Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009325

Physical Location & Seq

Genomic Coordinates Reverse (-)

24760165 .. 24763834

Gene Structure 3670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1216500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCTGATGATTCCCTCTTCTCTCGCTTTTAAACCCTCTCCCTTACTAAGGATTCATTTGAATCAGAATAACCAAATAATACAATGCTGCTCGAGTCATGACTCGAGACATCACAGAACTGGGGAAAAGAGCCGTGGCATATCACATTACGAAGAGAATTTGAGTCGGAGGCTTCTCCTATTTCTTTCGGTCACAACTAGCTTGTTTCCAAATTTATCTTCTTCTGCAAAGACAAAGAGTAAAAGTCCATTTGATGAAAGGCGCTTACTTGAACAAAACAAGCGGATACAGAAAGAAAATAATGCACCCGAAGACTTTCCAAGTTTCATTAGAGAAGGTTTTCAGGTTCAGGTAGTAACGCCACCAAACTACATCACACGAGACTCGGGGCTTATATTTCGGGATTTTGTAGTTGGTGAAGGTGATTGCCCAGAGGCTGGTCAACAGGTGATGTTCCACTATATTGGATACAACGAGTCAGGCCGGCGTATTGACAGCAGTTACACGCAGGGTTCTCCGGCCAGAATCCGCATGGGCACAAATGCATTGGTCCCAGGATTTGAAGAAGGAATTCGTGACATGAAACCTGGAGGGAAAAGAAGAATAATCATTCCACCAGAACTTGGACCGCCGGTCGGACCGTCCACCTTCTTCAGCTCGAAACAGTTTGAAGTTTTTGATGTGGAACTACTAAGCATTCAGAACTGTCAAAGGAGGACAGTCCTAGCTTTCTACTCCGATTTTGTATGCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0016491 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0019684 GO:0022607 GO:0031977 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0055114 GO:0061077 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

252

Amino Acids

28.49

Weight (kDa)

9.01

Isoelectric Point (pI)

57.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	144 - 209	1.1e-16	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60370 AT3G60370
fragaria_vesca	FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860
malus_domestica	MD02G1216500.v1.1
prunus_persica	Prupe.2G127600_v2.0.a1
pyrus_communis	pycom02g17810
rosa_chinensis	RchiOBHm_Chr1g0347401
rosa_laevigata	RLG00000028753
rosa_multiflora	Rmu_sc0009756.1_g000001 Rmu_sc0017677.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307850
rosa_rugosa	Rorug01G0186400 Rorug01G0186500
rosa_samantha	Rh1AG204100 Rh1BG169800 Rh1CG189200 Rh1DG200200
rosa_wichuraiana	Rw1G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	437, 623
AciI	CCGC	3 cut(s)	283, 529, 629
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	3 cut(s)	157, 211, 570
AcuI	CTGAAG	1 cut(s)	637
AfiI	CCNNNNNNNGG	4 cut(s)	48, 437, 623, 635
AgsI	TTSAA	4 cut(s)	61, 272, 563, 671
AhdI	GACNNNNNGTC	1 cut(s)	632
AjnI	CCWGG	2 cut(s)	553, 586
AjuI	GAANNNNNNNTTGG	2 cut(s)	202, 234
AluBI	AGCT	3 cut(s)	201, 657, 728
AluI	AGCT	3 cut(s)	201, 657, 728
Alw26I	GTCTC	2 cut(s)	100, 375
AlwNI	CAGNNNCTG	1 cut(s)	437
Ama87I	CYCGRG	3 cut(s)	91, 103, 385
AoxI	GGCC	2 cut(s)	481, 519
ApeKI	GCWGC	1 cut(s)	87
ApoI	RAATTY	3 cut(s)	157, 211, 570
Asp700I	GAANNNNTTC	3 cut(s)	315, 339, 570
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	3 cut(s)	550, 626, 638
AsuHPI	GGTGA	3 cut(s)	428, 434, 460
AvaI	CYCGRG	3 cut(s)	91, 103, 385
AvaII	GGWCC	3 cut(s)	550, 626, 638
BaeGI	GKGCMC	1 cut(s)	539
BauI	CACGAG	1 cut(s)	378
BbsI	GAAGAC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	117
BciT130I	CCWGG	2 cut(s)	555, 588
BciVI	GTATCC	2 cut(s)	279, 461
BcoDI	GTCTC	2 cut(s)	100, 375
BfaI	CTAG	2 cut(s)	198, 725
BfoI	RGCGCY	1 cut(s)	265
BfuI	GTATCC	2 cut(s)	279, 461
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	2 cut(s)	555, 588
Bme18I	GGWCC	3 cut(s)	550, 626, 638
BmeRI	GACNNNNNGTC	1 cut(s)	632
BmeT110I	CYCGRG	3 cut(s)	91, 103, 385
BmgT120I	GGNCC	3 cut(s)	550, 626, 638
BmiI	GGNNCC	1 cut(s)	552
BmrFI	CCNGG	2 cut(s)	555, 588
BmrI	ACTGGG	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	609
BsaJI	CCNNGG	2 cut(s)	133, 553
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 437, 623, 635
Bse118I	RCCGGY	2 cut(s)	483, 631
Bse1I	ACTGG	1 cut(s)	124
BseBI	CCWGG	2 cut(s)	555, 588
BseDI	CCNNGG	2 cut(s)	133, 553
BseLI	CCNNNNNNNGG	4 cut(s)	48, 437, 623, 635
BseNI	ACTGG	1 cut(s)	124
BseSI	GKGCMC	1 cut(s)	539
BseXI	GCAGC	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	636
BshFI	GGCC	2 cut(s)	483, 521
BsiEI	CGRYCG	1 cut(s)	636
BsiHKCI	CYCGRG	3 cut(s)	91, 103, 385
BsiSI	CCGG	3 cut(s)	484, 518, 632
BslFI	GGGAC	1 cut(s)	536
BslI	CCNNNNNNNGG	4 cut(s)	48, 437, 623, 635
BsmAI	GTCTC	2 cut(s)	100, 375
BsmFI	GGGAC	1 cut(s)	536
BsmI	GAATGC	1 cut(s)	696
BsnI	GGCC	2 cut(s)	483, 521
BsoBI	CYCGRG	3 cut(s)	91, 103, 385
Bsp1286I	GDGCHC	1 cut(s)	539
BspACI	CCGC	3 cut(s)	283, 529, 629
BspANI	GGCC	2 cut(s)	483, 521
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	552
BsrFI	RCCGGY	2 cut(s)	483, 631
BsrI	ACTGG	1 cut(s)	124
BssAI	RCCGGY	2 cut(s)	483, 631
BssECI	CCNNGG	2 cut(s)	133, 553
BssSI	CACGAG	1 cut(s)	378
Bst2BI	CACGAG	1 cut(s)	378
Bst2UI	CCWGG	2 cut(s)	555, 588
Bst4CI	ACNGT	4 cut(s)	642, 666, 707, 721
Bst6I	CTCTTC	2 cut(s)	22, 147
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	2 cut(s)	47, 692
BstDSI	CCRYGG	1 cut(s)	133
BstENI	CCTNNNNNAGG	1 cut(s)	46
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	264
BstMAI	GTCTC	2 cut(s)	100, 375
BstMCI	CGRYCG	1 cut(s)	636
BstNI	CCWGG	2 cut(s)	555, 588
BstSCI	CCNGG	2 cut(s)	553, 586
BstSLI	GKGCMC	1 cut(s)	539
BstV1I	GCAGC	1 cut(s)	74
BstV2I	GAAGAC	1 cut(s)	318
BstXI	CCANNNNNNTGG	1 cut(s)	464
BsuI	GTATCC	2 cut(s)	279, 461
BsuRI	GGCC	2 cut(s)	483, 521
BtgI	CCRYGG	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	485
CaiI	CAGNNNCTG	1 cut(s)	437
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	1 cut(s)	264
Cfr10I	RCCGGY	2 cut(s)	483, 631
Cfr13I	GGNCC	3 cut(s)	550, 626, 638
CpoI	CGGWCCG	1 cut(s)	638
CspI	CGGWCCG	1 cut(s)	638
CviAII	CATG	3 cut(s)	98, 532, 580
CviJI	RGCY	9 cut(s)	132, 172, 201, 391, 437, 483, 521, 657, 728
CviKI_1	RGCY	9 cut(s)	132, 172, 201, 391, 437, 483, 521, 657, 728
DdeI	CTNAG	2 cut(s)	47, 692
DraI	TTTAAA	1 cut(s)	31
DriI	GACNNNNNGTC	1 cut(s)	632
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	2 cut(s)	22, 147
Eam1105I	GACNNNNNGTC	1 cut(s)	632
EarI	CTCTTC	2 cut(s)	22, 147
Eco47I	GGWCC	3 cut(s)	550, 626, 638
Eco57I	CTGAAG	1 cut(s)	637
Eco88I	CYCGRG	3 cut(s)	91, 103, 385
EcoNI	CCTNNNNNAGG	1 cut(s)	46
EcoRI	GAATTC	1 cut(s)	570
EcoRII	CCWGG	2 cut(s)	553, 586
EcoT22I	ATGCAT	1 cut(s)	547
FaeI	CATG	3 cut(s)	101, 535, 583
FaiI	YATR	7 cut(s)	99, 140, 395, 462, 533, 581, 748
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	3 cut(s)	97, 531, 579
Fnu4HI	GCNGC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	2 cut(s)	198, 725
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	609
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	2 cut(s)	483, 521
HapII	CCGG	3 cut(s)	484, 518, 632
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	3 cut(s)	101, 535, 583
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HincII	GTYRAC	1 cut(s)	443
HindII	GTYRAC	1 cut(s)	443
HinfI	GANTC	9 cut(s)	10, 52, 61, 94, 101, 163, 383, 476, 525
HpaII	CCGG	3 cut(s)	484, 518, 632
HphI	GGTGA	3 cut(s)	428, 434, 460
Hpy166II	GTNNAC	2 cut(s)	443, 645
Hpy188I	TCNGA	5 cut(s)	66, 168, 638, 702, 739
Hpy188III	TCNNGA	4 cut(s)	98, 105, 401, 575
Hpy8I	GTNNAC	2 cut(s)	443, 645
HpyAV	CCTTC	4 cut(s)	329, 413, 560, 658
HpyCH4III	ACNGT	4 cut(s)	642, 666, 707, 721
HpyCH4V	TGCA	3 cut(s)	227, 305, 545
HpyF3I	CTNAG	2 cut(s)	47, 692
Hsp92II	CATG	3 cut(s)	101, 535, 583
HspAI	GCGC	1 cut(s)	262
KroI	GCCGGC	1 cut(s)	483
KroNI	GCCGGC	1 cut(s)	485
Lsp1109I	GCAGC	1 cut(s)	74
MaeI	CTAG	2 cut(s)	198, 725
MaeIII	GTNAC	4 cut(s)	190, 355, 500, 575
MboII	GAAGA	8 cut(s)	9, 164, 210, 213, 323, 575, 612, 643
MhlI	GDGCHC	1 cut(s)	539
MluCI	AATT	3 cut(s)	157, 211, 570
MlyI	GAGTC	5 cut(s)	95, 103, 172, 377, 485
MmeI	TCCRAC	2 cut(s)	146, 616
MnlI	CCTC	6 cut(s)	25, 46, 162, 427, 584, 708
Mph1103I	ATGCAT	1 cut(s)	547
MroNI	GCCGGC	1 cut(s)	483
MroXI	GAANNNNTTC	3 cut(s)	315, 339, 570
MseI	TTAA	1 cut(s)	30
MspI	CCGG	3 cut(s)	484, 518, 632
MspR9I	CCNGG	2 cut(s)	555, 588
Mva1269I	GAATGC	1 cut(s)	696
MvaI	CCWGG	2 cut(s)	555, 588
NaeI	GCCGGC	1 cut(s)	485
NgoMIV	GCCGGC	1 cut(s)	483
NlaIII	CATG	3 cut(s)	101, 535, 583
NlaIV	GGNNCC	1 cut(s)	552
NmuCI	GTSAC	2 cut(s)	190, 575
NsiI	ATGCAT	1 cut(s)	547
PaeR7I	CTCGAG	2 cut(s)	91, 103
PagI	TCATGA	1 cut(s)	97
PctI	GAATGC	1 cut(s)	696
PdiI	GCCGGC	1 cut(s)	485
PdmI	GAANNNNTTC	3 cut(s)	315, 339, 570
PfeI	GAWTC	4 cut(s)	10, 52, 61, 525
PflMI	CCANNNNNTGG	2 cut(s)	437, 623
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	5 cut(s)	95, 102, 171, 377, 484
PpsI	GAGTC	5 cut(s)	95, 102, 171, 377, 484
Psp6I	CCWGG	2 cut(s)	553, 586
PspGI	CCWGG	2 cut(s)	553, 586
PspN4I	GGNNCC	1 cut(s)	552
PspPI	GGNCC	3 cut(s)	550, 626, 638
PspXI	VCTCGAGB	1 cut(s)	91
PstNI	CAGNNNCTG	1 cut(s)	437
Rsr2I	CGGWCCG	1 cut(s)	638
RsrII	CGGWCCG	1 cut(s)	638
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	88
Sau96I	GGNCC	3 cut(s)	550, 626, 638
SchI	GAGTC	5 cut(s)	95, 103, 172, 377, 485
ScrFI	CCNGG	2 cut(s)	555, 588
SduI	GDGCHC	1 cut(s)	539
Sfr274I	CTCGAG	2 cut(s)	91, 103
SinI	GGWCC	3 cut(s)	550, 626, 638
SlaI	CTCGAG	2 cut(s)	91, 103
SmlI	CTYRAG	2 cut(s)	91, 103
SmoI	CTYRAG	2 cut(s)	91, 103
Sse9I	AATT	3 cut(s)	157, 211, 570
SsiI	CCGC	3 cut(s)	283, 529, 629
SspMI	CTAG	2 cut(s)	198, 725
StyD4I	CCNGG	2 cut(s)	553, 586
TaaI	ACNGT	4 cut(s)	642, 666, 707, 721
TaqI	TCGA	3 cut(s)	92, 104, 659
TaqII	GACCGA	1 cut(s)	178
TasI	AATT	3 cut(s)	157, 211, 570
TfiI	GAWTC	4 cut(s)	10, 52, 61, 525
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseFI	GTSAC	2 cut(s)	190, 575
TseI	GCWGC	1 cut(s)	87
Tsp45I	GTSAC	2 cut(s)	190, 575
TspDTI	ATGAA	4 cut(s)	44, 270, 316, 596
Van91I	CCANNNNNTGG	2 cut(s)	437, 623
VpaK11BI	GGWCC	3 cut(s)	550, 626, 638
XagI	CCTNNNNNAGG	1 cut(s)	46
XapI	RAATTY	3 cut(s)	157, 211, 570
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XhoI	CTCGAG	2 cut(s)	91, 103
XmnI	GAANNNNTTC	3 cut(s)	315, 339, 570
XspI	CTAG	2 cut(s)	198, 725
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.