Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000436.1

Orthogroup ID

OG0008354

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1425

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000436.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 332 bp

agacttacaaagatgaaatttttgacagaagtgtggatgcatattctttcggactcatattatatgagatgattgagggtgtacagccattccatcccaagcctattgaagaggctgtcaaaatgatgtgtttagaagggaaaagaccaccgatgagaacgaagtcaaaaagttatcctgctgtactaaaagagttgattgaggaatgttgggatccagagcctcgttgtaggccaacattctctgagattattatacggttggataagatagttgcaaactgcacaaagcagggatggtggaaagatacttttaagcttccttggaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009898 GO:0009987 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045087 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098552 GO:0098562 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Pkinase_Tyr

Protein Analysis

109

Amino Acids

12.91

Weight (kDa)

7.55

Isoelectric Point (pI)

65.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31800 AT2G43850 AT2G43850 AT2G43850 AT3G59830
fragaria_vesca	FvH4_1g00360 FvH4_1g00360
malus_domestica	MD02G1002900.v1.1 MD05G1054300.v1.1 MD15G1146100.v1.1
prunus_persica	Prupe.7G268300_v2.0.a1
pyrus_communis	pycom02g00150 pycom15g13120
rosa_chinensis	RchiOBHm_Chr2g0084791
rosa_laevigata	RLG00000015639
rosa_multiflora	Rmu_sc0002352.1_g000001 Rmu_ssc0000436.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155810
rosa_rugosa	Rorug01G0456300
rosa_samantha	Rh2BG005000 Rh2CG005400 Rh2DG004800
rosa_wichuraiana	Rw2G000390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	208, 221
AcsI	RAATTY	1 cut(s)	17
AfaI	GTAC	2 cut(s)	83, 185
AgsI	TTSAA	1 cut(s)	109
AluBI	AGCT	1 cut(s)	318
AluI	AGCT	1 cut(s)	318
AlwI	GGATC	2 cut(s)	208, 221
AoxI	GGCC	1 cut(s)	232
ApoI	RAATTY	1 cut(s)	17
BamHI	GGATCC	1 cut(s)	213
BccI	CCATC	2 cut(s)	101, 290
BmiI	GGNNCC	1 cut(s)	215
BmsI	GCATC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	322
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	3 cut(s)	42, 93, 301
BseMII	CTCAG	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	267
BshFI	GGCC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	234
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	213
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	215
BspPI	GGATC	2 cut(s)	208, 221
BsrGI	TGTACA	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	322
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	104
BstAUI	TGTACA	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	245
BstF5I	GGATG	3 cut(s)	42, 93, 301
BstKTI	GATC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	3 cut(s)	42, 93, 301
Csp6I	GTAC	2 cut(s)	82, 184
CviJI	RGCY	6 cut(s)	87, 102, 115, 222, 234, 318
CviKI_1	RGCY	6 cut(s)	87, 102, 115, 222, 234, 318
CviQI	GTAC	2 cut(s)	82, 184
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	322
EcoT22I	ATGCAT	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	322
FaiI	YATR	5 cut(s)	42, 58, 63, 65, 256
FokI	GGATG	3 cut(s)	49, 80, 308
HaeIII	GGCC	1 cut(s)	234
HindIII	AAGCTT	1 cut(s)	316
HinfI	GANTC	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	52, 246
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	3 cut(s)	40, 277, 284
HpyF3I	CTNAG	1 cut(s)	245
Kzo9I	GATC	1 cut(s)	213
LpnPI	CCDG	3 cut(s)	191, 230, 277
LweI	GCATC	1 cut(s)	27
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	1 cut(s)	121
MflI	RGATCY	1 cut(s)	213
MluCI	AATT	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	4 cut(s)	69, 105, 195, 233
Mph1103I	ATGCAT	1 cut(s)	42
MseI	TTAA	1 cut(s)	314
NdeII	GATC	1 cut(s)	213
NlaIV	GGNNCC	1 cut(s)	215
NsiI	ATGCAT	1 cut(s)	42
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	213
RsaI	GTAC	2 cut(s)	83, 185
RsaNI	GTAC	2 cut(s)	82, 184
SaqAI	TTAA	1 cut(s)	314
Sau3AI	GATC	1 cut(s)	213
SchI	GAGTC	1 cut(s)	47
SetI	ASST	1 cut(s)	320
SfaNI	GCATC	1 cut(s)	27
SgeI	CNNG	5 cut(s)	111, 190, 229, 236, 304
Sse9I	AATT	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	260
TasI	AATT	1 cut(s)	17
TatI	WGTACW	2 cut(s)	81, 183
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TspDTI	ATGAA	1 cut(s)	29
XapI	RAATTY	1 cut(s)	17
Zsp2I	ATGCAT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.