Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008354

Physical Location & Seq

Genomic Coordinates Forward (+)

9133827 .. 9135596

Gene Structure 1770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1054300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCACAAGTTGATAAATATTTTGCTCGATAATGGAGGTCAACTGAAAGTAGCTGGATTTGGCTTGTTAAGATTGTCAAAAATCTCACCTGACAAAGCAAAACTAGCACGGCCTTGGGCTGACACTGACCTTTCAAGAAATTTTCTCTTCGACTCTATAGGAGCGCAAGTTCTTAATTTCTGGGAAAATCTAGAAGAATCCTTTTTGAATCATTTAATTAGACAAAAGCTGATCAATCTACACAAGTACTACATGCGTATTAGTAATTATAATTTGTCCTCTTTCATTCTATGTTTATATGTGGCACCTGAGATCTACAAAGATGAAATTTTCACCAGAAGTGTGGATGCATACTCTTTCGGTCTTATATTATATGAGATGGTTGAGGGATTACAACCATTCGATCCCAAGCCTATGGAAGAGGCTGCGAAACTGATGTGTTTGGAAGGAAAAAGACCGCAGCTGAGGACCAAATCAAAAAGTTATCCCCCTGTAGTAAAAGAGTTGATTGAGGAATGTTGGAATCCAGAACCTGTTATGAGGCCAATTTTCTCGGAAATTATTGTACGGTTGGACAAGATAGTTTCAAATTGCTCAAAGCAAAGCAGGGATGGTGGAAAGACATGTTTAAGCTGCCTTGGTACGTCTATCATCTGTTTATCTTCTAAAGGAAGAAGAGGAGGCAGTCTTAGTTCCTTTGGAAAACGAATAGAGAAAAGGGCTTGGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009898 GO:0009987 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045087 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098552 GO:0098562 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Pkinase_Tyr

Protein Analysis

244

Amino Acids

27.72

Weight (kDa)

9.19

Isoelectric Point (pI)

61.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	98 - 191	3.4e-14	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	99 - 187	7.8e-10	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31800 AT2G43850 AT2G43850 AT2G43850 AT3G59830
fragaria_vesca	FvH4_1g00360 FvH4_1g00360
malus_domestica	MD02G1002900.v1.1 MD05G1054300.v1.1 MD15G1146100.v1.1
prunus_persica	Prupe.7G268300_v2.0.a1
pyrus_communis	pycom02g00150 pycom15g13120
rosa_chinensis	RchiOBHm_Chr2g0084791
rosa_laevigata	RLG00000015639
rosa_multiflora	Rmu_sc0002352.1_g000001 Rmu_ssc0000436.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155810
rosa_rugosa	Rorug01G0456300
rosa_samantha	Rh2BG005000 Rh2CG005400 Rh2DG004800
rosa_wichuraiana	Rw2G000390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	304
AciI	CCGC	1 cut(s)	458
AclWI	GGATC	1 cut(s)	398
AcsI	RAATTY	2 cut(s)	139, 327
AfaI	GTAC	3 cut(s)	248, 567, 643
AflIII	ACRYGT	1 cut(s)	623
AgsI	TTSAA	3 cut(s)	135, 208, 588
AloI	GAACNNNNNNTCC	2 cut(s)	153, 185
AluBI	AGCT	4 cut(s)	53, 229, 463, 633
AluI	AGCT	4 cut(s)	53, 229, 463, 633
AlwI	GGATC	1 cut(s)	398
AlwNI	CAGNNNCTG	1 cut(s)	533
AoxI	GGCC	2 cut(s)	110, 542
ApeKI	GCWGC	3 cut(s)	425, 460, 633
ApoI	RAATTY	2 cut(s)	139, 327
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	468
AsuHPI	GGTGA	2 cut(s)	78, 325
AvaII	GGWCC	1 cut(s)	468
BanI	GGYRCC	1 cut(s)	304
BbvCI	CCTCAGC	1 cut(s)	464
BbvI	GCAGC	3 cut(s)	412, 472, 620
BccI	CCATC	2 cut(s)	373, 605
BceAI	ACGGC	1 cut(s)	125
BclI	TGATCA	1 cut(s)	231
BfaI	CTAG	2 cut(s)	104, 191
BfmI	CTRYAG	2 cut(s)	156, 492
BglII	AGATCT	1 cut(s)	312
BisI	GCNGC	3 cut(s)	426, 461, 634
BlsI	GCNGC	3 cut(s)	427, 462, 635
BmcAI	AGTACT	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	468
BmgT120I	GGNCC	1 cut(s)	468
BmiI	GGNNCC	1 cut(s)	306
BmsI	GCATC	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	113, 637
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
BseDI	CCNNGG	2 cut(s)	113, 637
BseGI	GGATG	2 cut(s)	352, 616
BseMII	CTCAG	2 cut(s)	300, 455
BseRI	GAGGAG	1 cut(s)	693
BseXI	GCAGC	3 cut(s)	412, 472, 620
BshFI	GGCC	2 cut(s)	112, 544
BshNI	GGYRCC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	112, 544
Bsp143I	GATC	3 cut(s)	231, 312, 403
BspACI	CCGC	1 cut(s)	458
BspANI	GGCC	2 cut(s)	112, 544
BspCNI	CTCAG	2 cut(s)	301, 456
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	398
BspT107I	GGYRCC	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	113, 637
BssMI	GATC	3 cut(s)	231, 312, 403
BssT1I	CCWWGG	2 cut(s)	113, 637
Bst4CI	ACNGT	1 cut(s)	570
Bst6I	CTCTTC	3 cut(s)	152, 414, 670
BstDEI	CTNAG	3 cut(s)	309, 464, 689
BstF5I	GGATG	2 cut(s)	352, 616
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	3 cut(s)	234, 315, 406
BstMBI	GATC	3 cut(s)	231, 312, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNSI	RCATGY	2 cut(s)	256, 627
BstSFI	CTRYAG	2 cut(s)	156, 492
BstV1I	GCAGC	3 cut(s)	412, 472, 620
BstX2I	RGATCY	1 cut(s)	312
BstXI	CCANNNNNNTGG	2 cut(s)	343, 415
BstYI	RGATCY	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	112, 544
BtsCI	GGATG	2 cut(s)	352, 616
BtsIMutI	CAGTG	1 cut(s)	123
CaiI	CAGNNNCTG	1 cut(s)	533
CfoI	GCGC	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	468
Csp6I	GTAC	3 cut(s)	247, 566, 642
CviAII	CATG	2 cut(s)	253, 624
CviQI	GTAC	3 cut(s)	247, 566, 642
DdeI	CTNAG	3 cut(s)	309, 464, 689
DpnI	GATC	3 cut(s)	233, 314, 405
DpnII	GATC	3 cut(s)	231, 312, 403
Eam1104I	CTCTTC	3 cut(s)	152, 414, 670
EarI	CTCTTC	3 cut(s)	152, 414, 670
Eco130I	CCWWGG	2 cut(s)	113, 637
Eco47I	GGWCC	1 cut(s)	468
EcoT14I	CCWWGG	2 cut(s)	113, 637
EcoT22I	ATGCAT	1 cut(s)	352
ErhI	CCWWGG	2 cut(s)	113, 637
FaeI	CATG	2 cut(s)	256, 627
FatI	CATG	2 cut(s)	252, 623
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	426, 461, 634
FokI	GGATG	2 cut(s)	359, 623
Fsp4HI	GCNGC	3 cut(s)	426, 461, 634
FspBI	CTAG	2 cut(s)	104, 191
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	3 cut(s)	426, 461, 634
HaeIII	GGCC	2 cut(s)	112, 544
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	2 cut(s)	256, 627
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	41
HindII	GTYRAC	1 cut(s)	41
HinfI	GANTC	4 cut(s)	152, 197, 208, 523
HphI	GGTGA	2 cut(s)	78, 325
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	556
Hpy188III	TCNNGA	3 cut(s)	135, 191, 527
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	1 cut(s)	570
HpyCH4IV	ACGT	1 cut(s)	644
HpyCH4V	TGCA	2 cut(s)	4, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	3 cut(s)	309, 464, 689
HpySE526I	ACGT	1 cut(s)	644
Hsp92II	CATG	2 cut(s)	256, 627
HspAI	GCGC	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	231, 312, 403
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	9 cut(s)	39, 102, 166, 321, 349, 504, 540, 546, 592
Lsp1109I	GCAGC	3 cut(s)	412, 472, 620
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	2 cut(s)	104, 191
MaeII	ACGT	1 cut(s)	644
MalI	GATC	3 cut(s)	233, 314, 405
MboI	GATC	3 cut(s)	231, 312, 403
MboII	GAAGA	6 cut(s)	139, 206, 431, 654, 684, 687
MflI	RGATCY	1 cut(s)	312
MluCI	AATT	9 cut(s)	139, 175, 216, 265, 271, 327, 546, 558, 589
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	500, 552
MnlI	CCTC	9 cut(s)	29, 289, 379, 415, 459, 505, 534, 671, 674
Mph1103I	ATGCAT	1 cut(s)	352
MseI	TTAA	4 cut(s)	68, 174, 215, 629
MspA1I	CMGCKG	1 cut(s)	463
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	3 cut(s)	231, 312, 403
NlaIII	CATG	2 cut(s)	256, 627
NlaIV	GGNNCC	1 cut(s)	306
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	2 cut(s)	256, 627
PciI	ACATGT	1 cut(s)	623
PfeI	GAWTC	3 cut(s)	197, 208, 523
PkrI	GCNGC	3 cut(s)	427, 462, 635
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PscI	ACATGT	1 cut(s)	623
PsiI	TTATAA	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	468
PstNI	CAGNNNCTG	1 cut(s)	533
PsuI	RGATCY	1 cut(s)	312
PvuII	CAGCTG	1 cut(s)	463
RsaI	GTAC	3 cut(s)	248, 567, 643
RsaNI	GTAC	3 cut(s)	247, 566, 642
SaqAI	TTAA	4 cut(s)	68, 174, 215, 629
SatI	GCNGC	3 cut(s)	426, 461, 634
Sau3AI	GATC	3 cut(s)	231, 312, 403
Sau96I	GGNCC	1 cut(s)	468
ScaI	AGTACT	1 cut(s)	248
SchI	GAGTC	1 cut(s)	146
SfaNI	GCATC	1 cut(s)	337
SfcI	CTRYAG	2 cut(s)	156, 492
SinI	GGWCC	1 cut(s)	468
Sse9I	AATT	9 cut(s)	139, 175, 216, 265, 271, 327, 546, 558, 589
SsiI	CCGC	1 cut(s)	458
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	2 cut(s)	104, 191
StyI	CCWWGG	2 cut(s)	113, 637
TaaI	ACNGT	1 cut(s)	570
TaiI	ACGT	1 cut(s)	647
TaqI	TCGA	3 cut(s)	27, 150, 402
TaqII	GACCGA	1 cut(s)	350
TasI	AATT	9 cut(s)	139, 175, 216, 265, 271, 327, 546, 558, 589
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	3 cut(s)	197, 208, 523
Tru1I	TTAA	4 cut(s)	68, 174, 215, 629
Tru9I	TTAA	4 cut(s)	68, 174, 215, 629
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	3 cut(s)	425, 460, 633
TspDTI	ATGAA	2 cut(s)	274, 339
TspRI	CASTG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	468
XapI	RAATTY	2 cut(s)	139, 327
XbaI	TCTAGA	1 cut(s)	190
XceI	RCATGY	2 cut(s)	256, 627
XspI	CTAG	2 cut(s)	104, 191
ZrmI	AGTACT	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.