	102, 250, 711, 715
BstMBI	GATC	4 cut(s)	99, 247, 708, 712
BstMCI	CGRYCG	2 cut(s)	711, 715
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	569
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	2 cut(s)	124, 513
BstSLI	GKGCMC	1 cut(s)	408
BstV1I	GCAGC	3 cut(s)	110, 132, 527
BstX2I	RGATCY	1 cut(s)	247
BstXI	CCANNNNNNTGG	2 cut(s)	470, 1018
BstYI	RGATCY	1 cut(s)	247
Bsu15I	ATCGAT	1 cut(s)	711
BsuRI	GGCC	1 cut(s)	918
BsuTUI	ATCGAT	1 cut(s)	711
BtgI	CCRYGG	1 cut(s)	1111
BtrI	CACGTC	1 cut(s)	808
BtsCI	GGATG	4 cut(s)	365, 1076, 1129, 1141
BtsIMutI	CAGTG	2 cut(s)	360, 1011
BveI	ACCTGC	1 cut(s)	234
Cac8I	GCNNGC	3 cut(s)	16, 452, 1074
Cfr13I	GGNCC	3 cut(s)	130, 223, 917
ClaI	ATCGAT	1 cut(s)	711
Csp6I	GTAC	4 cut(s)	480, 588, 734, 749
CviAII	CATG	4 cut(s)	241, 447, 566, 1112
CviQI	GTAC	4 cut(s)	480, 588, 734, 749
DdeI	CTNAG	3 cut(s)	669, 929, 948
DpnI	GATC	4 cut(s)	101, 249, 710, 714
DpnII	GATC	4 cut(s)	99, 247, 708, 712
DraI	TTTAAA	1 cut(s)	1173
DriI	GACNNNNNGTC	1 cut(s)	1014
Eam1104I	CTCTTC	4 cut(s)	769, 831, 902, 1147
Eam1105I	GACNNNNNGTC	1 cut(s)	1014
EarI	CTCTTC	4 cut(s)	769, 831, 902, 1147
Eco130I	CCWWGG	3 cut(s)	278, 763, 1111
Eco47I	GGWCC	2 cut(s)	130, 223
Eco88I	CYCGRG	1 cut(s)	700
EcoO109I	RGGNCCY	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	1022
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	3 cut(s)	278, 763, 1111
EcoT22I	ATGCAT	1 cut(s)	1141
ErhI	CCWWGG	3 cut(s)	278, 763, 1111
FaeI	CATG	4 cut(s)	244, 450, 569, 1115
FatI	CATG	4 cut(s)	240, 446, 565, 1111
FauI	CCCGC	1 cut(s)	459
Fnu4HI	GCNGC	3 cut(s)	121, 124, 516
FokI	GGATG	4 cut(s)	352, 1063, 1136, 1148
Fsp4HI	GCNGC	3 cut(s)	121, 124, 516
FspBI	CTAG	3 cut(s)	740, 1041, 1164
GluI	GCNGC	3 cut(s)	121, 124, 516
HaeIII	GGCC	1 cut(s)	918
Hin1II	CATG	4 cut(s)	244, 450, 569, 1115
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	3 cut(s)	413, 768, 1187
HphI	GGTGA	2 cut(s)	209, 1021
Hpy166II	GTNNAC	2 cut(s)	342, 360
Hpy188I	TCNGA	3 cut(s)	104, 665, 773
Hpy188III	TCNNGA	3 cut(s)	1019, 1041, 1053
Hpy8I	GTNNAC	2 cut(s)	342, 360
Hpy99I	CGWCG	2 cut(s)	806, 809
HpyAV	CCTTC	4 cut(s)	187, 813, 852, 1090
HpyCH4IV	ACGT	1 cut(s)	807
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	3 cut(s)	669, 929, 948
HpySE526I	ACGT	1 cut(s)	807
Hsp92II	CATG	4 cut(s)	244, 450, 569, 1115
Kzo9I	GATC	4 cut(s)	99, 247, 708, 712
LmnI	GCTCC	3 cut(s)	68, 111, 1069
Lsp1109I	GCAGC	3 cut(s)	110, 132, 527
LweI	GCATC	5 cut(s)	330, 644, 837, 1085, 1126
MaeI	CTAG	3 cut(s)	740, 1041, 1164
MaeII	ACGT	1 cut(s)	807
MaeIII	GTNAC	5 cut(s)	254, 548, 695, 991, 1027
MalI	GATC	4 cut(s)	101, 249, 710, 714
MboI	GATC	4 cut(s)	99, 247, 708, 712
MfeI	CAATTG	1 cut(s)	294
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	2 cut(s)	73, 408
MluCI	AATT	4 cut(s)	106, 294, 1022, 1045
MlyI	GAGTC	1 cut(s)	1196
Mph1103I	ATGCAT	1 cut(s)	1141
MroXI	GAANNNNTTC	1 cut(s)	1048
MseI	TTAA	2 cut(s)	390, 1172
MspA1I	CMGCKG	2 cut(s)	123, 386
MspR9I	CCNGG	1 cut(s)	221
MunI	CAATTG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	120
NcoI	CCATGG	1 cut(s)	1111
NdeII	GATC	4 cut(s)	99, 247, 708, 712
NlaIII	CATG	4 cut(s)	244, 450, 569, 1115
NlaIV	GGNNCC	3 cut(s)	131, 919, 1071
NmuCI	GTSAC	1 cut(s)	1027
NsiI	ATGCAT	1 cut(s)	1141
NspI	RCATGY	1 cut(s)	569
PdmI	GAANNNNTTC	1 cut(s)	1048
PfeI	GAWTC	2 cut(s)	413, 768
PflMI	CCANNNNNTGG	1 cut(s)	375
PkrI	GCNGC	3 cut(s)	122, 125, 517
Ple19I	CGATCG	2 cut(s)	711, 715
PleI	GAGTC	1 cut(s)	1195
PpsI	GAGTC	1 cut(s)	1195
PpuMI	RGGWCCY	1 cut(s)	130
Psp5II	RGGWCCY	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	3 cut(s)	131, 919, 1071
PspPI	GGNCC	3 cut(s)	130, 223, 917
PspPPI	RGGWCCY	1 cut(s)	130
PstI	CTGCAG	2 cut(s)	128, 517
PsuI	RGATCY	1 cut(s)	247
PvuI	CGATCG	2 cut(s)	711, 715
PvuII	CAGCTG	1 cut(s)	123
RsaI	GTAC	4 cut(s)	481, 589, 735, 750
RsaNI	GTAC	4 cut(s)	480, 588, 734, 749
SaqAI	TTAA	2 cut(s)	390, 1172
SatI	GCNGC	3 cut(s)	121, 124, 516
Sau3AI	GATC	4 cut(s)	99, 247, 708, 712
Sau96I	GGNCC	3 cut(s)	130, 223, 917
ScaI	AGTACT	2 cut(s)	481, 750
SchI	GAGTC	1 cut(s)	1196
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	2 cut(s)	73, 408
SfaNI	GCATC	5 cut(s)	330, 644, 837, 1085, 1126
SfcI	CTRYAG	2 cut(s)	124, 513
SinI	GGWCC	2 cut(s)	130, 223
SpeI	ACTAGT	1 cut(s)	739
Sse9I	AATT	4 cut(s)	106, 294, 1022, 1045
SsiI	CCGC	2 cut(s)	384, 452
SspI	AATATT	1 cut(s)	559
SspMI	CTAG	3 cut(s)	740, 1041, 1164
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	3 cut(s)	278, 763, 1111
TaiI	ACGT	1 cut(s)	810
TaqI	TCGA	6 cut(s)	416, 533, 539, 711, 784, 1052
TaqII	GACCGA	1 cut(s)	815
TasI	AATT	4 cut(s)	106, 294, 1022, 1045
TatI	WGTACW	2 cut(s)	479, 748
TfiI	GAWTC	2 cut(s)	413, 768
Tru1I	TTAA	2 cut(s)	390, 1172
Tru9I	TTAA	2 cut(s)	390, 1172
TscAI	CASTG	2 cut(s)	360, 1018
TseFI	GTSAC	1 cut(s)	1027
TseI	GCWGC	3 cut(s)	120, 123, 515
Tsp45I	GTSAC	1 cut(s)	1027
TspDTI	ATGAA	4 cut(s)	174, 229, 354, 600
TspGWI	ACGGA	1 cut(s)	1073
TspRI	CASTG	2 cut(s)	360, 1018
Van91I	CCANNNNNTGG	1 cut(s)	375
VpaK11BI	GGWCC	2 cut(s)	130, 223
XapI	RAATTY	2 cut(s)	1022, 1045
XbaI	TCTAGA	1 cut(s)	1040
XceI	RCATGY	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	1048
XspI	CTAG	3 cut(s)	740, 1041, 1164
ZrmI	AGTACT	2 cut(s)	481, 750
Zsp2I	ATGCAT	1 cut(s)	1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.