Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009325

Physical Location & Seq

Genomic Coordinates Reverse (-)

22314637 .. 22316625

Gene Structure 1989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGTGACGATTCTATCAACTCCTCTCTCTCCAAGACTTACATTTCTCTGTGAAACAAAACTGTCATTATCTCGGAGCAATCGCTCGGTATGTTGTTCATTGAGTGAAGAACCAAAAGACCAATGCTTGAGTCGGAGAAGTCTTGTTTATGTTTTAGTTGCTTCGCCGTGTTTGTTGTTACCAGCGTTGTCTTCATCTGCGAAGACTAAATCAAAGAGTCCTTATGATGAGAGACGGTTACTAGAACAGAACAAGAGGATACAGAGAGAGAACAATGCTCCTGACGAGTTTCCTAACTTTGTTAGAGAAGGTTTTGAGGTTAAGGTATTAGCTTCTGATAATTACATCAAGGCTGATTCTGGCCTCATATATCGGGATTTCAATGTTGGTCAAGGTGATTTCCCAAAAGATGGTCAGCAGGTGACTTTTCACTACATTGGCTACAATGAGTCTGGAAGGCGAATAGATAGTACTTACATACAAGGTTCTCCTGCTAGAATCCGCATGGGAACCAATGCACTTGTTCCAGGATTTGAAATGGGAATTCGTGACATGAAGCCCGGTGGGCGAAGAAGGATTATAATCCCTCCAGAATTGGGACCTCCGGTGGGACCTTCGACCTTCTTCAGCTCGAAGCAATTTGAAGTTTTCGACGTGGAGTTGCTCAGTATCCAGAATTGTGAGAGGAGGACTATAATAGGTTTCTACTCAGATGTCACATGCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0016491 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0019684 GO:0022607 GO:0031977 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0055114 GO:0061077 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

242

Amino Acids

27.19

Weight (kDa)

8.83

Isoelectric Point (pI)

60.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	163 - 229	4.6e-16	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60370 AT3G60370
fragaria_vesca	FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860
malus_domestica	MD02G1216500.v1.1
prunus_persica	Prupe.2G127600_v2.0.a1
pyrus_communis	pycom02g17810
rosa_chinensis	RchiOBHm_Chr1g0347401
rosa_laevigata	RLG00000028753
rosa_multiflora	Rmu_sc0009756.1_g000001 Rmu_sc0017677.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307850
rosa_rugosa	Rorug01G0186400 Rorug01G0186500
rosa_samantha	Rh1AG204100 Rh1BG169800 Rh1CG189200 Rh1DG200200
rosa_wichuraiana	Rw1G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	581
AarI	CACCTGC	1 cut(s)	409
Acc36I	ACCTGC	1 cut(s)	409
AccB7I	CCANNNNNTGG	1 cut(s)	410
AciI	CCGC	1 cut(s)	502
AcsI	RAATTY	1 cut(s)	543
AcuI	CTGAAG	1 cut(s)	610
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	3 cut(s)	410, 596, 608
AgsI	TTSAA	3 cut(s)	382, 536, 644
AjiI	CACGTC	1 cut(s)	655
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	2 cut(s)	332, 630
AluI	AGCT	2 cut(s)	332, 630
Alw26I	GTCTC	1 cut(s)	226
AoxI	GGCC	1 cut(s)	361
ApoI	RAATTY	1 cut(s)	543
AspS9I	GGNCC	2 cut(s)	599, 611
AsuC2I	CCSGG	1 cut(s)	561
AsuHPI	GGTGA	3 cut(s)	16, 407, 433
AvaII	GGWCC	2 cut(s)	599, 611
BbsI	GAAGAC	2 cut(s)	183, 209
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	528
BciVI	GTATCC	2 cut(s)	252, 680
BcnI	CCSGG	1 cut(s)	561
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	2 cut(s)	242, 495
BfuAI	ACCTGC	1 cut(s)	409
BfuI	GTATCC	2 cut(s)	252, 680
BglI	GCCNNNNNGGC	1 cut(s)	565
BmcAI	AGTACT	1 cut(s)	472
Bme1390I	CCNGG	2 cut(s)	528, 561
Bme18I	GGWCC	2 cut(s)	599, 611
BmgBI	CACGTC	1 cut(s)	655
BmgT120I	GGNCC	2 cut(s)	599, 611
BmiI	GGNNCC	3 cut(s)	511, 600, 612
BmrFI	CCNGG	2 cut(s)	528, 561
BpiI	GAAGAC	2 cut(s)	183, 209
BpmI	CTGGAG	1 cut(s)	573
BpuEI	CTTGAG	1 cut(s)	148
BpuMI	CCSGG	1 cut(s)	561
BsaBI	GATNNNNATC	1 cut(s)	581
BsaWI	WCCGGW	1 cut(s)	604
Bsc4I	CCNNNNNNNGG	3 cut(s)	410, 596, 608
Bse8I	GATNNNNATC	1 cut(s)	581
BseBI	CCWGG	1 cut(s)	528
BseJI	GATNNNNATC	1 cut(s)	581
BseLI	CCNNNNNNNGG	3 cut(s)	410, 596, 608
BseMII	CTCAG	2 cut(s)	679, 723
BseRI	GAGGAG	2 cut(s)	12, 700
BshFI	GGCC	1 cut(s)	363
BsiSI	CCGG	2 cut(s)	561, 605
BslFI	GGGAC	2 cut(s)	612, 624
BslI	CCNNNNNNNGG	3 cut(s)	410, 596, 608
BsmAI	GTCTC	1 cut(s)	226
BsmBI	CGTCTC	1 cut(s)	226
BsmFI	GGGAC	2 cut(s)	612, 624
BsnI	GGCC	1 cut(s)	363
BspACI	CCGC	1 cut(s)	502
BspANI	GGCC	1 cut(s)	363
BspCNI	CTCAG	2 cut(s)	678, 722
BspLI	GGNNCC	3 cut(s)	511, 600, 612
BspMI	ACCTGC	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	63, 237
BstDEI	CTNAG	2 cut(s)	665, 709
BstMAI	GTCTC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	565
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	1 cut(s)	723
BstSCI	CCNGG	2 cut(s)	526, 559
BstV2I	GAAGAC	2 cut(s)	183, 209
BsuI	GTATCC	2 cut(s)	252, 680
BsuRI	GGCC	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	655
BveI	ACCTGC	1 cut(s)	409
Cfr13I	GGNCC	2 cut(s)	599, 611
Csp6I	GTAC	1 cut(s)	471
CviAII	CATG	3 cut(s)	505, 553, 720
CviJI	RGCY	6 cut(s)	332, 353, 363, 441, 559, 630
CviKI_1	RGCY	6 cut(s)	332, 353, 363, 441, 559, 630
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	2 cut(s)	665, 709
Eco47I	GGWCC	2 cut(s)	599, 611
Eco57I	CTGAAG	1 cut(s)	610
EcoO109I	RGGNCCY	2 cut(s)	599, 611
EcoRI	GAATTC	1 cut(s)	543
EcoRII	CCWGG	1 cut(s)	526
Esp3I	CGTCTC	1 cut(s)	226
FaeI	CATG	3 cut(s)	508, 556, 723
FaqI	GGGAC	2 cut(s)	612, 624
FatI	CATG	3 cut(s)	504, 552, 719
FspBI	CTAG	2 cut(s)	242, 495
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	1 cut(s)	363
HapII	CCGG	2 cut(s)	561, 605
Hin1II	CATG	3 cut(s)	508, 556, 723
HinfI	GANTC	6 cut(s)	10, 130, 217, 356, 449, 498
HpaII	CCGG	2 cut(s)	561, 605
HphI	GGTGA	3 cut(s)	16, 407, 433
Hpy188I	TCNGA	4 cut(s)	75, 135, 337, 712
Hpy188III	TCNNGA	6 cut(s)	281, 374, 453, 548, 590, 673
Hpy99I	CGWCG	1 cut(s)	656
HpyAV	CCTTC	5 cut(s)	302, 450, 567, 624, 631
HpyCH4III	ACNGT	2 cut(s)	63, 237
HpyCH4IV	ACGT	1 cut(s)	654
HpyCH4V	TGCA	2 cut(s)	518, 723
HpyF10VI	GCNNNNNNNGC	1 cut(s)	565
HpyF3I	CTNAG	2 cut(s)	665, 709
HpySE526I	ACGT	1 cut(s)	654
Hsp92II	CATG	3 cut(s)	508, 556, 723
LmnI	GCTCC	2 cut(s)	75, 283
MaeI	CTAG	2 cut(s)	242, 495
MaeII	ACGT	1 cut(s)	654
MaeIII	GTNAC	6 cut(s)	4, 177, 237, 421, 548, 715
MboII	GAAGA	5 cut(s)	119, 183, 214, 582, 616
MluCI	AATT	5 cut(s)	340, 543, 593, 638, 676
MlyI	GAGTC	3 cut(s)	139, 226, 458
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	8 cut(s)	33, 249, 310, 374, 597, 612, 678, 681
MseI	TTAA	2 cut(s)	321, 727
MspI	CCGG	2 cut(s)	561, 605
MspR9I	CCNGG	2 cut(s)	528, 561
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	565
NciI	CCSGG	1 cut(s)	561
NlaIII	CATG	3 cut(s)	508, 556, 723
NlaIV	GGNNCC	3 cut(s)	511, 600, 612
NmuCI	GTSAC	4 cut(s)	4, 421, 548, 715
NspI	RCATGY	1 cut(s)	723
PaqCI	CACCTGC	1 cut(s)	409
PfeI	GAWTC	3 cut(s)	10, 356, 498
PflMI	CCANNNNNTGG	1 cut(s)	410
PfoI	TCCNGGA	1 cut(s)	526
PleI	GAGTC	3 cut(s)	138, 225, 457
PpsI	GAGTC	3 cut(s)	138, 225, 457
PpuMI	RGGWCCY	2 cut(s)	599, 611
PsiI	TTATAA	1 cut(s)	581
Psp5II	RGGWCCY	2 cut(s)	599, 611
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	3 cut(s)	511, 600, 612
PspPI	GGNCC	2 cut(s)	599, 611
PspPPI	RGGWCCY	2 cut(s)	599, 611
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
SaqAI	TTAA	2 cut(s)	321, 727
Sau96I	GGNCC	2 cut(s)	599, 611
ScaI	AGTACT	1 cut(s)	472
SchI	GAGTC	3 cut(s)	139, 226, 458
ScrFI	CCNGG	2 cut(s)	528, 561
SinI	GGWCC	2 cut(s)	599, 611
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	5 cut(s)	340, 543, 593, 638, 676
SsiI	CCGC	1 cut(s)	502
SspMI	CTAG	2 cut(s)	242, 495
StyD4I	CCNGG	2 cut(s)	526, 559
TaaI	ACNGT	2 cut(s)	63, 237
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	3 cut(s)	617, 632, 651
TasI	AATT	5 cut(s)	340, 543, 593, 638, 676
TatI	WGTACW	1 cut(s)	470
TfiI	GAWTC	3 cut(s)	10, 356, 498
Tru1I	TTAA	2 cut(s)	321, 727
Tru9I	TTAA	2 cut(s)	321, 727
TseFI	GTSAC	4 cut(s)	4, 421, 548, 715
Tsp45I	GTSAC	4 cut(s)	4, 421, 548, 715
TspDTI	ATGAA	3 cut(s)	87, 183, 569
Van91I	CCANNNNNTGG	1 cut(s)	410
VpaK11BI	GGWCC	2 cut(s)	599, 611
XapI	RAATTY	1 cut(s)	543
XceI	RCATGY	1 cut(s)	723
XspI	CTAG	2 cut(s)	242, 495
ZrmI	AGTACT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.