Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008354

Physical Location & Seq

Genomic Coordinates Reverse (-)

22102647 .. 22105441

Gene Structure 2795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G59830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGGACAACATTGCCGCGCAGTTGAAGCGTGGGATATCGAGACAATTCTCGACAGGATCAATGAGACGAACATTAAGCCGACAATTCACGCGCCAAAATTCTCTCGATCCACGGCGTAACAACATGAGATTCAGCTTCGGTCGTCAATCTTCGCTTGATCCGATCAGACGTAGTCCTGAGTCTCTTAGCTGCGAGCCGCATATGTCTGTCCCCGAGAATCTTGATTCGACGATGCAGCTTCTCTTTATGGCGAGTAAAGGTGATGTTAATGGCGTTGAGGAGCTGCTTAATGAAGGAATAGATGTGAATAGCATTGATCTTGATGGTCGTACTGCTCTTCACATTGCTTCCTGTGAAGGTCATTATGATGTTGTTAAGGTTCTTCTTAGCCGGAGAGCTAATATCGATGCTCGTGATCGTTGGGGTAGTACGGCGGCTGTTGATGCAAAGTATTATGGGAATGTTGAAGTTTATAATCTCTTGAAAGCTCGAGGCGCTAAAGCTCCGAAAACTAGAAAGACTCCAATGACGGTAGGGAATCCAAAAGAAGTTCCTGAGTATGAGCTTAATCCACTCGAGCTGCAAGTCCGAAAAGTTGATGGCATTTCAAAGGGAACTTATCAAGTTGCTAAATGGAATGGCACGCGAGTCTCAGTAAAAATATTCGATAAAGATAGCTATTCAGATCCTGAACGAGTAAATGCTTTCACAAACGAATTGACTTTGCTAGCAAAAGCTCGGCATCCAAATATTGTTCAATTTGTTGGAGCCGTCACTCAAAATCTACCGATGATGATTGTAGTTGAGTGTAATCCAAAAGGTGATCTAAGTGTCTATCTTCAAAAGAAAGGTCGTCTTTCTCCTTCAAAAGCTCTGAGATTTGCTCTTGATATTGCTAGAGGAATGAACTACCTCCATGAATGTAAACCAGATCCGATCATCCACTGCGAGTTAATGCCAAAAAATATTTTGCTAGATAGAGGAGGGCAATTGAAGATCTCTGGTTTTGGTTTGATAAAGTTGTCAAAGATTGGAGAAGACAGTGCAAAAGTAGTGAACCACGAAGCTCAAATCGATAAGTCAAATTACTATATAGCACCCGAAATTTACAAAGATGAAGTCTTCGATAAAAGGGCTGATGTGCATTCGTTTGGTGTCATTTTGTACGAGTTGACCGAGGGAGTATCTTTATTCCATCCTAAACCACCTGAAGAGGTTGCAGAATCGATTTGTATAGAAGGTAAAAGACCAACAATCAGAACAAAGTCAAAGAGTTACCCTCCGGAATTGAAAGAGTTGATTGAGGAATGCTGGCATCCAGAAATCAGTGTGAGGCCAATATTCTCTGAGATTATTATTCGGCTCGACAAGATAGTTACAAACTGTTCCAAGCAGGGTTGGTGGAAAGACACATTTAAGTTCCCTTGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009898 GO:0009987 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045087 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098552 GO:0098562 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Pkinase_Tyr

Protein Analysis

477

Amino Acids

54.02

Weight (kDa)

9.02

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	81 - 167	3.3e-13	Ankyrin repeats (3 copies)
Ank_4	PF13637	84 - 129	3.7e-07	Ankyrin repeats (many copies)
Ank_5	PF13857	95 - 145	2.5e-08	Ankyrin repeats (many copies)
Ank	PF00023	108 - 140	5.7e-10	Ankyrin repeat
PK_Tyr_Ser-Thr	PF07714	202 - 454	8.4e-48	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	209 - 451	1.9e-39	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31800 AT2G43850 AT2G43850 AT2G43850 AT3G59830
fragaria_vesca	FvH4_1g00360 FvH4_1g00360
malus_domestica	MD02G1002900.v1.1 MD05G1054300.v1.1 MD15G1146100.v1.1
prunus_persica	Prupe.7G268300_v2.0.a1
pyrus_communis	pycom02g00150 pycom15g13120
rosa_chinensis	RchiOBHm_Chr2g0084791
rosa_laevigata	RLG00000015639
rosa_multiflora	Rmu_sc0002352.1_g000001 Rmu_ssc0000436.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155810
rosa_rugosa	Rorug01G0456300
rosa_samantha	Rh2BG005000 Rh2CG005400 Rh2DG004800
rosa_wichuraiana	Rw2G000390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	474
AccII	CGCG	3 cut(s)	17, 91, 646
AccIII	TCCGGA	1 cut(s)	1282
AciI	CCGC	3 cut(s)	15, 197, 434
AclWI	GGATC	5 cut(s)	64, 101, 152, 680, 926
AcsI	RAATTY	2 cut(s)	97, 1104
AcuI	CTGAAG	1 cut(s)	1230
AfaI	GTAC	3 cut(s)	331, 430, 1166
AgsI	TTSAA	9 cut(s)	25, 467, 484, 609, 758, 842, 867, 994, 1291
Alw26I	GTCTC	4 cut(s)	34, 58, 186, 655
AlwI	GGATC	5 cut(s)	64, 101, 152, 680, 926
AlwNI	CAGNNNCTG	1 cut(s)	689
Ama87I	CYCGRG	3 cut(s)	212, 489, 575
Aor13HI	TCCGGA	1 cut(s)	1282
AoxI	GGCC	1 cut(s)	1334
ApeKI	GCWGC	4 cut(s)	189, 235, 283, 580
ApoI	RAATTY	2 cut(s)	97, 1104
ArsI	GACNNNNNNTTYG	4 cut(s)	835, 867, 1104, 1136
AspLEI	GCGC	3 cut(s)	19, 93, 497
AsuHPI	GGTGA	2 cut(s)	272, 833
AsuNHI	GCTAGC	1 cut(s)	727
AvaI	CYCGRG	3 cut(s)	212, 489, 575
BauI	CACGAG	1 cut(s)	411
BbsI	GAAGAC	2 cut(s)	1044, 1114
BbvI	GCAGC	4 cut(s)	176, 247, 270, 567
BccI	CCATC	3 cut(s)	317, 593, 1203
BceAI	ACGGC	3 cut(s)	128, 447, 755
BcoDI	GTCTC	4 cut(s)	34, 58, 186, 655
BfaI	CTAG	4 cut(s)	513, 728, 897, 974
BfoI	RGCGCY	1 cut(s)	498
BglII	AGATCT	1 cut(s)	996
BisI	GCNGC	7 cut(s)	15, 190, 197, 236, 284, 435, 581
BlsI	GCNGC	7 cut(s)	16, 191, 198, 237, 285, 436, 582
BmeT110I	CYCGRG	3 cut(s)	212, 489, 575
BmiI	GGNNCC	1 cut(s)	769
BmsI	GCATC	5 cut(s)	222, 397, 433, 751, 1324
BmtI	GCTAGC	1 cut(s)	731
BpiI	GAAGAC	2 cut(s)	1044, 1114
BplI	GAGNNNNNCTC	4 cut(s)	868, 900, 1264, 1296
Bsa29I	ATCGAT	3 cut(s)	405, 1074, 1226
BsaJI	CCNNGG	3 cut(s)	110, 1176, 1424
BsaWI	WCCGGW	1 cut(s)	1282
Bse3DI	GCAATG	2 cut(s)	9, 342
BseAI	TCCGGA	1 cut(s)	1282
BseCI	ATCGAT	3 cut(s)	405, 1074, 1226
BseDI	CCNNGG	3 cut(s)	110, 1176, 1424
BseGI	GGATG	4 cut(s)	742, 939, 1195, 1315
BseMI	GCAATG	2 cut(s)	9, 342
BseMII	CTCAG	5 cut(s)	168, 546, 666, 866, 1338
BseRI	GAGGAG	2 cut(s)	293, 996
BseXI	GCAGC	4 cut(s)	176, 247, 270, 567
Bsh1236I	CGCG	3 cut(s)	17, 91, 646
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	1 cut(s)	1336
BshVI	ATCGAT	3 cut(s)	405, 1074, 1226
BsiEI	CGRYCG	1 cut(s)	142
BsiHKCI	CYCGRG	3 cut(s)	212, 489, 575
BsiSI	CCGG	2 cut(s)	391, 1283
BslFI	GGGAC	1 cut(s)	194
BsmAI	GTCTC	4 cut(s)	34, 58, 186, 655
BsmBI	CGTCTC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	2 cut(s)	1144, 1313
BsnI	GGCC	1 cut(s)	1336
BsoBI	CYCGRG	3 cut(s)	212, 489, 575
Bsp13I	TCCGGA	1 cut(s)	1282
BspACI	CCGC	3 cut(s)	15, 197, 434
BspANI	GGCC	1 cut(s)	1336
BspCNI	CTCAG	5 cut(s)	169, 547, 665, 867, 1339
BspDI	ATCGAT	3 cut(s)	405, 1074, 1226
BspEI	TCCGGA	1 cut(s)	1282
BspFNI	CGCG	3 cut(s)	17, 91, 646
BspLI	GGNNCC	1 cut(s)	769
BspOI	GCTAGC	1 cut(s)	731
BspPI	GGATC	5 cut(s)	64, 101, 152, 680, 926
BspQI	GCTCTTC	1 cut(s)	342
BsrDI	GCAATG	2 cut(s)	9, 342
BssECI	CCNNGG	3 cut(s)	110, 1176, 1424
BssSI	CACGAG	1 cut(s)	411
BssT1I	CCWWGG	1 cut(s)	1424
Bst2BI	CACGAG	1 cut(s)	411
Bst4CI	ACNGT	3 cut(s)	532, 1043, 1385
Bst6I	CTCTTC	2 cut(s)	342, 1206
BstC8I	GCNNGC	4 cut(s)	194, 644, 729, 1313
BstDEI	CTNAG	8 cut(s)	177, 185, 386, 555, 652, 827, 875, 1347
BstDSI	CCRYGG	1 cut(s)	110
BstF5I	GGATG	4 cut(s)	742, 939, 1195, 1315
BstFNI	CGCG	3 cut(s)	17, 91, 646
BstH2I	RGCGCY	1 cut(s)	498
BstHHI	GCGC	3 cut(s)	19, 93, 497
BstMAI	GTCTC	4 cut(s)	34, 58, 186, 655
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 443, 494
BstUI	CGCG	3 cut(s)	17, 91, 646
BstV1I	GCAGC	4 cut(s)	176, 247, 270, 567
BstV2I	GAAGAC	2 cut(s)	1044, 1114
BstX2I	RGATCY	3 cut(s)	685, 931, 996
BstYI	RGATCY	3 cut(s)	685, 931, 996
Bsu15I	ATCGAT	3 cut(s)	405, 1074, 1226
BsuRI	GGCC	1 cut(s)	1336
BsuTUI	ATCGAT	3 cut(s)	405, 1074, 1226
BtgI	CCRYGG	1 cut(s)	110
BtsCI	GGATG	4 cut(s)	742, 939, 1195, 1315
BtsI	GCAGTG	1 cut(s)	943
BtsIMutI	CAGTG	3 cut(s)	943, 1048, 1333
Cac8I	GCNNGC	4 cut(s)	194, 644, 729, 1313
CaiI	CAGNNNCTG	1 cut(s)	689
CfoI	GCGC	3 cut(s)	19, 93, 497
ClaI	ATCGAT	3 cut(s)	405, 1074, 1226
Csp6I	GTAC	3 cut(s)	330, 429, 1165
CviAII	CATG	2 cut(s)	124, 917
CviQI	GTAC	3 cut(s)	330, 429, 1165
DdeI	CTNAG	8 cut(s)	177, 185, 386, 555, 652, 827, 875, 1347
Eam1104I	CTCTTC	2 cut(s)	342, 1206
EarI	CTCTTC	2 cut(s)	342, 1206
Eco130I	CCWWGG	1 cut(s)	1424
Eco32I	GATATC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	1230
Eco88I	CYCGRG	3 cut(s)	212, 489, 575
EcoRV	GATATC	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	1424
ErhI	CCWWGG	1 cut(s)	1424
Esp3I	CGTCTC	1 cut(s)	58
FaeI	CATG	2 cut(s)	127, 920
FalI	AAGNNNNNCTT	2 cut(s)	840, 872
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	2 cut(s)	123, 916
FauNDI	CATATG	1 cut(s)	201
Fnu4HI	GCNGC	7 cut(s)	15, 190, 197, 236, 284, 435, 581
FokI	GGATG	4 cut(s)	729, 926, 1182, 1302
Fsp4HI	GCNGC	7 cut(s)	15, 190, 197, 236, 284, 435, 581
FspBI	CTAG	4 cut(s)	513, 728, 897, 974
GlaI	GCGC	3 cut(s)	18, 92, 496
GluI	GCNGC	7 cut(s)	15, 190, 197, 236, 284, 435, 581
HaeII	RGCGCY	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	1336
HapII	CCGG	2 cut(s)	391, 1283
HhaI	GCGC	3 cut(s)	19, 93, 497
Hin1II	CATG	2 cut(s)	127, 920
Hin6I	GCGC	3 cut(s)	17, 91, 495
HinP1I	GCGC	3 cut(s)	17, 91, 495
HincII	GTYRAC	1 cut(s)	1173
HindII	GTYRAC	1 cut(s)	1173
HinfI	GANTC	8 cut(s)	129, 179, 217, 224, 520, 538, 648, 1223
HpaII	CCGG	2 cut(s)	391, 1283
HphI	GGTGA	2 cut(s)	272, 833
Hpy166II	GTNNAC	3 cut(s)	926, 1057, 1173
Hpy188I	TCNGA	9 cut(s)	162, 167, 507, 590, 685, 876, 936, 1259, 1348
Hpy8I	GTNNAC	3 cut(s)	926, 1057, 1173
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	4 cut(s)	287, 350, 873, 1232
HpyCH4III	ACNGT	3 cut(s)	532, 1043, 1385
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	6 cut(s)	235, 446, 583, 1046, 1144, 1220
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 443, 494
HpyF3I	CTNAG	8 cut(s)	177, 185, 386, 555, 652, 827, 875, 1347
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	2 cut(s)	127, 920
HspAI	GCGC	3 cut(s)	17, 91, 495
Kpn2I	TCCGGA	1 cut(s)	1282
LguI	GCTCTTC	1 cut(s)	342
LmnI	GCTCC	3 cut(s)	280, 508, 767
Lsp1109I	GCAGC	4 cut(s)	176, 247, 270, 567
LweI	GCATC	5 cut(s)	222, 397, 433, 751, 1324
MaeI	CTAG	4 cut(s)	513, 728, 897, 974
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	4 cut(s)	116, 772, 1274, 1375
MboII	GAAGA	8 cut(s)	141, 329, 374, 830, 1006, 1049, 1114, 1223
MfeI	CAATTG	1 cut(s)	989
MflI	RGATCY	3 cut(s)	685, 931, 996
MluCI	AATT	9 cut(s)	44, 83, 97, 716, 758, 989, 1084, 1104, 1286
MlyI	GAGTC	3 cut(s)	188, 514, 657
MmeI	TCCRAC	1 cut(s)	745
MroI	TCCGGA	1 cut(s)	1282
MseI	TTAA	7 cut(s)	74, 267, 288, 375, 567, 953, 1416
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	2 cut(s)	391, 1283
MunI	CAATTG	1 cut(s)	989
Mva1269I	GAATGC	2 cut(s)	1144, 1313
MvnI	CGCG	3 cut(s)	17, 91, 646
MwoI	GCNNNNNNNGC	3 cut(s)	25, 443, 494
NdeI	CATATG	1 cut(s)	201
NheI	GCTAGC	1 cut(s)	727
NlaIII	CATG	2 cut(s)	127, 920
NlaIV	GGNNCC	1 cut(s)	769
NmeAIII	GCCGAG	1 cut(s)	718
NmuCI	GTSAC	1 cut(s)	772
PaeR7I	CTCGAG	2 cut(s)	489, 575
PciSI	GCTCTTC	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	2 cut(s)	158, 1173
PctI	GAATGC	2 cut(s)	1144, 1313
PfeI	GAWTC	5 cut(s)	129, 217, 224, 538, 1223
PflFI	GACNNNGTC	1 cut(s)	171
PkrI	GCNGC	7 cut(s)	16, 191, 198, 237, 285, 436, 582
PleI	GAGTC	3 cut(s)	187, 514, 656
PpsI	GAGTC	3 cut(s)	187, 514, 656
PsiI	TTATAA	1 cut(s)	474
PspN4I	GGNNCC	1 cut(s)	769
PspXI	VCTCGAGB	2 cut(s)	489, 575
PstNI	CAGNNNCTG	1 cut(s)	689
PsuI	RGATCY	3 cut(s)	685, 931, 996
PsyI	GACNNNGTC	1 cut(s)	171
RsaI	GTAC	3 cut(s)	331, 430, 1166
RsaNI	GTAC	3 cut(s)	330, 429, 1165
RseI	CAYNNNNRTG	1 cut(s)	366
SapI	GCTCTTC	1 cut(s)	342
SaqAI	TTAA	7 cut(s)	74, 267, 288, 375, 567, 953, 1416
SatI	GCNGC	7 cut(s)	15, 190, 197, 236, 284, 435, 581
SchI	GAGTC	3 cut(s)	188, 514, 657
SfaNI	GCATC	5 cut(s)	222, 397, 433, 751, 1324
Sfr274I	CTCGAG	2 cut(s)	489, 575
SlaI	CTCGAG	2 cut(s)	489, 575
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	489, 575
SmoI	CTYRAG	2 cut(s)	489, 575
Sse9I	AATT	9 cut(s)	44, 83, 97, 716, 758, 989, 1084, 1104, 1286
SsiI	CCGC	3 cut(s)	15, 197, 434
SspI	AATATT	4 cut(s)	663, 751, 967, 1341
SspMI	CTAG	4 cut(s)	513, 728, 897, 974
StyI	CCWWGG	1 cut(s)	1424
TaaI	ACNGT	3 cut(s)	532, 1043, 1385
TaiI	ACGT	1 cut(s)	172
TaqII	GACCGA	2 cut(s)	128, 1190
TasI	AATT	9 cut(s)	44, 83, 97, 716, 758, 989, 1084, 1104, 1286
TauI	GCSGC	3 cut(s)	17, 199, 437
TfiI	GAWTC	5 cut(s)	129, 217, 224, 538, 1223
Tru1I	TTAA	7 cut(s)	74, 267, 288, 375, 567, 953, 1416
Tru9I	TTAA	7 cut(s)	74, 267, 288, 375, 567, 953, 1416
TscAI	CASTG	3 cut(s)	950, 1048, 1333
TseFI	GTSAC	1 cut(s)	772
TseI	GCWGC	4 cut(s)	189, 235, 283, 580
Tsp45I	GTSAC	1 cut(s)	772
TspDTI	ATGAA	4 cut(s)	306, 920, 933, 1131
TspRI	CASTG	3 cut(s)	950, 1048, 1333
Tth111I	GACNNNGTC	1 cut(s)	171
XapI	RAATTY	2 cut(s)	97, 1104
XhoI	CTCGAG	2 cut(s)	489, 575
XspI	CTAG	4 cut(s)	513, 728, 897, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.