Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008354

Physical Location & Seq

Genomic Coordinates Reverse (-)

55029259 .. 55056775

Gene Structure 27517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0456300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4419 bp

ATGATGGAGGATTTGTGGGTTCTGTATTGTGGGGAATCTGCTCCTTCCAATTTTGACTTTCTGGGCCATCCTTCTTCATGCACCAATCATTTGTTGATAATTTGCTTGGACATAGTTCTGTTAGTAATGCTCTTGTTCACTATGTTTCATAAGTCATCATCATCCAAATCAGCTCACATTCCAGCCCGGTTTCGAGGCTTTTCCAGTTTGCAAATAGTGTCTGCCATTGTCAATGGCTGTCTTGGATTTGTGTACTTGTGCTTGGGAACCTGGATTTTAGTACAGAAGCTGAGGGATTCAGGATCTGCTTTGCCTTTGAATTGGTGGTTACTTACTTTGTTTCAAGGGATAACATGGCTGTTGGTGAGTTTGAGTCTGAGCATCAGGGGAAAACTACTTGCAAGGCAACCTTCGAGACTGTTGTCTATCCTTGCATTCCTGTTTTCTGGAATTGTCTGTGCTCTATCGCTCTTCGCAGCCATTTTCGGAAAAGAAATATCTGTGAAGATAGTTCTAGATATCCTATCTTTTCCAGGAGCAGCATTGTTGCTGTTATGTGTTTATAAGGGTTATATACATGAAGAGGGTGATGAGAGCCTCAATGGAAATGGCCTTTATACTCCTCTTTATGGTGGGTCCAATGTCACTAGTAAAGGTGAAGATCATGTTACTCCATTTGCCAAAGCTGGATTTTTCAGTAAAATGTCACTTTGGTGGCTGAATTCATTGATGAAAAAGGGTAGGGAGAAAACTCTTGAGGACGAAGATATACCAAAGTTGCGTGAGGAAGATCAAGCAGAAAGCTGTTATCTGCTGTTCTTGGAGCAACTGAGCAAGCAGAAAGAAATTGATCCGTCTTCCCAACCATCAGTGTTGAAGACGATAATCATATGCCACTGGAAGGAGATTTTACTATCTGGCTTCTTTGCTTTACTTAAGATTGTCACTCTCTCTGCAGGTCCTTTGCTTCTCAATGCCTTTATTTTGGTTGCTGAGGGAAATGAAAGTTTCAAATATGAAGGTTACGTGTTAGCCATAACACTTTTCTTTTCAAAGACCATTGAATCTTTATCACAAAGGCAATGGTACTTAAGATGCAGGCTTATTGGTTTGAAAATTAGGTCTTTGCTATCAGCAGCCATTTACAAGAAGCAATTGAGATTATCAAATGCTGCTAAGTTGACACACTCTGGTGGTGAAATCATGAATTATGTTACTGTGGATGCTTATAGGATTGGAGAATTCCCATTTTGGTTCCATCAGACTTGGACAACTAGCCTCCAGCTTTGTTTTGCTTTGGTAATTCTTTTCCGTGCAGTCGGCCTAGCCACATTTGCATCATTGGTAGTGATAGTTTTGACTGTTGTTTGTAATGCTCCACTTGCTAAGTTACAACATAGGTTTCAAAGTAAGCTTATGGTGGCACAAGATGAAAGACTAAAGGCATGTTCAGAAGCTCTTATAAACATGAAGGTACTAAAACTGTATGCATGGGAAACCCATTTCAAGAATGCAATAGAGAAATTGAGGAAGGAGGAGCATAAATGGTTATCTGCTGTACAGCTAAGGAAAGCATACAACACCTATCTCTTTTGGTCATCTCCTGTTTTGGTCTCTGCTGCAACATTTGGGGCATGCTATTTTCTCGGAATTCCATTGCATGCAAACAATGTTTTCACTTTCGTCGCAACTTTGCGCCTTGTTCAGGACCCCATTCGATCTATACCTGAGGTTATTGGGGTTGTCATTCAAGCCAAGGTTGCATTTGAGCGTATTGTGAAGTTCCTTGAGGCACCAGAGCTGCACTCTTCAAATGTCAGGAAGTGCAACATGAAGAATGTAGCACATTCCATTGTTATTAAGTCAGCTAGTTTTTCATGGGATAATTTATCAAAGGCCACACTGAGAAATATAAATTTAGAGGTTAGCCCTGGTCAGAAGGTGGCTATATGTGGAGAAGTTGGCTCAGGAAAATCAAGCCTCCTCGCTGCAATTCTCGGGGAAATTCCAAATGTTGAAGGAACTATTCAAGTTTTTGGGAAGATTGCCTATGTTTCTCAAACAGCATGGATCCAGACAGGGACAATACAGGAGAATATTCTATTTGGTTCTGCTATGGATAGTGAAAGATACCGAGAAACGCTTGAGAGATGTTCACTTGTAAAGGACCTTGAGTTACTGCCCTATGGTGATCTCACTGAAATAGGGGAGAGAGGGGTCAATCTAAGTGGTGGTCAGAAGCAGCGGATTCAACTTGCTCGTGCTCTCTATCAGAATGCTGACATATATCTCTTGGATGATCCATTTAGTGCTGTTGATGCACATACTGCTACTAACCTATTTAATGAATATGTTATGGAAGCACTTTCAGGGAAGACAGTCTTACTTGTGACCCATCAAGTTGATTTCCTGCCTGCATTTGATTCAGTCTTGTTGATGTTGGATGGGGAAATCCTTGAAGCAGCTCCTTATTATCAGTTATTGGCCTCGAGCCAAGAGTTTCAGGACCTTGTCAATGCACACAAAGAAACTGCTGGTTCTGAAAGGCTTGTAGATGTCCCTTCTGTCCAAAATTCTGGAACATCATCCAGAGAGATTAAGAAGGCTTATGTAGAGAAGAAATTGAAAGGAAATAAAGGTGACCAGTTGATTAAGATAGAAGAGAGAGAAATAGGAGACACTGGTTTGAGGCCATATAAACAGTATCTGAGACAGAACAAAGGCGTCTTGTACTTCTCAGCCGCTATTCTTTTACACCTGACATTTGTTATTAGTCAGATAGCACAGAACTCTTGGATGGCTGCTAATGTTGATAATCCCAATGTTAGCTCATTGCAATTGATCGTGGTTTACCTGTCGATTGGATTTTCTGCAACATTTATTTTGCTGTTCAGATCTCTGTTAACAGTTGTTTTGGGTCTTGAGGCATCAAAGTCTTTATTTTCTCAGCTACTAGACTCTCTATTTCGTGCACCCATGTCTTTCTATGACTCAACGCCTCTGGGAAGGATACTAAGTCGGGTTTCATCTGATCTAAGTATCGTAGATCTTGATATTCCATTCAGCCTGGTCTTTGCTTGTGGAGCTACCATAAATGCTTACTCCAATCTTGGAGTACTAGCTGCTGTTACATGGCAAGTCCTGTTTGTTTCCATACCAATGGTCTTTCTGGCAATTCAGCTACAGAAATATTACTTTTCCACTGCCAAGGAGTTGATGAGGATCAATGGAACAACTAAGTCTTTTGTAGCAAACCATCTAGCAGAGTCTGTATCAGGCGCCATTACAATAAGAGCTTTCAATGAAGAAGACCGCTTCTTGGCAAAGAATTTTCACCTCATTGACACAAATGCTAGCCCATTTTTTCATAGTTTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAATAATTTGTGCAGCAGTTCTCGCCTCTGCAGCACTCTGTATGGTTTTGCTTCCAACTGGAACTTTTAGCTCTGGGTTTATTGGAATGGCTCTTTCTTATGGTCTTTCATTAAACATGTCATTGATCTATTCAATTCAAAACCAGTGCACTGTAGCAAATTACATAATTTCTGTTGAAAGACTAAATCAATACACACATGTACCAAGCGAAGCCCCTGAAGTCATAGAGGGAAACCGTCCACCTCCCAACTGGCCTGTTGTAGGAAAAGTGGAAATACAAAATTTGCAGATAAGATATAGGGATGACACACCACTTGTTCTTCGAGGGATCAGTTGTGTTTTTGAAGGAGGACATAAGATTGGTATTGTTGGCCGGACAGGCAGTGGGAAGTCTACACTAATCGGTGCTCTATTTCGTCTGGTGGAGCCAGCCGGAGGGAAGATTATAGTCGATGGCATTGACATCTCTACTATAGGACTTCATGATCTGAGGTCAAGATTTGGAATAATACCTCAAGACCCTACTCTCTTTAATGGCACCGTCAGATACAATTTGGACCCCTTATCTCAACATTCAGACCAGAAAATATGGGAGGTTCTTGGGAAGTGTCAGCTTCGAGAGGTTGTTGAGGAGAAAGAAAAAGGCTTAGACTCGTTAGTTGTGCATGATGGATCAAACTGGAGCATGGGGCAAAGGCAACTGTTCTGCCTCGGGCGCGCTCTTCTAAGGAGAAGTCGGGTATTGGTGCTTGATGAAGCAACTGCATCCATCGACAATGCAACTGATACGATCCTGCAGAAGACTATAAGGACTGAGTTTGAAGCTTGTACAGTAATTACAGTAGCTCACAGGATACCAACTGTGATGGATTGCACAATGGTTCTTGCCATTAGCGATGGAAAGATAATGGAGTATGATGAGCCAATGAGGTTGATGAAGAGAGAAGGCTCGCTGTTTGGGCAGCTTGTCAAGGAGTACTGGTCTCATCTCCAGTCTGCAGAATCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009898 GO:0009987 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045087 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098552 GO:0098562 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Pkinase_Tyr

Protein Analysis

1472

Amino Acids

163.74

Weight (kDa)

7.69

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCC10_N	PF24358	2 - 191	2.4e-77	ABCC10 N-terminal domain
ABC_membrane	PF00664	303 - 568	7.8e-24	ABC transporter transmembrane region
ABC_tran	PF00005	635 - 769	7e-23	ABC transporter
ABC_membrane	PF00664	910 - 1173	2.2e-26	ABC transporter transmembrane region
ABC_tran	PF00005	1243 - 1391	9.6e-25	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31800 AT2G43850 AT2G43850 AT2G43850 AT3G59830
fragaria_vesca	FvH4_1g00360 FvH4_1g00360
malus_domestica	MD02G1002900.v1.1 MD05G1054300.v1.1 MD15G1146100.v1.1
prunus_persica	Prupe.7G268300_v2.0.a1
pyrus_communis	pycom02g00150 pycom15g13120
rosa_chinensis	RchiOBHm_Chr2g0084791
rosa_laevigata	RLG00000015639
rosa_multiflora	Rmu_sc0002352.1_g000001 Rmu_ssc0000436.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155810
rosa_rugosa	Rorug01G0456300
rosa_samantha	Rh2BG005000 Rh2CG005400 Rh2DG004800
rosa_wichuraiana	Rw2G000390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	564, 1463
Acc36I	ACCTGC	1 cut(s)	947
AccB1I	GGYRCC	3 cut(s)	1792, 3278, 3944
AccI	GTMKAC	1 cut(s)	3800
AccII	CGCG	1 cut(s)	4125
AciI	CCGC	3 cut(s)	2245, 2742, 3313
AclWI	GGATC	9 cut(s)	310, 845, 2065, 2078, 2294, 3230, 3743, 4087, 4192
AcoI	YGGCCR	1 cut(s)	3778
AcsI	RAATTY	8 cut(s)	721, 1241, 1650, 1915, 2004, 2572, 3328, 3688
AcuI	CTGAAG	1 cut(s)	3645
AcyI	GRCGYC	2 cut(s)	2724, 3279
AfiI	CCNNNNNNNGG	6 cut(s)	629, 901, 1705, 3319, 3668, 3842
AflII	CTTAAG	2 cut(s)	935, 1090
AflIII	ACRYGT	3 cut(s)	1026, 3522, 3604
AhlI	ACTAGT	1 cut(s)	647
AjnI	CCWGG	4 cut(s)	269, 532, 1930, 3066
AleI	CACNNNNGTG	2 cut(s)	712, 1191
Alw21I	GWGCWC	5 cut(s)	463, 2266, 2974, 3557, 3817
Alw26I	GTCTC	5 cut(s)	409, 1618, 2670, 2704, 4395
Alw44I	GTGCAC	2 cut(s)	2970, 3553
AlwI	GGATC	9 cut(s)	310, 845, 2065, 2078, 2294, 3230, 3743, 4087, 4192
AlwNI	CAGNNNCTG	4 cut(s)	289, 305, 2707, 3269
Ama87I	CYCGRG	3 cut(s)	1997, 2488, 4118
AoxI	GGCC	8 cut(s)	64, 610, 1321, 1896, 2484, 2690, 3659, 3778
ApaLI	GTGCAC	2 cut(s)	2970, 3553
ApoI	RAATTY	8 cut(s)	721, 1241, 1650, 1915, 2004, 2572, 3328, 3688
AspLEI	GCGC	4 cut(s)	1698, 3281, 4125, 4127
AspS9I	GGNCC	7 cut(s)	64, 636, 959, 1708, 2167, 2506, 3964
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	7 cut(s)	376, 599, 668, 1208, 2201, 2651, 3326
AsuNHI	GCTAGC	1 cut(s)	3353
AvaI	CYCGRG	3 cut(s)	1997, 2488, 4118
AvaII	GGWCC	6 cut(s)	636, 959, 1708, 2167, 2506, 3964
AxyI	CCTNAGG	1 cut(s)	1728
BaeGI	GKGCMC	2 cut(s)	2974, 3557
BaeI	ACNNNNGTAYC	2 cut(s)	3591, 3624
BamHI	GGATCC	1 cut(s)	2070
BanI	GGYRCC	3 cut(s)	1792, 3278, 3944
BauI	CACGAG	1 cut(s)	2259
BbsI	GAAGAC	5 cut(s)	849, 884, 2381, 3315, 4214
Bbv12I	GWGCWC	5 cut(s)	463, 2266, 2974, 3557, 3817
BbvCI	CCTCAGC	2 cut(s)	290, 993
BciT130I	CCWGG	4 cut(s)	271, 534, 1932, 3068
BciVI	GTATCC	2 cut(s)	3003, 4254
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	5 cut(s)	409, 1618, 2670, 2704, 4395
BcuI	ACTAGT	1 cut(s)	647
BfaI	CTAG	9 cut(s)	515, 648, 1275, 1325, 1869, 2954, 3119, 3260, 3354
BfmI	CTRYAG	7 cut(s)	954, 3182, 3435, 3558, 3879, 4202, 4404
BfoI	RGCGCY	1 cut(s)	3282
BfrI	CTTAAG	2 cut(s)	935, 1090
BfuAI	ACCTGC	1 cut(s)	947
BfuI	GTATCC	2 cut(s)	3003, 4254
BglI	GCCNNNNNGGC	1 cut(s)	3786
BglII	AGATCT	2 cut(s)	2894, 3046
BmcAI	AGTACT	2 cut(s)	3117, 4385
Bme1390I	CCNGG	5 cut(s)	187, 271, 534, 1932, 3068
Bme18I	GGWCC	6 cut(s)	636, 959, 1708, 2167, 2506, 3964
BmeT110I	CYCGRG	3 cut(s)	1997, 2488, 4118
BmgT120I	GGNCC	7 cut(s)	64, 636, 959, 1708, 2167, 2506, 3964
BmrFI	CCNGG	5 cut(s)	187, 271, 534, 1932, 3068
BmsI	GCATC	7 cut(s)	390, 1085, 1213, 1346, 2308, 2936, 4181
BmtI	GCTAGC	1 cut(s)	3357
BoxI	GACNNNNGTC	1 cut(s)	421
BpiI	GAAGAC	5 cut(s)	849, 884, 2381, 3315, 4214
BplI	GAGNNNNNCTC	2 cut(s)	1790, 1822
BpmI	CTGGAG	3 cut(s)	1265, 4108, 4382
Bpu10I	CCTNAGC	4 cut(s)	290, 993, 1565, 1966
BpuEI	CTTGAG	6 cut(s)	776, 1808, 2165, 2192, 2942, 3906
BpuMI	CCSGG	1 cut(s)	187
BsaAI	YACGTR	1 cut(s)	1027
BsaBI	GATNNNNATC	1 cut(s)	3221
BsaHI	GRCGYC	2 cut(s)	2724, 3279
BsaI	GGTCTC	2 cut(s)	1618, 4395
BsaJI	CCNNGG	4 cut(s)	1755, 1930, 3207, 4117
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 4373, 4403
Bsc4I	CCNNNNNNNGG	6 cut(s)	629, 901, 1705, 3319, 3668, 3842
Bse21I	CCTNAGG	1 cut(s)	1728
Bse3DI	GCAATG	3 cut(s)	1088, 1655, 2831
Bse8I	GATNNNNATC	1 cut(s)	3221
BseBI	CCWGG	4 cut(s)	271, 534, 1932, 3068
BseDI	CCNNGG	4 cut(s)	1755, 1930, 3207, 4117
BseGI	GGATG	9 cut(s)	67, 161, 1228, 2302, 2449, 2585, 2802, 3715, 4172
BseJI	GATNNNNATC	1 cut(s)	3221
BseLI	CCNNNNNNNGG	6 cut(s)	629, 901, 1705, 3319, 3668, 3842
BseMI	GCAATG	3 cut(s)	1088, 1655, 2831
BsePI	GCGCGC	1 cut(s)	4123
BseRI	GAGGAG	4 cut(s)	612, 1550, 1973, 4052
BseSI	GKGCMC	2 cut(s)	2974, 3557
BsgI	GTGCAG	3 cut(s)	1335, 1787, 3438
Bsh1236I	CGCG	1 cut(s)	4125
BshFI	GGCC	8 cut(s)	66, 612, 1323, 1898, 2486, 2692, 3661, 3780
BshNI	GGYRCC	3 cut(s)	1792, 3278, 3944
BsiHKAI	GWGCWC	5 cut(s)	463, 2266, 2974, 3557, 3817
BsiHKCI	CYCGRG	3 cut(s)	1997, 2488, 4118
BsiSI	CCGG	3 cut(s)	187, 3781, 3840
BslFI	GGGAC	2 cut(s)	2095, 2543
BslI	CCNNNNNNNGG	6 cut(s)	629, 901, 1705, 3319, 3668, 3842
BsmAI	GTCTC	5 cut(s)	409, 1618, 2670, 2704, 4395
BsmFI	GGGAC	2 cut(s)	2095, 2543
BsmI	GAATGC	3 cut(s)	434, 1516, 2281
BsnI	GGCC	8 cut(s)	66, 612, 1323, 1898, 2486, 2692, 3661, 3780
Bso31I	GGTCTC	2 cut(s)	1618, 4395
BsoBI	CYCGRG	3 cut(s)	1997, 2488, 4118
Bsp1286I	GDGCHC	5 cut(s)	463, 2266, 2974, 3557, 3817
Bsp1407I	TGTACA	2 cut(s)	1558, 4235
BspACI	CCGC	3 cut(s)	2245, 2742, 3313
BspANI	GGCC	8 cut(s)	66, 612, 1323, 1898, 2486, 2692, 3661, 3780
BspFNI	CGCG	1 cut(s)	4125
BspHI	TCATGA	2 cut(s)	1203, 3889
BspMAI	CTGCAG	4 cut(s)	958, 3439, 4206, 4408
BspMI	ACCTGC	1 cut(s)	947
BspOI	GCTAGC	1 cut(s)	3357
BspPI	GGATC	9 cut(s)	310, 845, 2065, 2078, 2294, 3230, 3743, 4087, 4192
BspQI	GCTCTTC	2 cut(s)	476, 4134
BspT107I	GGYRCC	3 cut(s)	1792, 3278, 3944
BspTI	CTTAAG	2 cut(s)	935, 1090
BspTNI	GGTCTC	2 cut(s)	1618, 4395
BsrDI	GCAATG	3 cut(s)	1088, 1655, 2831
BsrGI	TGTACA	2 cut(s)	1558, 4235
BssECI	CCNNGG	4 cut(s)	1755, 1930, 3207, 4117
BssHII	GCGCGC	1 cut(s)	4123
BssNI	GRCGYC	2 cut(s)	2724, 3279
BssSI	CACGAG	1 cut(s)	2259
BssT1I	CCWWGG	2 cut(s)	1755, 3207
Bst2BI	CACGAG	1 cut(s)	2259
Bst2UI	CCWGG	4 cut(s)	271, 534, 1932, 3068
Bst6I	CTCTTC	6 cut(s)	476, 576, 1813, 2655, 4134, 4340
BstACI	GRCGYC	2 cut(s)	2724, 3279
BstAFI	CTTAAG	2 cut(s)	935, 1090
BstAPI	GCANNNNNTGC	1 cut(s)	2327
BstAUI	TGTACA	2 cut(s)	1558, 4235
BstBAI	YACGTR	1 cut(s)	1027
BstC8I	GCNNGC	9 cut(s)	836, 1100, 1636, 1662, 2415, 3355, 3837, 4125, 4358
BstEII	GGTNACC	1 cut(s)	2639
BstENI	CCTNNNNNAGG	2 cut(s)	1703, 3666
BstF5I	GGATG	9 cut(s)	67, 161, 1228, 2302, 2449, 2585, 2802, 3715, 4172
BstFNI	CGCG	1 cut(s)	4125
BstH2I	RGCGCY	1 cut(s)	3282
BstHHI	GCGC	4 cut(s)	1698, 3281, 4125, 4127
BstMAI	GTCTC	5 cut(s)	409, 1618, 2670, 2704, 4395
BstNI	CCWGG	4 cut(s)	271, 534, 1932, 3068
BstNSI	RCATGY	5 cut(s)	1449, 1638, 1664, 3526, 3608
BstPAI	GACNNNNGTC	1 cut(s)	421
BstPI	GGTNACC	1 cut(s)	2639
BstSCI	CCNGG	5 cut(s)	185, 269, 532, 1930, 3066
BstSFI	CTRYAG	7 cut(s)	954, 3182, 3435, 3558, 3879, 4202, 4404
BstSLI	GKGCMC	2 cut(s)	2974, 3557
BstUI	CGCG	1 cut(s)	4125
BstV2I	GAAGAC	5 cut(s)	849, 884, 2381, 3315, 4214
BstX2I	RGATCY	4 cut(s)	302, 2070, 2894, 3046
BstXI	CCANNNNNNTGG	2 cut(s)	2576, 3160
BstYI	RGATCY	4 cut(s)	302, 2070, 2894, 3046
Bsu36I	CCTNAGG	1 cut(s)	1728
BsuI	GTATCC	2 cut(s)	3003, 4254
BsuRI	GGCC	8 cut(s)	66, 612, 1323, 1898, 2486, 2692, 3661, 3780
BtgZI	GCGATG	1 cut(s)	4317
BtsCI	GGATG	9 cut(s)	67, 161, 1228, 2302, 2449, 2585, 2802, 3715, 4172
BtsI	GCAGTG	2 cut(s)	3201, 3796
BtsIMutI	CAGTG	9 cut(s)	876, 895, 1901, 2196, 2679, 3201, 3555, 3557, 3796
BveI	ACCTGC	1 cut(s)	947
Cac8I	GCNNGC	9 cut(s)	836, 1100, 1636, 1662, 2415, 3355, 3837, 4125, 4358
CaiI	CAGNNNCTG	4 cut(s)	289, 305, 2707, 3269
CciI	TCATGA	2 cut(s)	1203, 3889
CfoI	GCGC	4 cut(s)	1698, 3281, 4125, 4127
Cfr13I	GGNCC	7 cut(s)	64, 636, 959, 1708, 2167, 2506, 3964
CseI	GACGC	1 cut(s)	2713
CspCI	CAANNNNNGTGG	2 cut(s)	2209, 2244
DinI	GGCGCC	1 cut(s)	3280
EaeI	YGGCCR	1 cut(s)	3778
Eam1104I	CTCTTC	6 cut(s)	476, 576, 1813, 2655, 4134, 4340
EarI	CTCTTC	6 cut(s)	476, 576, 1813, 2655, 4134, 4340
Eco130I	CCWWGG	2 cut(s)	1755, 3207
Eco31I	GGTCTC	2 cut(s)	1618, 4395
Eco32I	GATATC	1 cut(s)	520
Eco47I	GGWCC	6 cut(s)	636, 959, 1708, 2167, 2506, 3964
Eco57I	CTGAAG	1 cut(s)	3645
Eco81I	CCTNAGG	1 cut(s)	1728
Eco88I	CYCGRG	3 cut(s)	1997, 2488, 4118
Eco91I	GGTNACC	1 cut(s)	2639
EcoNI	CCTNNNNNAGG	2 cut(s)	1703, 3666
EcoO109I	RGGNCCY	4 cut(s)	959, 1708, 2167, 2506
EcoO65I	GGTNACC	1 cut(s)	2639
EcoRI	GAATTC	3 cut(s)	721, 1241, 1650
EcoRII	CCWGG	4 cut(s)	269, 532, 1930, 3066
EcoRV	GATATC	1 cut(s)	520
EcoT14I	CCWWGG	2 cut(s)	1755, 3207
EcoT22I	ATGCAT	1 cut(s)	1492
EgeI	GGCGCC	1 cut(s)	3280
EheI	GGCGCC	1 cut(s)	3280
ErhI	CCWWGG	2 cut(s)	1755, 3207
FalI	AAGNNNNNCTT	4 cut(s)	394, 426, 2366, 2398
FaqI	GGGAC	2 cut(s)	2095, 2543
FauNDI	CATATG	1 cut(s)	890
FblI	GTMKAC	1 cut(s)	3800
FokI	GGATG	9 cut(s)	54, 148, 1235, 2309, 2456, 2572, 2809, 3722, 4159
FspBI	CTAG	9 cut(s)	515, 648, 1275, 1325, 1869, 2954, 3119, 3260, 3354
GlaI	GCGC	4 cut(s)	1697, 3280, 4124, 4126
GsuI	CTGGAG	3 cut(s)	1265, 4108, 4382
HaeII	RGCGCY	1 cut(s)	3282
HaeIII	GGCC	8 cut(s)	66, 612, 1323, 1898, 2486, 2692, 3661, 3780
HapII	CCGG	3 cut(s)	187, 3781, 3840
HgaI	GACGC	1 cut(s)	2713
HhaI	GCGC	4 cut(s)	1698, 3281, 4125, 4127
Hin1I	GRCGYC	2 cut(s)	2724, 3279
Hin6I	GCGC	4 cut(s)	1696, 3279, 4123, 4125
HinP1I	GCGC	4 cut(s)	1696, 3279, 4123, 4125
HincII	GTYRAC	2 cut(s)	1182, 2904
HindII	GTYRAC	2 cut(s)	1182, 2904
HindIII	AAGCTT	2 cut(s)	1412, 4230
HpaI	GTTAAC	1 cut(s)	2904
HpaII	CCGG	3 cut(s)	187, 3781, 3840
HphI	GGTGA	7 cut(s)	376, 599, 668, 1208, 2201, 2651, 3326
Hpy99I	CGWCG	1 cut(s)	1688
HpyCH4IV	ACGT	1 cut(s)	1026
HpySE526I	ACGT	1 cut(s)	1026
Hsp92I	GRCGYC	2 cut(s)	2724, 3279
HspAI	GCGC	4 cut(s)	1696, 3279, 4123, 4125
KasI	GGCGCC	1 cut(s)	3278
KspAI	GTTAAC	1 cut(s)	2904
LguI	GCTCTTC	2 cut(s)	476, 4134
LmnI	GCTCC	9 cut(s)	46, 536, 823, 1381, 1537, 2470, 3083, 3832, 4089
LweI	GCATC	7 cut(s)	390, 1085, 1213, 1346, 2308, 2936, 4181
MaeI	CTAG	9 cut(s)	515, 648, 1275, 1325, 1869, 2954, 3119, 3260, 3354
MaeII	ACGT	1 cut(s)	1026
MfeI	CAATTG	2 cut(s)	1154, 2837
MflI	RGATCY	4 cut(s)	302, 2070, 2894, 3046
MhlI	GDGCHC	5 cut(s)	463, 2266, 2974, 3557, 3817
Mly113I	GGCGCC	1 cut(s)	3279
MlyI	GAGTC	5 cut(s)	382, 2951, 2984, 3275, 4052
MmeI	TCCRAC	2 cut(s)	2421, 3485
Mph1103I	ATGCAT	1 cut(s)	1492
MseI	TTAA	9 cut(s)	936, 1091, 1860, 2343, 2598, 2652, 2903, 3518, 3939
MslI	CAYNNNNRTG	3 cut(s)	712, 1191, 3158
MspA1I	CMGCKG	1 cut(s)	2245
MspCI	CTTAAG	2 cut(s)	935, 1090
MspI	CCGG	3 cut(s)	187, 3781, 3840
MspR9I	CCNGG	5 cut(s)	187, 271, 534, 1932, 3068
MunI	CAATTG	2 cut(s)	1154, 2837
Mva1269I	GAATGC	3 cut(s)	434, 1516, 2281
MvaI	CCWGG	4 cut(s)	271, 534, 1932, 3068
MvnI	CGCG	1 cut(s)	4125
NarI	GGCGCC	1 cut(s)	3279
NciI	CCSGG	1 cut(s)	187
NdeI	CATATG	1 cut(s)	890
NheI	GCTAGC	1 cut(s)	3353
NmuCI	GTSAC	5 cut(s)	643, 705, 943, 2389, 2639
NsiI	ATGCAT	1 cut(s)	1492
NspI	RCATGY	5 cut(s)	1449, 1638, 1664, 3526, 3608
OliI	CACNNNNGTG	2 cut(s)	712, 1191
PaeI	GCATGC	2 cut(s)	1638, 1664
PaeR7I	CTCGAG	1 cut(s)	2488
PagI	TCATGA	2 cut(s)	1203, 3889
PauI	GCGCGC	1 cut(s)	4123
PciI	ACATGT	2 cut(s)	3522, 3604
PciSI	GCTCTTC	2 cut(s)	476, 4134
PctI	GAATGC	3 cut(s)	434, 1516, 2281
PfeI	GAWTC	7 cut(s)	35, 296, 1064, 2248, 2423, 3394, 4409
PflFI	GACNNNGTC	1 cut(s)	2510
PfoI	TCCNGGA	1 cut(s)	532
PleI	GAGTC	5 cut(s)	381, 2951, 2984, 3274, 4052
PluTI	GGCGCC	1 cut(s)	3282
PpsI	GAGTC	5 cut(s)	381, 2951, 2984, 3274, 4052
Ppu21I	YACGTR	1 cut(s)	1027
PpuMI	RGGWCCY	4 cut(s)	959, 1708, 2167, 2506
PscI	ACATGT	2 cut(s)	3522, 3604
PshAI	GACNNNNGTC	1 cut(s)	421
PsiI	TTATAA	2 cut(s)	564, 1463
Psp5II	RGGWCCY	4 cut(s)	959, 1708, 2167, 2506
Psp6I	CCWGG	4 cut(s)	269, 532, 1930, 3066
PspEI	GGTNACC	1 cut(s)	2639
PspGI	CCWGG	4 cut(s)	269, 532, 1930, 3066
PspPI	GGNCC	7 cut(s)	64, 636, 959, 1708, 2167, 2506, 3964
PspPPI	RGGWCCY	4 cut(s)	959, 1708, 2167, 2506
PspXI	VCTCGAGB	1 cut(s)	2488
PstI	CTGCAG	4 cut(s)	958, 3439, 4206, 4408
PstNI	CAGNNNCTG	4 cut(s)	289, 305, 2707, 3269
PsuI	RGATCY	4 cut(s)	302, 2070, 2894, 3046
PsyI	GACNNNGTC	1 cut(s)	2510
PteI	GCGCGC	1 cut(s)	4123
RseI	CAYNNNNRTG	3 cut(s)	712, 1191, 3158
SapI	GCTCTTC	2 cut(s)	476, 4134
SaqAI	TTAA	9 cut(s)	936, 1091, 1860, 2343, 2598, 2652, 2903, 3518, 3939
Sau96I	GGNCC	7 cut(s)	64, 636, 959, 1708, 2167, 2506, 3964
ScaI	AGTACT	2 cut(s)	3117, 4385
SchI	GAGTC	5 cut(s)	382, 2951, 2984, 3275, 4052
ScrFI	CCNGG	5 cut(s)	187, 271, 534, 1932, 3068
SduI	GDGCHC	5 cut(s)	463, 2266, 2974, 3557, 3817
SfaNI	GCATC	7 cut(s)	390, 1085, 1213, 1346, 2308, 2936, 4181
SfcI	CTRYAG	7 cut(s)	954, 3182, 3435, 3558, 3879, 4202, 4404
SfoI	GGCGCC	1 cut(s)	3280
Sfr274I	CTCGAG	1 cut(s)	2488
SinI	GGWCC	6 cut(s)	636, 959, 1708, 2167, 2506, 3964
SlaI	CTCGAG	1 cut(s)	2488
SmiMI	CAYNNNNRTG	3 cut(s)	712, 1191, 3158
SmlI	CTYRAG	9 cut(s)	755, 935, 1090, 1787, 2144, 2171, 2488, 2921, 3921
SmoI	CTYRAG	9 cut(s)	755, 935, 1090, 1787, 2144, 2171, 2488, 2921, 3921
SpeI	ACTAGT	1 cut(s)	647
SphI	GCATGC	2 cut(s)	1638, 1664
SsiI	CCGC	3 cut(s)	2245, 2742, 3313
SspDI	GGCGCC	1 cut(s)	3278
SspI	AATATT	2 cut(s)	2098, 3191
SspMI	CTAG	9 cut(s)	515, 648, 1275, 1325, 1869, 2954, 3119, 3260, 3354
StyD4I	CCNGG	5 cut(s)	185, 269, 532, 1930, 3066
StyI	CCWWGG	2 cut(s)	1755, 3207
TaiI	ACGT	1 cut(s)	1029
TaqI	TCGA	9 cut(s)	193, 413, 1717, 2489, 2858, 3730, 3858, 4024, 4179
TatI	WGTACW	7 cut(s)	252, 280, 1558, 2730, 3115, 4235, 4383
TauI	GCSGC	1 cut(s)	2744
TfiI	GAWTC	7 cut(s)	35, 296, 1064, 2248, 2423, 3394, 4409
Tru1I	TTAA	9 cut(s)	936, 1091, 1860, 2343, 2598, 2652, 2903, 3518, 3939
Tru9I	TTAA	9 cut(s)	936, 1091, 1860, 2343, 2598, 2652, 2903, 3518, 3939
TscAI	CASTG	9 cut(s)	876, 902, 1908, 2203, 2686, 3208, 3557, 3562, 3796
TseFI	GTSAC	5 cut(s)	643, 705, 943, 2389, 2639
Tsp45I	GTSAC	5 cut(s)	643, 705, 943, 2389, 2639
TspGWI	ACGGA	2 cut(s)	843, 1301
TspRI	CASTG	9 cut(s)	876, 902, 1908, 2203, 2686, 3208, 3557, 3562, 3796
Tth111I	GACNNNGTC	1 cut(s)	2510
Vha464I	CTTAAG	2 cut(s)	935, 1090
VneI	GTGCAC	2 cut(s)	2970, 3553
VpaK11BI	GGWCC	6 cut(s)	636, 959, 1708, 2167, 2506, 3964
XagI	CCTNNNNNAGG	2 cut(s)	1703, 3666
XapI	RAATTY	8 cut(s)	721, 1241, 1650, 1915, 2004, 2572, 3328, 3688
XbaI	TCTAGA	1 cut(s)	514
XceI	RCATGY	5 cut(s)	1449, 1638, 1664, 3526, 3608
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3654
XhoI	CTCGAG	1 cut(s)	2488
XmiI	GTMKAC	1 cut(s)	3800
XspI	CTAG	9 cut(s)	515, 648, 1275, 1325, 1869, 2954, 3119, 3260, 3354
ZrmI	AGTACT	2 cut(s)	3117, 4385
Zsp2I	ATGCAT	1 cut(s)	1492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.