Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008474

Physical Location & Seq

Genomic Coordinates Forward (+)

21217844 .. 21220473

Gene Structure 2630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G207500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCAAGATCCAAAGAAGTCACAAGCAAGGAATAATAAGCCTTGGTATCAAAGAGCAAGAGAGATGGGCATGGGCAGTCTATGGAGAAGCATCAACAATAACAATTCAAAGTCCACACAAGTTCCAGCAGCAAATTCCACGCTATGGAAAACCCTAGTCAATGCCAAAAGCAGTCCCGGCACAAACCCTAATAATTTTCCTGCACCAAATTCCAACTCCAATTCCAATTCCAATAATGTTAGGCACAAACTGAGAAAATGTACCTCTCTAAAGGTTGCCACGTCATTTACAAGGGTGTGTCTTTGTGCACCAATATCTTCCTACAATGAGGTTTTTAGGGCTGAGCTTCCCCCAAGAAGAAGCAATAGCTACCCAAGAATGGGGTCCTATTCCAAGCCATTGGGCACAACAACTACTTCTAGTGCCAGCATTGCGCAAGCACGGCTTAGCACTGATCATCCAGGAATTAGAAGAGTGTTTCGGGGAAAGTCGCTGACCGACGACGTTTTGATGAGAAGGTTTGTGGTGGAAGAAGAAGCAATGATGCAGGTTAGAAGGAGAAATCAAATGGAAGTCATAAGGAGAAGAAGTGTGATGAGGAGGAAGAGGCTTGGGCCTAGTCCTCTTTGTAGAATGGTTTTGGCTGAGGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

24.75

Weight (kDa)

11.33

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59680 AT3G59680
fragaria_vesca	FvH4_4g10370 FvH4_4g10370 FvH4_4g10370 FvH4_4g10370
malus_domestica	MD04G1049300.v1.1 MD17G1178000.v1.1
prunus_persica	Prupe.1G207500_v2.0.a1 Prupe.1G207500_v2.0.a1
pyrus_communis	pycom04g04350
rosa_chinensis	RchiOBHm_Chr4g0405921
rosa_laevigata	RLG00000008816
rosa_multiflora	Rmu_sc0006506.1_g000001 Rmu_sc0007090.1_g000001
rosa_roxburghii	Rroxscaffold_5G00350600
rosa_rugosa	Rorug04G0063700 Rorug04G0063800
rosa_samantha	Rh4AG134400 Rh4BG129600 Rh4CG142200 Rh4DG128900
rosa_wichuraiana	Rw4G010960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	435
Acc36I	ACCTGC	1 cut(s)	538
AccB7I	CCANNNNNTGG	1 cut(s)	144
AclWI	GGATC	1 cut(s)	2
AcsI	RAATTY	2 cut(s)	133, 208
AfaI	GTAC	1 cut(s)	262
AfiI	CCNNNNNNNGG	3 cut(s)	144, 379, 380
AgsI	TTSAA	1 cut(s)	108
AjiI	CACGTC	1 cut(s)	282
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	2 cut(s)	346, 369
AluI	AGCT	2 cut(s)	346, 369
Alw21I	GWGCWC	1 cut(s)	310
Alw44I	GTGCAC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	2
AoxI	GGCC	1 cut(s)	614
ApaLI	GTGCAC	1 cut(s)	306
ApeKI	GCWGC	1 cut(s)	128
ApoI	RAATTY	2 cut(s)	133, 208
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	2 cut(s)	384, 614
AsuC2I	CCSGG	1 cut(s)	177
AvaII	GGWCC	1 cut(s)	384
BaeGI	GKGCMC	2 cut(s)	310, 407
Bbv12I	GWGCWC	1 cut(s)	310
BbvCI	CCTCAGC	1 cut(s)	645
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	458
BciT130I	CCWGG	1 cut(s)	462
BclI	TGATCA	1 cut(s)	454
BcnI	CCSGG	1 cut(s)	177
BfaI	CTAG	3 cut(s)	155, 420, 618
BfuAI	ACCTGC	1 cut(s)	538
BisI	GCNGC	1 cut(s)	129
BlpI	GCTNAGC	2 cut(s)	342, 446
BlsI	GCNGC	1 cut(s)	130
Bme1390I	CCNGG	2 cut(s)	177, 462
Bme18I	GGWCC	1 cut(s)	384
BmgBI	CACGTC	1 cut(s)	282
BmgT120I	GGNCC	2 cut(s)	384, 614
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	2 cut(s)	177, 462
BmsI	GCATC	2 cut(s)	99, 534
Bpu10I	CCTNAGC	1 cut(s)	645
Bpu1102I	GCTNAGC	2 cut(s)	342, 446
BpuMI	CCSGG	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	41
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 379, 380
Bse3DI	GCAATG	2 cut(s)	429, 546
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	41
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	3 cut(s)	144, 379, 380
BseMI	GCAATG	2 cut(s)	429, 546
BseMII	CTCAG	3 cut(s)	242, 333, 636
BseRI	GAGGAG	1 cut(s)	613
BseSI	GKGCMC	2 cut(s)	310, 407
BseXI	GCAGC	1 cut(s)	140
BsgI	GTGCAG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	616
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	159
BslI	CCNNNNNNNGG	3 cut(s)	144, 379, 380
BsmFI	GGGAC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	616
Bsp1286I	GDGCHC	2 cut(s)	310, 407
Bsp143I	GATC	2 cut(s)	7, 454
Bsp1720I	GCTNAGC	2 cut(s)	342, 446
BspANI	GGCC	1 cut(s)	616
BspCNI	CTCAG	3 cut(s)	243, 334, 637
BspLI	GGNNCC	1 cut(s)	385
BspMI	ACCTGC	1 cut(s)	538
BspPI	GGATC	1 cut(s)	2
BsrDI	GCAATG	2 cut(s)	429, 546
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	2 cut(s)	7, 454
BssT1I	CCWWGG	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	462
Bst6I	CTCTTC	2 cut(s)	466, 599
BstC8I	GCNNGC	2 cut(s)	427, 438
BstDEI	CTNAG	4 cut(s)	251, 342, 446, 645
BstF5I	GGATG	1 cut(s)	457
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	2 cut(s)	10, 457
BstMBI	GATC	2 cut(s)	7, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 431, 442
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	2 cut(s)	175, 460
BstSLI	GKGCMC	2 cut(s)	310, 407
BstV1I	GCAGC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	7
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	616
BtrI	CACGTC	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	450
BveI	ACCTGC	1 cut(s)	538
Cac8I	GCNNGC	2 cut(s)	427, 438
CfoI	GCGC	1 cut(s)	436
Cfr13I	GGNCC	2 cut(s)	384, 614
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	9 cut(s)	40, 341, 346, 369, 397, 445, 610, 616, 644
CviKI_1	RGCY	9 cut(s)	40, 341, 346, 369, 397, 445, 610, 616, 644
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	4 cut(s)	251, 342, 446, 645
DpnI	GATC	2 cut(s)	9, 456
DpnII	GATC	2 cut(s)	7, 454
Eam1104I	CTCTTC	2 cut(s)	466, 599
EarI	CTCTTC	2 cut(s)	466, 599
Eco130I	CCWWGG	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	384
EcoO109I	RGGNCCY	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	1 cut(s)	73
FaiI	YATR	4 cut(s)	71, 82, 145, 578
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	1 cut(s)	444
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	3 cut(s)	155, 420, 618
FspI	TGCGCA	1 cut(s)	435
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	616
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	1 cut(s)	73
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HpaII	CCGG	1 cut(s)	177
Hpy166II	GTNNAC	2 cut(s)	114, 308
Hpy8I	GTNNAC	2 cut(s)	114, 308
Hpy99I	CGWCG	2 cut(s)	503, 506
HpyAV	CCTTC	2 cut(s)	510, 549
HpyCH4IV	ACGT	2 cut(s)	281, 504
HpyCH4V	TGCA	4 cut(s)	4, 203, 308, 547
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 431, 442
HpyF3I	CTNAG	4 cut(s)	251, 342, 446, 645
HpySE526I	ACGT	2 cut(s)	281, 504
Hsp92II	CATG	1 cut(s)	73
HspAI	GCGC	1 cut(s)	434
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	2 cut(s)	7, 454
LpnPI	CCDG	7 cut(s)	138, 190, 213, 439, 447, 474, 533
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	2 cut(s)	99, 534
MaeI	CTAG	3 cut(s)	155, 420, 618
MaeII	ACGT	2 cut(s)	281, 504
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	2 cut(s)	9, 456
MboI	GATC	2 cut(s)	7, 454
MboII	GAAGA	7 cut(s)	309, 369, 483, 542, 545, 597, 616
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	2 cut(s)	310, 407
MluCI	AATT	7 cut(s)	103, 133, 193, 208, 220, 226, 465
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	8 cut(s)	274, 322, 591, 594, 600, 633, 640, 643
MseI	TTAA	1 cut(s)	655
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	2 cut(s)	177, 462
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	177, 431, 442
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	2 cut(s)	7, 454
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	1 cut(s)	385
NmuCI	GTSAC	1 cut(s)	18
NsbI	TGCGCA	1 cut(s)	435
PflMI	CCANNNNNTGG	1 cut(s)	144
PfoI	TCCNGGA	1 cut(s)	460
PkrI	GCNGC	1 cut(s)	130
PpuMI	RGGWCCY	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	2 cut(s)	384, 614
PspPPI	RGGWCCY	1 cut(s)	384
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	655
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	2 cut(s)	7, 454
Sau96I	GGNCC	2 cut(s)	384, 614
ScrFI	CCNGG	2 cut(s)	177, 462
SduI	GDGCHC	2 cut(s)	310, 407
SetI	ASST	9 cut(s)	266, 276, 284, 333, 348, 371, 507, 521, 552
SfaNI	GCATC	2 cut(s)	99, 534
SinI	GGWCC	1 cut(s)	384
Sse9I	AATT	7 cut(s)	103, 133, 193, 208, 220, 226, 465
SspMI	CTAG	3 cut(s)	155, 420, 618
StyD4I	CCNGG	2 cut(s)	175, 460
StyI	CCWWGG	1 cut(s)	41
TaiI	ACGT	2 cut(s)	284, 507
TaqII	GACCGA	1 cut(s)	512
TasI	AATT	7 cut(s)	103, 133, 193, 208, 220, 226, 465
Tru1I	TTAA	1 cut(s)	655
Tru9I	TTAA	1 cut(s)	655
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	1 cut(s)	18
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	18
TspRI	CASTG	1 cut(s)	457
Van91I	CCANNNNNTGG	1 cut(s)	144
VneI	GTGCAC	1 cut(s)	306
VpaK11BI	GGWCC	1 cut(s)	384
XapI	RAATTY	2 cut(s)	133, 208
XspI	CTAG	3 cut(s)	155, 420, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.