Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008354

Physical Location & Seq

Genomic Coordinates Reverse (-)

92311408 .. 92321315

Gene Structure 9908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00155810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1893 bp

ATGGAGAACATCGCGGCGCAGCTTAAGCGAGGCATTTCCCGGCAGTTCTCTACCGGCTCGCTCCGGCGGAACCTCAGCCGGCAGTTCAGCCGGCAATCCTCGCTTGACCCCAGGCGGAACAACCTCCGCTTCAGCTTCGGCCGCCAGTCCTCGCTCGACCCGATTCGGCGCAGCCCCAGCGAAGACGACTCCGAGCTGTCCGTGCCGGAGAATCTCGACTCCACCATGCACTTGCTCTTCCTGGCCTGCCGAGGCGACGTCCATGGCGTCGAAGACCTTCTCAATCAAGGCATTGACGTCAACAGCATCGACTTGGATGGCCGCACCGCGCTGCACATCGCCGCCTGCGAGGGTCACATCGACGTTTGCAGGCTCTTGCTCAGCCGCAAGGCCAACATCGATGCTCGCGATCGCTGGGGCAGTACGGCAGCTGCTGATGCCAAGTATTATGGGAATACGGATGTGTACAACATTTTGAAGGCACGGGGAGCCAAAGTTCCGAAAACCAGGAAGACCCCGATGACTGTTGCAAATCCTCGAGAAGTTCCAGAGTATGAGCTCAATCCATTGGAGCTTCAAGTTCGAAAGAGTGATGGCATCACAAAGGGAACGTATCAAGTGGCTAAATGGAATGGTACAAAGGTTTCTGTAAAGATAGTAGACAAGGAAAGCTATTCAGACCCTGAATGCATAAATGCTTTCAACAATGAATTGACGTTGCTAGAGAAGGTTCGGCATCCAAACGTCGTTCAGTTTGTTGGTGCTGTTACCCAGAATATACCCATGATGATTGTTGTAGAATATCATGCGAAAGGTGACTTAGGAAGCTATCTTCAAAAGAAAGGACGATTATCTCCATCAAAAGCACTGAGATTTGCTCTTGACATTGCAAGGCATGTGCAATTTATTTTCCAGCCATTACTTCTGAAGGGCATGAATTATCTTCACGAATGTGCCAGAAATATTTTGCTCGATAATGGAGGTCACTTGAAGATATCTGGATTCGGGTTGATAAGGTTGTCATATATTTCTCCTGACAAAGCAAAACTGGCACAGCCTTGGGCACACAATCATTCAAGTCTCTATGTGGCACCTGAGACTTACAAAGATGAAATTTTTGACAGAAGTGTGGATGCATATTCTTTCGGACTCATATTATATGAGATGATTGAGGGTGTACAGCCATTCCATCCCAAGCCTATTGAAGAGGCTGTCAAAATGATGTGTTTAGAAGGGAAAAGACCACCGATGAGAACGAAGTCAAAAAGTTATCCTGCTGTACTAAAAGAGTTGATTGAGGAATGTTGGGATCCAGAACCTCGTTGTAGGCCAACATTCTCTGAGATTATTATACGGTTGGATAAGATAGTTGCAAACTGCACAAAGCAGGGATGGTGGAAAGATACTTTTAAGCTTCCTTGTGGATCTTCGTATAATTGTGAAAAGACGATTCAAAAGGAGATGCGTGAGGATTCGACCGTTGGATCGTCGTATAATTTTGTGAGGATGATTCTAAAGGCGATGCGGGACGATCCAACCGTGATTCGTGAGGATGCGACCGTTGGATTGTGGTATAATTTTGAGAGGATGAACCTAAGGGCGATCCGTGAGGATACGACCGTTGGATCATCGTATAAATCGGTCATCGATGTTTTGCATCCAGGAAGACCAAACGTCTCCAAGGCGGAGTTGAAGGAGAAACTGGCAAGGATGTACGAAGTGAAGGATACAAATGCCATCTTTGTTTTCAAGTTCCGCACCCATTTTGGAGGGAATGGACTGGACAAAAAGGTGGATAAGTCAAGGAAGCAACTCAAGGAAAGGAAGAACAGAGCTAAGAAGATCCGTGGAGTAAAGAAGACCAAGGCTGGTGATGCTGCCAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009898 GO:0009987 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045087 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098552 GO:0098562 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Pkinase_Tyr

Protein Analysis

630

Amino Acids

71.61

Weight (kDa)

9.51

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	80 - 167	5.1e-13	Ankyrin repeats (3 copies)
Ank_4	PF13637	84 - 127	7e-07	Ankyrin repeats (many copies)
Ank_5	PF13857	93 - 143	4.5e-06	Ankyrin repeats (many copies)
Ank	PF00023	106 - 138	3.5e-10	Ankyrin repeat
PK_Tyr_Ser-Thr	PF07714	200 - 452	2.7e-43	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	207 - 450	5.6e-32	Protein kinase domain
Ribosomal_S24e	PF01282	548 - 592	1.5e-11	Ribosomal protein S24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31800 AT2G43850 AT2G43850 AT2G43850 AT3G59830
fragaria_vesca	FvH4_1g00360 FvH4_1g00360
malus_domestica	MD02G1002900.v1.1 MD05G1054300.v1.1 MD15G1146100.v1.1
prunus_persica	Prupe.7G268300_v2.0.a1
pyrus_communis	pycom02g00150 pycom15g13120
rosa_chinensis	RchiOBHm_Chr2g0084791
rosa_laevigata	RLG00000015639
rosa_multiflora	Rmu_sc0002352.1_g000001 Rmu_ssc0000436.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155810
rosa_rugosa	Rorug01G0456300
rosa_samantha	Rh2BG005000 Rh2CG005400 Rh2DG004800
rosa_wichuraiana	Rw2G000390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	261, 300
AccB1I	GGYRCC	1 cut(s)	1090
AccI	GTMKAC	1 cut(s)	660
AccII	CGCG	3 cut(s)	14, 329, 408
AclWI	GGATC	8 cut(s)	1304, 1317, 1432, 1492, 1526, 1597, 1633, 1837
AcoI	YGGCCR	2 cut(s)	139, 319
AcsI	RAATTY	1 cut(s)	1113
AcuI	CTGAAG	2 cut(s)	115, 947
AcyI	GRCGYC	3 cut(s)	258, 267, 297
AfaI	GTAC	6 cut(s)	424, 467, 637, 1179, 1281, 1715
AflII	CTTAAG	1 cut(s)	23
AhdI	GACNNNNNGTC	1 cut(s)	1673
AjnI	CCWGG	4 cut(s)	110, 240, 506, 1660
AleI	CACNNNNGTG	1 cut(s)	951
AloI	GAACNNNNNNTCC	2 cut(s)	480, 512
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	3 cut(s)	1085, 1091, 1681
AlwI	GGATC	8 cut(s)	1304, 1317, 1432, 1492, 1526, 1597, 1633, 1837
AlwNI	CAGNNNCTG	2 cut(s)	434, 683
Ama87I	CYCGRG	1 cut(s)	537
AoxI	GGCC	5 cut(s)	139, 243, 319, 390, 1328
ApeKI	GCWGC	6 cut(s)	19, 171, 331, 428, 431, 1877
ApoI	RAATTY	1 cut(s)	1113
AsiSI	GCGATCGC	1 cut(s)	412
Asp700I	GAANNNNTTC	1 cut(s)	276
AspLEI	GCGC	3 cut(s)	19, 171, 331
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	2 cut(s)	827, 1883
AsuII	TTCGAA	1 cut(s)	583
AvaI	CYCGRG	1 cut(s)	537
AxyI	CCTNAGG	1 cut(s)	1595
BaeGI	GKGCMC	1 cut(s)	1066
BaeI	ACNNNNGTAYC	4 cut(s)	627, 660, 1605, 1638
BamHI	GGATCC	1 cut(s)	1309
BanI	GGYRCC	1 cut(s)	1090
BanII	GRGCYC	1 cut(s)	561
BbsI	GAAGAC	5 cut(s)	189, 279, 518, 1672, 1865
Bbv12I	GWGCWC	1 cut(s)	561
BbvCI	CCTCAGC	1 cut(s)	74
BbvI	GCAGC	6 cut(s)	31, 183, 318, 418, 440, 1864
BccI	CCATC	6 cut(s)	311, 587, 865, 1197, 1386, 1745
BceAI	ACGGC	1 cut(s)	441
BciT130I	CCWGG	4 cut(s)	112, 242, 508, 1662
BciVI	GTATCC	2 cut(s)	1606, 1720
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	3 cut(s)	1085, 1091, 1681
BfaI	CTAG	1 cut(s)	722
BfrI	CTTAAG	1 cut(s)	23
BfuI	GTATCC	2 cut(s)	1606, 1720
BlpI	GCTNAGC	1 cut(s)	380
Bme1390I	CCNGG	5 cut(s)	40, 112, 242, 508, 1662
BmeRI	GACNNNNNGTC	1 cut(s)	1673
BmeT110I	CYCGRG	1 cut(s)	537
BmiI	GGNNCC	4 cut(s)	71, 490, 1092, 1311
BmrFI	CCNGG	5 cut(s)	40, 112, 242, 508, 1662
BpiI	GAAGAC	5 cut(s)	189, 279, 518, 1672, 1865
BplI	GAGNNNNNCTC	2 cut(s)	862, 894
Bpu10I	CCTNAGC	1 cut(s)	74
Bpu1102I	GCTNAGC	1 cut(s)	380
Bpu14I	TTCGAA	1 cut(s)	583
BpuEI	CTTGAG	1 cut(s)	1799
BpuMI	CCSGG	1 cut(s)	40
Bsa29I	ATCGAT	2 cut(s)	399, 1647
BsaHI	GRCGYC	3 cut(s)	258, 267, 297
BsaJI	CCNNGG	7 cut(s)	110, 250, 262, 1058, 1680, 1846, 1863
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bse118I	RCCGGY	3 cut(s)	53, 78, 90
Bse1I	ACTGG	4 cut(s)	145, 1053, 1707, 1785
Bse21I	CCTNAGG	1 cut(s)	1595
Bse3DI	GCAATG	1 cut(s)	885
BseBI	CCWGG	4 cut(s)	112, 242, 508, 1662
BseCI	ATCGAT	2 cut(s)	399, 1647
BseDI	CCNNGG	7 cut(s)	110, 250, 262, 1058, 1680, 1846, 1863
BseMI	GCAATG	1 cut(s)	885
BseMII	CTCAG	5 cut(s)	88, 394, 860, 1086, 1332
BseNI	ACTGG	4 cut(s)	145, 1053, 1707, 1785
BseSI	GKGCMC	1 cut(s)	1066
BseX3I	CGGCCG	1 cut(s)	139
BseXI	GCAGC	6 cut(s)	31, 183, 318, 418, 440, 1864
BseYI	CCCAGC	2 cut(s)	176, 414
BsgI	GTGCAG	2 cut(s)	317, 1363
Bsh1236I	CGCG	3 cut(s)	14, 329, 408
Bsh1285I	CGRYCG	5 cut(s)	142, 412, 1479, 1560, 1620
BshFI	GGCC	5 cut(s)	141, 245, 321, 392, 1330
BshNI	GGYRCC	1 cut(s)	1090
BshVI	ATCGAT	2 cut(s)	399, 1647
BsiEI	CGRYCG	5 cut(s)	142, 412, 1479, 1560, 1620
BsiHKAI	GWGCWC	1 cut(s)	561
BsiHKCI	CYCGRG	1 cut(s)	537
BsiSI	CCGG	6 cut(s)	40, 54, 64, 79, 91, 206
BslFI	GGGAC	1 cut(s)	1541
BsmAI	GTCTC	3 cut(s)	1085, 1091, 1681
BsmBI	CGTCTC	1 cut(s)	1681
BsmFI	GGGAC	1 cut(s)	1541
BsmI	GAATGC	1 cut(s)	692
BsnI	GGCC	5 cut(s)	141, 245, 321, 392, 1330
BsoBI	CYCGRG	1 cut(s)	537
Bsp119I	TTCGAA	1 cut(s)	583
Bsp1286I	GDGCHC	2 cut(s)	561, 1066
Bsp1407I	TGTACA	2 cut(s)	465, 1177
Bsp143I	GATC	8 cut(s)	409, 1309, 1424, 1484, 1531, 1602, 1625, 1842
Bsp1720I	GCTNAGC	1 cut(s)	380
Bsp19I	CCATGG	1 cut(s)	262
Bsp68I	TCGCGA	1 cut(s)	408
BspANI	GGCC	5 cut(s)	141, 245, 321, 392, 1330
BspCNI	CTCAG	5 cut(s)	87, 393, 861, 1087, 1333
BspDI	ATCGAT	2 cut(s)	399, 1647
BspFNI	CGCG	3 cut(s)	14, 329, 408
BspLI	GGNNCC	4 cut(s)	71, 490, 1092, 1311
BspPI	GGATC	8 cut(s)	1304, 1317, 1432, 1492, 1526, 1597, 1633, 1837
BspQI	GCTCTTC	1 cut(s)	242
BspT104I	TTCGAA	1 cut(s)	583
BspT107I	GGYRCC	1 cut(s)	1090
BspTI	CTTAAG	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	885
BsrFI	RCCGGY	3 cut(s)	53, 78, 90
BsrGI	TGTACA	2 cut(s)	465, 1177
BsrI	ACTGG	4 cut(s)	145, 1053, 1707, 1785
BssAI	RCCGGY	3 cut(s)	53, 78, 90
BssECI	CCNNGG	7 cut(s)	110, 250, 262, 1058, 1680, 1846, 1863
BssMI	GATC	8 cut(s)	409, 1309, 1424, 1484, 1531, 1602, 1625, 1842
BssNI	GRCGYC	3 cut(s)	258, 267, 297
BssT1I	CCWWGG	4 cut(s)	262, 1058, 1680, 1863
Bst2UI	CCWGG	4 cut(s)	112, 242, 508, 1662
Bst4CI	ACNGT	6 cut(s)	526, 1356, 1480, 1540, 1561, 1621
Bst6I	CTCTTC	2 cut(s)	242, 1200
BstACI	GRCGYC	3 cut(s)	258, 267, 297
BstAFI	CTTAAG	1 cut(s)	23
BstAUI	TGTACA	2 cut(s)	465, 1177
BstBI	TTCGAA	1 cut(s)	583
BstC8I	GCNNGC	7 cut(s)	59, 80, 92, 247, 346, 371, 406
BstDEI	CTNAG	8 cut(s)	74, 380, 820, 869, 1095, 1341, 1595, 1836
BstDSI	CCRYGG	2 cut(s)	262, 1846
BstFNI	CGCG	3 cut(s)	14, 329, 408
BstHHI	GCGC	3 cut(s)	19, 171, 331
BstKTI	GATC	8 cut(s)	412, 1312, 1427, 1487, 1534, 1605, 1628, 1845
BstMAI	GTCTC	3 cut(s)	1085, 1091, 1681
BstMBI	GATC	8 cut(s)	409, 1309, 1424, 1484, 1531, 1602, 1625, 1842
BstMCI	CGRYCG	5 cut(s)	142, 412, 1479, 1560, 1620
BstMWI	GCNNNNNNNGC	9 cut(s)	25, 100, 141, 177, 202, 437, 488, 1049, 1874
BstNI	CCWGG	4 cut(s)	112, 242, 508, 1662
BstNSI	RCATGY	1 cut(s)	899
BstSCI	CCNGG	5 cut(s)	38, 110, 240, 506, 1660
BstSLI	GKGCMC	1 cut(s)	1066
BstUI	CGCG	3 cut(s)	14, 329, 408
BstV1I	GCAGC	6 cut(s)	31, 183, 318, 418, 440, 1864
BstV2I	GAAGAC	5 cut(s)	189, 279, 518, 1672, 1865
BstX2I	RGATCY	3 cut(s)	1309, 1424, 1842
BstYI	RGATCY	3 cut(s)	1309, 1424, 1842
BstZI	CGGCCG	1 cut(s)	139
Bsu15I	ATCGAT	2 cut(s)	399, 1647
Bsu36I	CCTNAGG	1 cut(s)	1595
BsuI	GTATCC	2 cut(s)	1606, 1720
BsuRI	GGCC	5 cut(s)	141, 245, 321, 392, 1330
BsuTUI	ATCGAT	2 cut(s)	399, 1647
BtgI	CCRYGG	2 cut(s)	262, 1846
BtgZI	GCGATG	2 cut(s)	322, 1535
BtsIMutI	CAGTG	1 cut(s)	866
BtuMI	TCGCGA	1 cut(s)	408
Cac8I	GCNNGC	7 cut(s)	59, 80, 92, 247, 346, 371, 406
CaiI	CAGNNNCTG	2 cut(s)	434, 683
CfoI	GCGC	3 cut(s)	19, 171, 331
Cfr10I	RCCGGY	3 cut(s)	53, 78, 90
ClaI	ATCGAT	2 cut(s)	399, 1647
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	6 cut(s)	423, 466, 636, 1178, 1280, 1714
CviAII	CATG	6 cut(s)	226, 263, 784, 806, 896, 934
CviQI	GTAC	6 cut(s)	423, 466, 636, 1178, 1280, 1714
DdeI	CTNAG	8 cut(s)	74, 380, 820, 869, 1095, 1341, 1595, 1836
DpnI	GATC	8 cut(s)	411, 1311, 1426, 1486, 1533, 1604, 1627, 1844
DpnII	GATC	8 cut(s)	409, 1309, 1424, 1484, 1531, 1602, 1625, 1842
DriI	GACNNNNNGTC	1 cut(s)	1673
EaeI	YGGCCR	2 cut(s)	139, 319
EagI	CGGCCG	1 cut(s)	139
Eam1104I	CTCTTC	2 cut(s)	242, 1200
Eam1105I	GACNNNNNGTC	1 cut(s)	1673
EarI	CTCTTC	2 cut(s)	242, 1200
EciI	GGCGGA	3 cut(s)	82, 130, 1700
Ecl136II	GAGCTC	1 cut(s)	559
EclXI	CGGCCG	1 cut(s)	139
Eco130I	CCWWGG	4 cut(s)	262, 1058, 1680, 1863
Eco24I	GRGCYC	1 cut(s)	561
Eco32I	GATATC	1 cut(s)	996
Eco52I	CGGCCG	1 cut(s)	139
Eco53kI	GAGCTC	1 cut(s)	559
Eco57I	CTGAAG	2 cut(s)	115, 947
Eco81I	CCTNAGG	1 cut(s)	1595
Eco88I	CYCGRG	1 cut(s)	537
EcoICRI	GAGCTC	1 cut(s)	559
EcoRII	CCWGG	4 cut(s)	110, 240, 506, 1660
EcoRV	GATATC	1 cut(s)	996
EcoT14I	CCWWGG	4 cut(s)	262, 1058, 1680, 1863
EcoT22I	ATGCAT	2 cut(s)	692, 1138
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	4 cut(s)	262, 1058, 1680, 1863
Esp3I	CGTCTC	1 cut(s)	1681
FaeI	CATG	6 cut(s)	229, 266, 787, 809, 899, 937
FaqI	GGGAC	1 cut(s)	1541
FatI	CATG	6 cut(s)	225, 262, 783, 805, 895, 933
FauI	CCCGC	1 cut(s)	1518
FblI	GTMKAC	1 cut(s)	660
FriOI	GRGCYC	1 cut(s)	561
FspBI	CTAG	1 cut(s)	722
GlaI	GCGC	3 cut(s)	18, 170, 330
GsaI	CCCAGC	2 cut(s)	180, 418
HaeIII	GGCC	5 cut(s)	141, 245, 321, 392, 1330
HapII	CCGG	6 cut(s)	40, 54, 64, 79, 91, 206
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	3 cut(s)	19, 171, 331
Hin1I	GRCGYC	3 cut(s)	258, 267, 297
Hin1II	CATG	6 cut(s)	229, 266, 787, 809, 899, 937
Hin6I	GCGC	3 cut(s)	17, 169, 329
HinP1I	GCGC	3 cut(s)	17, 169, 329
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	1412
HpaII	CCGG	6 cut(s)	40, 54, 64, 79, 91, 206
HphI	GGTGA	2 cut(s)	827, 1883
Hpy166II	GTNNAC	4 cut(s)	301, 466, 661, 1178
Hpy188I	TCNGA	6 cut(s)	193, 501, 679, 927, 1148, 1342
Hpy8I	GTNNAC	4 cut(s)	301, 466, 661, 1178
Hpy99I	CGWCG	5 cut(s)	260, 272, 365, 749, 1492
HpyAV	CCTTC	7 cut(s)	287, 472, 721, 922, 1226, 1687, 1717
HpyCH4III	ACNGT	6 cut(s)	526, 1356, 1480, 1540, 1561, 1621
HpyCH4IV	ACGT	7 cut(s)	258, 297, 363, 611, 716, 744, 1674
HpyF10VI	GCNNNNNNNGC	9 cut(s)	25, 100, 141, 177, 202, 437, 488, 1049, 1874
HpyF3I	CTNAG	8 cut(s)	74, 380, 820, 869, 1095, 1341, 1595, 1836
HpySE526I	ACGT	7 cut(s)	258, 297, 363, 611, 716, 744, 1674
Hsp92I	GRCGYC	3 cut(s)	258, 267, 297
Hsp92II	CATG	6 cut(s)	229, 266, 787, 809, 899, 937
HspAI	GCGC	3 cut(s)	17, 169, 329
KroI	GCCGGC	2 cut(s)	78, 90
KroNI	GCCGGC	2 cut(s)	80, 92
Kzo9I	GATC	8 cut(s)	409, 1309, 1424, 1484, 1531, 1602, 1625, 1842
LguI	GCTCTTC	1 cut(s)	242
LmnI	GCTCC	3 cut(s)	66, 488, 571
Lsp1109I	GCAGC	6 cut(s)	31, 183, 318, 418, 440, 1864
MaeI	CTAG	1 cut(s)	722
MaeII	ACGT	7 cut(s)	258, 297, 363, 611, 716, 744, 1674
MaeIII	GTNAC	4 cut(s)	353, 766, 815, 983
MalI	GATC	8 cut(s)	411, 1311, 1426, 1486, 1533, 1604, 1627, 1844
MboI	GATC	8 cut(s)	409, 1309, 1424, 1484, 1531, 1602, 1625, 1842
MflI	RGATCY	3 cut(s)	1309, 1424, 1842
MhlI	GDGCHC	2 cut(s)	561, 1066
MluCI	AATT	7 cut(s)	710, 902, 937, 1113, 1435, 1495, 1576
MlyI	GAGTC	3 cut(s)	182, 212, 1143
MmeI	TCCRAC	5 cut(s)	1338, 1462, 1543, 1559, 1603
Mph1103I	ATGCAT	2 cut(s)	692, 1138
MroNI	GCCGGC	2 cut(s)	78, 90
MroXI	GAANNNNTTC	1 cut(s)	276
MseI	TTAA	2 cut(s)	24, 1410
MslI	CAYNNNNRTG	1 cut(s)	951
MspA1I	CMGCKG	1 cut(s)	431
MspCI	CTTAAG	1 cut(s)	23
MspI	CCGG	6 cut(s)	40, 54, 64, 79, 91, 206
MspR9I	CCNGG	5 cut(s)	40, 112, 242, 508, 1662
Mva1269I	GAATGC	1 cut(s)	692
MvaI	CCWGG	4 cut(s)	112, 242, 508, 1662
MvnI	CGCG	3 cut(s)	14, 329, 408
MwoI	GCNNNNNNNGC	9 cut(s)	25, 100, 141, 177, 202, 437, 488, 1049, 1874
NaeI	GCCGGC	2 cut(s)	80, 92
NciI	CCSGG	1 cut(s)	40
NcoI	CCATGG	1 cut(s)	262
NdeII	GATC	8 cut(s)	409, 1309, 1424, 1484, 1531, 1602, 1625, 1842
NgoMIV	GCCGGC	2 cut(s)	78, 90
NlaIII	CATG	6 cut(s)	229, 266, 787, 809, 899, 937
NlaIV	GGNNCC	4 cut(s)	71, 490, 1092, 1311
NmeAIII	GCCGAG	1 cut(s)	275
NmuCI	GTSAC	3 cut(s)	353, 815, 983
NruI	TCGCGA	1 cut(s)	408
NsiI	ATGCAT	2 cut(s)	692, 1138
NspI	RCATGY	1 cut(s)	899
NspV	TTCGAA	1 cut(s)	583
OliI	CACNNNNGTG	1 cut(s)	951
PaeR7I	CTCGAG	1 cut(s)	537
PciSI	GCTCTTC	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	5 cut(s)	158, 264, 345, 405, 1536
PctI	GAATGC	1 cut(s)	692
PdiI	GCCGGC	2 cut(s)	80, 92
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	7 cut(s)	163, 211, 1002, 1450, 1472, 1510, 1543
PfoI	TCCNGGA	1 cut(s)	1660
Ple19I	CGATCG	1 cut(s)	412
PleI	GAGTC	3 cut(s)	182, 212, 1143
PpsI	GAGTC	3 cut(s)	182, 212, 1143
Psp124BI	GAGCTC	1 cut(s)	561
Psp6I	CCWGG	4 cut(s)	110, 240, 506, 1660
PspFI	CCCAGC	2 cut(s)	176, 414
PspGI	CCWGG	4 cut(s)	110, 240, 506, 1660
PspN4I	GGNNCC	4 cut(s)	71, 490, 1092, 1311
PstNI	CAGNNNCTG	2 cut(s)	434, 683
PsuI	RGATCY	3 cut(s)	1309, 1424, 1842
PvuI	CGATCG	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	431
RgaI	GCGATCGC	1 cut(s)	412
RruI	TCGCGA	1 cut(s)	408
RsaI	GTAC	6 cut(s)	424, 467, 637, 1179, 1281, 1715
RsaNI	GTAC	6 cut(s)	423, 466, 636, 1178, 1280, 1714
RseI	CAYNNNNRTG	1 cut(s)	951
SacI	GAGCTC	1 cut(s)	561
SapI	GCTCTTC	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	24, 1410
Sau3AI	GATC	8 cut(s)	409, 1309, 1424, 1484, 1531, 1602, 1625, 1842
SchI	GAGTC	3 cut(s)	182, 212, 1143
ScrFI	CCNGG	5 cut(s)	40, 112, 242, 508, 1662
SduI	GDGCHC	2 cut(s)	561, 1066
SfaAI	GCGATCGC	1 cut(s)	412
Sfr274I	CTCGAG	1 cut(s)	537
SfuI	TTCGAA	1 cut(s)	583
SgfI	GCGATCGC	1 cut(s)	412
SlaI	CTCGAG	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	951
SmlI	CTYRAG	3 cut(s)	23, 537, 1814
SmoI	CTYRAG	3 cut(s)	23, 537, 1814
Sse9I	AATT	7 cut(s)	710, 902, 937, 1113, 1435, 1495, 1576
SspI	AATATT	1 cut(s)	964
SspMI	CTAG	1 cut(s)	722
SstI	GAGCTC	1 cut(s)	561
StyD4I	CCNGG	5 cut(s)	38, 110, 240, 506, 1660
StyI	CCWWGG	4 cut(s)	262, 1058, 1680, 1863
TaaI	ACNGT	6 cut(s)	526, 1356, 1480, 1540, 1561, 1621
TaiI	ACGT	7 cut(s)	261, 300, 366, 614, 719, 747, 1677
TaqII	GACCGA	1 cut(s)	1630
TasI	AATT	7 cut(s)	710, 902, 937, 1113, 1435, 1495, 1576
TatI	WGTACW	3 cut(s)	465, 1177, 1279
TauI	GCSGC	5 cut(s)	17, 144, 324, 344, 387
TfiI	GAWTC	7 cut(s)	163, 211, 1002, 1450, 1472, 1510, 1543
Tru1I	TTAA	2 cut(s)	24, 1410
Tru9I	TTAA	2 cut(s)	24, 1410
TscAI	CASTG	1 cut(s)	873
TseFI	GTSAC	3 cut(s)	353, 815, 983
TseI	GCWGC	6 cut(s)	19, 171, 331, 428, 431, 1877
Tsp45I	GTSAC	3 cut(s)	353, 815, 983
TspDTI	ATGAA	4 cut(s)	723, 950, 1125, 1604
TspGWI	ACGGA	4 cut(s)	190, 473, 1595, 1835
TspRI	CASTG	1 cut(s)	873
Vha464I	CTTAAG	1 cut(s)	23
XapI	RAATTY	1 cut(s)	1113
XceI	RCATGY	1 cut(s)	899
XhoI	CTCGAG	1 cut(s)	537
XmiI	GTMKAC	1 cut(s)	660
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	1 cut(s)	722
ZraI	GACGTC	2 cut(s)	259, 298
Zsp2I	ATGCAT	2 cut(s)	692, 1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.