Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009756.1

Orthogroup ID

OG0009325

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5114

Gene Structure 5114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009756.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

aggcgttccaaagaggacgtccgcactttcgttaaagtgcggacggcgctgctgcagctcggctcggggcgcgacggagcggcggaggttgccagaaggacgccaggggtctggcggagaggtctgcagtcgggggagtcgccggcgacgtccttgcagcgctgcccagaaaacctgcagttgcaggtcgggttgctgctcagaacctgcaactcggacctcctccgacctcgaacgctgcccaaacccgtccgccaagcctccggcctccgtctgccaagccccgagccgccgtcgccgcctggaacgcagctgctgcgtcgccgtccgcactttagcaaaatctcaagacatcacagggcagagagtggtggcatatcacattgtgaagagaatttgaatcggaggcttattgtgttcctttcagtcacgacaagcttgtttccaaatttatcttcttctgcgaaaacaaagagtaaaagtccatttgatgaaagacgcttgctggagcaaaacaggcgtatacagaaagaaaataatgcacctgaagagtttccaagtttcattagagaaggttttcaggttaaggtagtaacgccagaagactacacaacacgtgaatcaggacttatatatcgggattttgcagttggtgagggtgattgcccacaggctggtcagcaggtgatgttccactatgttggctacaatgagtcaggccgtcgcatagacagcagctacaatcaaggttctcctgccagaatacgcatgggaacaaatgcattggtcccaggatttgaagaaggaattcgtgacatgaaacctgggggaaaaagaagaataatcattccaccagaacttggaccaccggtaggaccttccacctttttcagctcaaaacagtttgaagtttttgatgtggaactgctaagcattcaaaactgtgtaaggaggactatagctgctttttactctgattttgtctgcgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0016491 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0019684 GO:0022607 GO:0031977 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0055114 GO:0061077 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

330

Amino Acids

37.08

Weight (kDa)

9.93

Isoelectric Point (pI)

71.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60370 AT3G60370
fragaria_vesca	FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860
malus_domestica	MD02G1216500.v1.1
prunus_persica	Prupe.2G127600_v2.0.a1
pyrus_communis	pycom02g17810
rosa_chinensis	RchiOBHm_Chr1g0347401
rosa_laevigata	RLG00000028753
rosa_multiflora	Rmu_sc0009756.1_g000001 Rmu_sc0017677.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307850
rosa_rugosa	Rorug01G0186400 Rorug01G0186500
rosa_samantha	Rh1AG204100 Rh1BG169800 Rh1CG189200 Rh1DG200200
rosa_wichuraiana	Rw1G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	673
AatII	GACGTC	2 cut(s)	21, 152
Acc36I	ACCTGC	4 cut(s)	175, 183, 215, 673
AccB7I	CCANNNNNTGG	2 cut(s)	674, 860
AccBSI	CCGCTC	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	523
AccII	CGCG	1 cut(s)	72
AciI	CCGC	9 cut(s)	22, 40, 80, 83, 115, 253, 290, 299, 329
AcsI	RAATTY	3 cut(s)	394, 448, 807
AcuI	CTGAAG	1 cut(s)	567
AcvI	CACGTG	1 cut(s)	617
AcyI	GRCGYC	3 cut(s)	18, 101, 149
AdeI	CACNNNGTG	1 cut(s)	386
AfeI	AGCGCT	1 cut(s)	161
AfiI	CCNNNNNNNGG	3 cut(s)	674, 860, 872
AflIII	ACRYGT	1 cut(s)	614
AgeI	ACCGGT	1 cut(s)	868
AgsI	TTSAA	4 cut(s)	400, 800, 908, 938
AjnI	CCWGG	4 cut(s)	103, 301, 790, 823
AjuI	GAANNNNNNNTTGG	2 cut(s)	439, 471
AluBI	AGCT	6 cut(s)	58, 313, 438, 738, 894, 962
AluI	AGCT	6 cut(s)	58, 313, 438, 738, 894, 962
AlwNI	CAGNNNCTG	2 cut(s)	207, 316
Ama87I	CYCGRG	2 cut(s)	64, 284
Aor51HI	AGCGCT	1 cut(s)	161
AoxI	GGCC	2 cut(s)	265, 718
ApoI	RAATTY	3 cut(s)	394, 448, 807
ArsI	GACNNNNNNTTYG	1 cut(s)	35
AsiGI	ACCGGT	1 cut(s)	868
Asp700I	GAANNNNTTC	3 cut(s)	552, 576, 807
AspLEI	GCGC	3 cut(s)	49, 72, 162
AspS9I	GGNCC	4 cut(s)	217, 787, 863, 875
AsuHPI	GGTGA	3 cut(s)	665, 671, 697
AvaI	CYCGRG	2 cut(s)	64, 284
AvaII	GGWCC	4 cut(s)	217, 787, 863, 875
BbrPI	CACGTG	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	609
BceAI	ACGGC	4 cut(s)	60, 277, 309, 705
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	4 cut(s)	105, 303, 792, 825
BfmI	CTRYAG	4 cut(s)	53, 125, 176, 957
BfoI	RGCGCY	2 cut(s)	50, 163
BfuAI	ACCTGC	4 cut(s)	175, 183, 215, 673
BlpI	GCTNAGC	1 cut(s)	929
Bme1390I	CCNGG	4 cut(s)	105, 303, 792, 825
Bme18I	GGWCC	4 cut(s)	217, 787, 863, 875
BmeT110I	CYCGRG	2 cut(s)	64, 284
BmgT120I	GGNCC	4 cut(s)	217, 787, 863, 875
BmiI	GGNNCC	1 cut(s)	789
BmrFI	CCNGG	4 cut(s)	105, 303, 792, 825
BpiI	GAAGAC	1 cut(s)	609
BpmI	CTGGAG	1 cut(s)	527
Bpu1102I	GCTNAGC	1 cut(s)	929
BpuEI	CTTGAG	1 cut(s)	331
BsaAI	YACGTR	1 cut(s)	617
BsaHI	GRCGYC	3 cut(s)	18, 101, 149
BsaJI	CCNNGG	3 cut(s)	104, 790, 824
BsaWI	WCCGGW	1 cut(s)	868
Bsc4I	CCNNNNNNNGG	3 cut(s)	674, 860, 872
Bse118I	RCCGGY	2 cut(s)	142, 868
BseBI	CCWGG	4 cut(s)	105, 303, 792, 825
BseDI	CCNNGG	3 cut(s)	104, 790, 824
BseLI	CCNNNNNNNGG	3 cut(s)	674, 860, 872
BseMII	CTCAG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	212
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	267, 720
BshTI	ACCGGT	1 cut(s)	868
BsiHKCI	CYCGRG	2 cut(s)	64, 284
BsiSI	CCGG	3 cut(s)	143, 264, 869
BslFI	GGGAC	1 cut(s)	773
BslI	CCNNNNNNNGG	3 cut(s)	674, 860, 872
BsmFI	GGGAC	1 cut(s)	773
BsmI	GAATGC	1 cut(s)	933
BsnI	GGCC	2 cut(s)	267, 720
BsoBI	CYCGRG	2 cut(s)	64, 284
Bsp1720I	GCTNAGC	1 cut(s)	929
BspACI	CCGC	9 cut(s)	22, 40, 80, 83, 115, 253, 290, 299, 329
BspANI	GGCC	2 cut(s)	267, 720
BspCNI	CTCAG	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	789
BspMAI	CTGCAG	3 cut(s)	57, 129, 180
BspMI	ACCTGC	4 cut(s)	175, 183, 215, 673
BsrBI	CCGCTC	1 cut(s)	80
BsrFI	RCCGGY	2 cut(s)	142, 868
BssAI	RCCGGY	2 cut(s)	142, 868
BssECI	CCNNGG	3 cut(s)	104, 790, 824
BssNAI	GTATAC	1 cut(s)	524
BssNI	GRCGYC	3 cut(s)	18, 101, 149
Bst1107I	GTATAC	1 cut(s)	524
Bst2UI	CCWGG	4 cut(s)	105, 303, 792, 825
Bst4CI	ACNGT	2 cut(s)	903, 944
Bst6I	CTCTTC	2 cut(s)	384, 543
BstACI	GRCGYC	3 cut(s)	18, 101, 149
BstAPI	GCANNNNNTGC	1 cut(s)	316
BstBAI	YACGTR	1 cut(s)	617
BstC8I	GCNNGC	2 cut(s)	144, 503
BstDEI	CTNAG	2 cut(s)	200, 929
BstFNI	CGCG	1 cut(s)	72
BstH2I	RGCGCY	2 cut(s)	50, 163
BstHHI	GCGC	3 cut(s)	49, 72, 162
BstNI	CCWGG	4 cut(s)	105, 303, 792, 825
BstSCI	CCNGG	4 cut(s)	103, 301, 790, 823
BstSFI	CTRYAG	4 cut(s)	53, 125, 176, 957
BstUI	CGCG	1 cut(s)	72
BstV2I	GAAGAC	1 cut(s)	609
BstXI	CCANNNNNNTGG	2 cut(s)	111, 701
BstZ17I	GTATAC	1 cut(s)	524
BsuRI	GGCC	2 cut(s)	267, 720
BveI	ACCTGC	4 cut(s)	175, 183, 215, 673
Cac8I	GCNNGC	2 cut(s)	144, 503
CaiI	CAGNNNCTG	2 cut(s)	207, 316
CfoI	GCGC	3 cut(s)	49, 72, 162
Cfr10I	RCCGGY	2 cut(s)	142, 868
Cfr13I	GGNCC	4 cut(s)	217, 787, 863, 875
CseI	GACGC	3 cut(s)	109, 308, 507
CspAI	ACCGGT	1 cut(s)	868
CviAII	CATG	2 cut(s)	769, 817
DdeI	CTNAG	2 cut(s)	200, 929
DraIII	CACNNNGTG	1 cut(s)	386
Eam1104I	CTCTTC	2 cut(s)	384, 543
EarI	CTCTTC	2 cut(s)	384, 543
EciI	GGCGGA	3 cut(s)	98, 130, 242
Eco47I	GGWCC	4 cut(s)	217, 787, 863, 875
Eco47III	AGCGCT	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	567
Eco72I	CACGTG	1 cut(s)	617
Eco88I	CYCGRG	2 cut(s)	64, 284
EcoO109I	RGGNCCY	1 cut(s)	875
EcoRI	GAATTC	1 cut(s)	807
EcoRII	CCWGG	4 cut(s)	103, 301, 790, 823
EcoT22I	ATGCAT	1 cut(s)	784
FaeI	CATG	2 cut(s)	772, 820
FaiI	YATR	9 cut(s)	377, 524, 632, 634, 699, 728, 770, 818, 959
FaqI	GGGAC	1 cut(s)	773
FatI	CATG	2 cut(s)	768, 816
FblI	GTMKAC	1 cut(s)	523
GlaI	GCGC	3 cut(s)	48, 71, 161
GsuI	CTGGAG	1 cut(s)	527
HaeII	RGCGCY	2 cut(s)	50, 163
HaeIII	GGCC	2 cut(s)	267, 720
HapII	CCGG	3 cut(s)	143, 264, 869
HgaI	GACGC	3 cut(s)	109, 308, 507
HhaI	GCGC	3 cut(s)	49, 72, 162
Hin1I	GRCGYC	3 cut(s)	18, 101, 149
Hin1II	CATG	2 cut(s)	772, 820
Hin6I	GCGC	3 cut(s)	47, 70, 160
HinP1I	GCGC	3 cut(s)	47, 70, 160
HindIII	AAGCTT	1 cut(s)	436
HinfI	GANTC	4 cut(s)	137, 400, 620, 713
HpaII	CCGG	3 cut(s)	143, 264, 869
HphI	GGTGA	3 cut(s)	665, 671, 697
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188I	TCNGA	5 cut(s)	203, 217, 227, 405, 976
Hpy188III	TCNNGA	5 cut(s)	348, 430, 624, 638, 812
Hpy8I	GTNNAC	1 cut(s)	524
Hpy99I	CGWCG	5 cut(s)	77, 151, 298, 324, 726
HpyAV	CCTTC	4 cut(s)	90, 566, 797, 888
HpyCH4III	ACNGT	2 cut(s)	903, 944
HpyCH4IV	ACGT	3 cut(s)	18, 149, 616
HpyCH4V	TGCA	9 cut(s)	55, 127, 157, 178, 184, 210, 542, 647, 782
HpyF3I	CTNAG	2 cut(s)	200, 929
HpySE526I	ACGT	3 cut(s)	18, 149, 616
Hsp92I	GRCGYC	3 cut(s)	18, 101, 149
Hsp92II	CATG	2 cut(s)	772, 820
HspAI	GCGC	3 cut(s)	47, 70, 160
KroI	GCCGGC	1 cut(s)	142
KroNI	GCCGGC	1 cut(s)	144
LmnI	GCTCC	2 cut(s)	77, 508
MaeII	ACGT	3 cut(s)	18, 149, 616
MaeIII	GTNAC	3 cut(s)	427, 592, 812
MbiI	CCGCTC	1 cut(s)	80
MboII	GAAGA	7 cut(s)	401, 447, 450, 560, 614, 812, 849
MluCI	AATT	3 cut(s)	394, 448, 807
MlyI	GAGTC	2 cut(s)	146, 722
MmeI	TCCRAC	1 cut(s)	250
Mph1103I	ATGCAT	1 cut(s)	784
MreI	CGCCGGCG	1 cut(s)	142
MroNI	GCCGGC	1 cut(s)	142
MroXI	GAANNNNTTC	3 cut(s)	552, 576, 807
MseI	TTAA	2 cut(s)	33, 585
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	3 cut(s)	143, 264, 869
MspR9I	CCNGG	4 cut(s)	105, 303, 792, 825
Mva1269I	GAATGC	1 cut(s)	933
MvaI	CCWGG	4 cut(s)	105, 303, 792, 825
MvnI	CGCG	1 cut(s)	72
NaeI	GCCGGC	1 cut(s)	144
NgoMIV	GCCGGC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	772, 820
NlaIV	GGNNCC	1 cut(s)	789
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	2 cut(s)	427, 812
NsiI	ATGCAT	1 cut(s)	784
PaqCI	CACCTGC	1 cut(s)	673
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PctI	GAATGC	1 cut(s)	933
PdiI	GCCGGC	1 cut(s)	144
PdmI	GAANNNNTTC	3 cut(s)	552, 576, 807
PfeI	GAWTC	2 cut(s)	400, 620
PflMI	CCANNNNNTGG	2 cut(s)	674, 860
PinAI	ACCGGT	1 cut(s)	868
PleI	GAGTC	2 cut(s)	145, 721
PmaCI	CACGTG	1 cut(s)	617
PmlI	CACGTG	1 cut(s)	617
PpsI	GAGTC	2 cut(s)	145, 721
Ppu21I	YACGTR	1 cut(s)	617
PpuMI	RGGWCCY	1 cut(s)	875
Psp5II	RGGWCCY	1 cut(s)	875
Psp6I	CCWGG	4 cut(s)	103, 301, 790, 823
PspCI	CACGTG	1 cut(s)	617
PspGI	CCWGG	4 cut(s)	103, 301, 790, 823
PspN4I	GGNNCC	1 cut(s)	789
PspPI	GGNCC	4 cut(s)	217, 787, 863, 875
PspPPI	RGGWCCY	1 cut(s)	875
PstI	CTGCAG	3 cut(s)	57, 129, 180
PstNI	CAGNNNCTG	2 cut(s)	207, 316
PvuII	CAGCTG	1 cut(s)	313
SaqAI	TTAA	2 cut(s)	33, 585
Sau96I	GGNCC	4 cut(s)	217, 787, 863, 875
SchI	GAGTC	2 cut(s)	146, 722
ScrFI	CCNGG	4 cut(s)	105, 303, 792, 825
SfcI	CTRYAG	4 cut(s)	53, 125, 176, 957
SgrAI	CRCCGGYG	1 cut(s)	142
SinI	GGWCC	4 cut(s)	217, 787, 863, 875
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	3 cut(s)	394, 448, 807
SsiI	CCGC	9 cut(s)	22, 40, 80, 83, 115, 253, 290, 299, 329
StyD4I	CCNGG	4 cut(s)	103, 301, 790, 823
TaaI	ACNGT	2 cut(s)	903, 944
TaiI	ACGT	3 cut(s)	21, 152, 619
TaqI	TCGA	1 cut(s)	232
TasI	AATT	3 cut(s)	394, 448, 807
TauI	GCSGC	3 cut(s)	83, 292, 301
TfiI	GAWTC	2 cut(s)	400, 620
Tru1I	TTAA	2 cut(s)	33, 585
Tru9I	TTAA	2 cut(s)	33, 585
TseFI	GTSAC	2 cut(s)	427, 812
Tsp45I	GTSAC	2 cut(s)	427, 812
TspDTI	ATGAA	3 cut(s)	507, 553, 833
TspGWI	ACGGA	2 cut(s)	90, 260
Van91I	CCANNNNNTGG	2 cut(s)	674, 860
VpaK11BI	GGWCC	4 cut(s)	217, 787, 863, 875
XapI	RAATTY	3 cut(s)	394, 448, 807
XcmI	CCANNNNNNNNNTGG	1 cut(s)	766
XmiI	GTMKAC	1 cut(s)	523
XmnI	GAANNNNTTC	3 cut(s)	552, 576, 807
ZraI	GACGTC	2 cut(s)	19, 150
Zsp2I	ATGCAT	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.