Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009325

Physical Location & Seq

Genomic Coordinates Reverse (-)

25810723 .. 25811726

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0186500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAAGCGCATCCAGAAGGGCCCCGTCCGCGGCATCTCCCTCAAGCTCCAAGAGGAGGAGCGCGAGCGCCGCATGGACTTTGTCCCCGACGAGTCCGCCATGAAGACCGACGAGATCGCCGTCGACAAGGAGACCGTCGATCAAGAAGACTGCGCCGATCGGGTACGGCCCCAGGAGGTACTAGGAAATGGTGGCCGGTTGCCGGTTTTTCGCCGCCGCAACGGTTTTGATGTTATAGCTGAACCAGTGAATGAGACATCATCAGCAAGTGCTGGAGGGTCAAGGAAGAGGTACAAGTTGCCTGCAAGGAGAATTAAGCCAAGAAAGTCACCCAGACTTGCTGCTGCATCTGTTCAACCTCAAAAACCGAAACTGCAGAGGGCTTTGTGGAAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0016491 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0019684 GO:0022607 GO:0031977 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0055114 GO:0061077 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

132

Amino Acids

15.0

Weight (kDa)

10.3

Isoelectric Point (pI)

63.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	1 - 47	1.6e-16	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60370 AT3G60370
fragaria_vesca	FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860
malus_domestica	MD02G1216500.v1.1
prunus_persica	Prupe.2G127600_v2.0.a1
pyrus_communis	pycom02g17810
rosa_chinensis	RchiOBHm_Chr1g0347401
rosa_laevigata	RLG00000028753
rosa_multiflora	Rmu_sc0009756.1_g000001 Rmu_sc0017677.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307850
rosa_rugosa	Rorug01G0186400 Rorug01G0186500
rosa_samantha	Rh1AG204100 Rh1BG169800 Rh1CG189200 Rh1DG200200
rosa_wichuraiana	Rw1G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	2 cut(s)	30, 63
AciI	CCGC	6 cut(s)	28, 30, 70, 96, 214, 217
AcoI	YGGCCR	1 cut(s)	193
AfaI	GTAC	3 cut(s)	165, 180, 293
AfiI	CCNNNNNNNGG	3 cut(s)	29, 55, 202
AgsI	TTSAA	1 cut(s)	356
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	2 cut(s)	46, 239
AluI	AGCT	2 cut(s)	46, 239
Alw26I	GTCTC	2 cut(s)	125, 248
AoxI	GGCC	3 cut(s)	19, 167, 193
ApaI	GGGCCC	1 cut(s)	23
ApeKI	GCWGC	2 cut(s)	341, 344
AspLEI	GCGC	4 cut(s)	9, 63, 69, 155
AspS9I	GGNCC	3 cut(s)	19, 20, 168
AsuHPI	GGTGA	1 cut(s)	321
BaeGI	GKGCMC	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	23
BbsI	GAAGAC	2 cut(s)	110, 153
BbvI	GCAGC	2 cut(s)	328, 331
BceAI	ACGGC	2 cut(s)	104, 182
BciT130I	CCWGG	1 cut(s)	173
BcoDI	GTCTC	2 cut(s)	125, 248
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	374
BfoI	RGCGCY	1 cut(s)	70
BisI	GCNGC	6 cut(s)	31, 70, 214, 217, 342, 345
BlsI	GCNGC	6 cut(s)	32, 71, 215, 218, 343, 346
Bme1390I	CCNGG	1 cut(s)	173
BmgT120I	GGNCC	3 cut(s)	19, 20, 168
BmiI	GGNNCC	3 cut(s)	21, 22, 170
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	3 cut(s)	18, 42, 356
BpiI	GAAGAC	2 cut(s)	110, 153
BpmI	CTGGAG	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	28, 171
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 55, 202
Bse118I	RCCGGY	2 cut(s)	195, 202
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	28, 171
BseGI	GGATG	1 cut(s)	9
BseLI	CCNNNNNNNGG	3 cut(s)	29, 55, 202
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	2 cut(s)	68, 71
BseSI	GKGCMC	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	328, 331
Bsh1236I	CGCG	2 cut(s)	30, 63
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	3 cut(s)	21, 169, 195
BsiEI	CGRYCG	1 cut(s)	160
BsiSI	CCGG	2 cut(s)	196, 203
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	3 cut(s)	29, 55, 202
BsmAI	GTCTC	2 cut(s)	125, 248
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	3 cut(s)	21, 169, 195
Bso31I	GGTCTC	1 cut(s)	125
Bsp120I	GGGCCC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	3 cut(s)	114, 139, 157
BspACI	CCGC	6 cut(s)	28, 30, 70, 96, 214, 217
BspANI	GGCC	3 cut(s)	21, 169, 195
BspFNI	CGCG	2 cut(s)	30, 63
BspLI	GGNNCC	3 cut(s)	21, 22, 170
BspMAI	CTGCAG	1 cut(s)	378
BspTNI	GGTCTC	1 cut(s)	125
BsrFI	RCCGGY	2 cut(s)	195, 202
BsrI	ACTGG	1 cut(s)	245
BssAI	RCCGGY	2 cut(s)	195, 202
BssECI	CCNNGG	2 cut(s)	28, 171
BssMI	GATC	3 cut(s)	114, 139, 157
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	2 cut(s)	136, 224
Bst6I	CTCTTC	1 cut(s)	281
BstC8I	GCNNGC	2 cut(s)	65, 303
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	9
BstFNI	CGCG	2 cut(s)	30, 63
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	4 cut(s)	9, 63, 69, 155
BstKTI	GATC	3 cut(s)	117, 142, 160
BstMAI	GTCTC	2 cut(s)	125, 248
BstMBI	GATC	3 cut(s)	114, 139, 157
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 69
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstSFI	CTRYAG	1 cut(s)	374
BstSLI	GKGCMC	1 cut(s)	23
BstUI	CGCG	2 cut(s)	30, 63
BstV1I	GCAGC	2 cut(s)	328, 331
BstV2I	GAAGAC	2 cut(s)	110, 153
BsuRI	GGCC	3 cut(s)	21, 169, 195
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	9
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	2 cut(s)	65, 303
CfoI	GCGC	4 cut(s)	9, 63, 69, 155
Cfr10I	RCCGGY	2 cut(s)	195, 202
Cfr13I	GGNCC	3 cut(s)	19, 20, 168
Cfr42I	CCGCGG	1 cut(s)	31
Csp6I	GTAC	3 cut(s)	164, 179, 292
CviAII	CATG	2 cut(s)	73, 100
CviJI	RGCY	7 cut(s)	21, 46, 169, 195, 239, 319, 383
CviKI_1	RGCY	7 cut(s)	21, 46, 169, 195, 239, 319, 383
CviQI	GTAC	3 cut(s)	164, 179, 292
DpnI	GATC	3 cut(s)	116, 141, 159
DpnII	GATC	3 cut(s)	114, 139, 157
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
EciI	GGCGGA	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	125
EcoO109I	RGGNCCY	2 cut(s)	19, 20
EcoRII	CCWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	23
FaeI	CATG	2 cut(s)	76, 103
FaiI	YATR	3 cut(s)	74, 101, 236
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	2 cut(s)	72, 99
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	6 cut(s)	31, 70, 214, 217, 342, 345
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	6 cut(s)	31, 70, 214, 217, 342, 345
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	4 cut(s)	8, 62, 68, 154
GluI	GCNGC	6 cut(s)	31, 70, 214, 217, 342, 345
GsuI	CTGGAG	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	3 cut(s)	21, 169, 195
HapII	CCGG	2 cut(s)	196, 203
HhaI	GCGC	4 cut(s)	9, 63, 69, 155
Hin1II	CATG	2 cut(s)	76, 103
Hin6I	GCGC	4 cut(s)	7, 61, 67, 153
HinP1I	GCGC	4 cut(s)	7, 61, 67, 153
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	2 cut(s)	196, 203
HphI	GGTGA	1 cut(s)	321
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188III	TCNNGA	2 cut(s)	13, 143
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	4 cut(s)	92, 113, 125, 140
HpyAV	CCTTC	1 cut(s)	10
HpyCH4III	ACNGT	2 cut(s)	136, 224
HpyCH4V	TGCA	3 cut(s)	305, 347, 376
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 69
Hsp92II	CATG	2 cut(s)	76, 103
HspAI	GCGC	4 cut(s)	7, 61, 67, 153
KspI	CCGCGG	1 cut(s)	31
Kzo9I	GATC	3 cut(s)	114, 139, 157
LmnI	GCTCC	2 cut(s)	51, 58
LpnPI	CCDG	9 cut(s)	26, 158, 185, 209, 216, 258, 258, 315, 346
Lsp1109I	GCAGC	2 cut(s)	328, 331
LweI	GCATC	3 cut(s)	18, 42, 356
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	327
MalI	GATC	3 cut(s)	116, 141, 159
MboI	GATC	3 cut(s)	114, 139, 157
MboII	GAAGA	3 cut(s)	115, 158, 298
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	8 cut(s)	46, 49, 50, 169, 269, 282, 369, 372
MseI	TTAA	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	30
MspI	CCGG	2 cut(s)	196, 203
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	2 cut(s)	30, 63
MwoI	GCNNNNNNNGC	2 cut(s)	27, 69
NdeII	GATC	3 cut(s)	114, 139, 157
NlaIII	CATG	2 cut(s)	76, 103
NlaIV	GGNNCC	3 cut(s)	21, 22, 170
NmuCI	GTSAC	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PflFI	GACNNNGTC	1 cut(s)	80
PkrI	GCNGC	6 cut(s)	32, 71, 215, 218, 343, 346
Ple19I	CGATCG	1 cut(s)	160
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	3 cut(s)	21, 22, 170
PspOMI	GGGCCC	1 cut(s)	19
PspPI	GGNCC	3 cut(s)	19, 20, 168
PstI	CTGCAG	1 cut(s)	378
PsyI	GACNNNGTC	1 cut(s)	80
PvuI	CGATCG	1 cut(s)	160
RsaI	GTAC	3 cut(s)	165, 180, 293
RsaNI	GTAC	3 cut(s)	164, 179, 292
SacII	CCGCGG	1 cut(s)	31
SalI	GTCGAC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	6 cut(s)	31, 70, 214, 217, 342, 345
Sau3AI	GATC	3 cut(s)	114, 139, 157
Sau96I	GGNCC	3 cut(s)	19, 20, 168
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	5 cut(s)	48, 180, 241, 293, 361
SfaNI	GCATC	3 cut(s)	18, 42, 356
SfcI	CTRYAG	1 cut(s)	374
Sfr303I	CCGCGG	1 cut(s)	31
SgrBI	CCGCGG	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	1 cut(s)	312
SsiI	CCGC	6 cut(s)	28, 30, 70, 96, 214, 217
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	136, 224
TaqI	TCGA	2 cut(s)	123, 138
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	1 cut(s)	312
TauI	GCSGC	4 cut(s)	33, 72, 216, 219
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	327
TseI	GCWGC	2 cut(s)	341, 344
Tsp45I	GTSAC	1 cut(s)	327
TspDTI	ATGAA	2 cut(s)	17, 116
TspRI	CASTG	1 cut(s)	252
Tth111I	GACNNNGTC	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.