Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017677.1

Orthogroup ID

OG0009325

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2084

Gene Structure 2084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017677.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atctcaagacatcacagggcagagagtggtggcatatcacattgtgaagagaatttgaatcggaggcttattgtgttcctttcagtcacgacaagcttgtttccaaatttatcttcttctgcgaaaacaaagagtaaaagtccatttgatgaaagacgcttgctggagcaaaacaggcgtatacagaaagaaaataatgcacctgaagagtttccaagtttcattagagaaggttttcaggttaaggtagtaacgccggaagactacacaacacgtgaatcaggacttatatatcgggattttgcagttggtgagggtgattgcccacaggctggtcagcaggtgatgttccactatgttggctacaatgagtcaggccgtcgcatagacagcagctacaatcaaggttctcctgccagaatacgcatgggaacaaatgcattggtcccaggatttgaagaaggaattcgtgacatgaaacctgggggaaaaagaagaataatcattccaccagaacttggaccaccggtcagtttctcaaatctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0016491 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0019684 GO:0022607 GO:0031977 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0055114 GO:0061077 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

182

Amino Acids

20.5

Weight (kDa)

8.98

Isoelectric Point (pI)

60.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60370 AT3G60370
fragaria_vesca	FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860
malus_domestica	MD02G1216500.v1.1
prunus_persica	Prupe.2G127600_v2.0.a1
pyrus_communis	pycom02g17810
rosa_chinensis	RchiOBHm_Chr1g0347401
rosa_laevigata	RLG00000028753
rosa_multiflora	Rmu_sc0009756.1_g000001 Rmu_sc0017677.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307850
rosa_rugosa	Rorug01G0186400 Rorug01G0186500
rosa_samantha	Rh1AG204100 Rh1BG169800 Rh1CG189200 Rh1DG200200
rosa_wichuraiana	Rw1G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	331
Acc36I	ACCTGC	1 cut(s)	331
AccB7I	CCANNNNNTGG	2 cut(s)	332, 518
AccI	GTMKAC	1 cut(s)	181
AcsI	RAATTY	3 cut(s)	52, 106, 465
AcuI	CTGAAG	1 cut(s)	225
AcvI	CACGTG	1 cut(s)	275
AdeI	CACNNNGTG	1 cut(s)	44
AfiI	CCNNNNNNNGG	2 cut(s)	332, 518
AflIII	ACRYGT	1 cut(s)	272
AgeI	ACCGGT	1 cut(s)	526
AgsI	TTSAA	2 cut(s)	58, 458
AhdI	GACNNNNNGTC	1 cut(s)	527
AjnI	CCWGG	2 cut(s)	448, 481
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AluBI	AGCT	2 cut(s)	96, 396
AluI	AGCT	2 cut(s)	96, 396
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	1 cut(s)	393
ApoI	RAATTY	3 cut(s)	52, 106, 465
AsiGI	ACCGGT	1 cut(s)	526
Asp700I	GAANNNNTTC	3 cut(s)	210, 234, 465
AspS9I	GGNCC	2 cut(s)	445, 521
AsuHPI	GGTGA	3 cut(s)	323, 329, 355
AvaII	GGWCC	2 cut(s)	445, 521
BbrPI	CACGTG	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	405
BceAI	ACGGC	1 cut(s)	363
BciT130I	CCWGG	2 cut(s)	450, 483
BfuAI	ACCTGC	1 cut(s)	331
BisI	GCNGC	1 cut(s)	394
BlsI	GCNGC	1 cut(s)	395
Bme1390I	CCNGG	2 cut(s)	450, 483
Bme18I	GGWCC	2 cut(s)	445, 521
BmeRI	GACNNNNNGTC	1 cut(s)	527
BmgT120I	GGNCC	2 cut(s)	445, 521
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	2 cut(s)	450, 483
BpiI	GAAGAC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	185
BsaAI	YACGTR	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	448, 482
BsaWI	WCCGGW	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 518
Bse118I	RCCGGY	1 cut(s)	526
BseBI	CCWGG	2 cut(s)	450, 483
BseDI	CCNNGG	2 cut(s)	448, 482
BseLI	CCNNNNNNNGG	2 cut(s)	332, 518
BseXI	GCAGC	1 cut(s)	405
BshFI	GGCC	1 cut(s)	378
BshTI	ACCGGT	1 cut(s)	526
BsiSI	CCGG	2 cut(s)	257, 527
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	2 cut(s)	332, 518
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	1 cut(s)	378
BspANI	GGCC	1 cut(s)	378
BspLI	GGNNCC	1 cut(s)	447
BspMI	ACCTGC	1 cut(s)	331
BsrFI	RCCGGY	1 cut(s)	526
BssAI	RCCGGY	1 cut(s)	526
BssECI	CCNNGG	2 cut(s)	448, 482
BssNAI	GTATAC	1 cut(s)	182
Bst1107I	GTATAC	1 cut(s)	182
Bst2UI	CCWGG	2 cut(s)	450, 483
Bst6I	CTCTTC	2 cut(s)	42, 201
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 390
BstNI	CCWGG	2 cut(s)	450, 483
BstSCI	CCNGG	2 cut(s)	448, 481
BstV1I	GCAGC	1 cut(s)	405
BstV2I	GAAGAC	1 cut(s)	267
BstXI	CCANNNNNNTGG	1 cut(s)	359
BstZ17I	GTATAC	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	378
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	161
Cfr10I	RCCGGY	1 cut(s)	526
Cfr13I	GGNCC	2 cut(s)	445, 521
CseI	GACGC	1 cut(s)	165
CspAI	ACCGGT	1 cut(s)	526
CviAII	CATG	2 cut(s)	427, 475
CviJI	RGCY	6 cut(s)	67, 96, 332, 363, 378, 396
CviKI_1	RGCY	6 cut(s)	67, 96, 332, 363, 378, 396
DraIII	CACNNNGTG	1 cut(s)	44
DriI	GACNNNNNGTC	1 cut(s)	527
Eam1104I	CTCTTC	2 cut(s)	42, 201
Eam1105I	GACNNNNNGTC	1 cut(s)	527
EarI	CTCTTC	2 cut(s)	42, 201
Eco47I	GGWCC	2 cut(s)	445, 521
Eco57I	CTGAAG	1 cut(s)	225
Eco72I	CACGTG	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	465
EcoRII	CCWGG	2 cut(s)	448, 481
EcoT22I	ATGCAT	1 cut(s)	442
FaeI	CATG	2 cut(s)	430, 478
FaiI	YATR	8 cut(s)	35, 182, 290, 292, 357, 386, 428, 476
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	2 cut(s)	426, 474
FblI	GTMKAC	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	394
Fsp4HI	GCNGC	1 cut(s)	394
GluI	GCNGC	1 cut(s)	394
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	2 cut(s)	257, 527
HgaI	GACGC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	430, 478
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	3 cut(s)	58, 278, 371
HpaII	CCGG	2 cut(s)	257, 527
HphI	GGTGA	3 cut(s)	323, 329, 355
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	5 cut(s)	6, 88, 282, 296, 470
Hpy8I	GTNNAC	1 cut(s)	182
Hpy99I	CGWCG	1 cut(s)	384
HpyAV	CCTTC	2 cut(s)	224, 455
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	3 cut(s)	200, 305, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 390
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	2 cut(s)	430, 478
LmnI	GCTCC	1 cut(s)	166
Lsp1109I	GCAGC	1 cut(s)	405
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	3 cut(s)	85, 250, 470
MboII	GAAGA	7 cut(s)	59, 105, 108, 218, 272, 470, 507
MluCI	AATT	3 cut(s)	52, 106, 465
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	2 cut(s)	57, 307
Mph1103I	ATGCAT	1 cut(s)	442
MroXI	GAANNNNTTC	3 cut(s)	210, 234, 465
MseI	TTAA	1 cut(s)	243
MspI	CCGG	2 cut(s)	257, 527
MspR9I	CCNGG	2 cut(s)	450, 483
MvaI	CCWGG	2 cut(s)	450, 483
MwoI	GCNNNNNNNGC	2 cut(s)	175, 390
NlaIII	CATG	2 cut(s)	430, 478
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	2 cut(s)	85, 470
NsiI	ATGCAT	1 cut(s)	442
PaqCI	CACCTGC	1 cut(s)	331
PdmI	GAANNNNTTC	3 cut(s)	210, 234, 465
PfeI	GAWTC	2 cut(s)	58, 278
PflMI	CCANNNNNTGG	2 cut(s)	332, 518
PinAI	ACCGGT	1 cut(s)	526
PkrI	GCNGC	1 cut(s)	395
PleI	GAGTC	1 cut(s)	379
PmaCI	CACGTG	1 cut(s)	275
PmlI	CACGTG	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	379
Ppu21I	YACGTR	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	448, 481
PspCI	CACGTG	1 cut(s)	275
PspGI	CCWGG	2 cut(s)	448, 481
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	2 cut(s)	445, 521
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	394
Sau96I	GGNCC	2 cut(s)	445, 521
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	2 cut(s)	450, 483
SinI	GGWCC	2 cut(s)	445, 521
SmlI	CTYRAG	1 cut(s)	4
SmoI	CTYRAG	1 cut(s)	4
Sse9I	AATT	3 cut(s)	52, 106, 465
StyD4I	CCNGG	2 cut(s)	448, 481
TaiI	ACGT	1 cut(s)	277
TasI	AATT	3 cut(s)	52, 106, 465
TfiI	GAWTC	2 cut(s)	58, 278
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseFI	GTSAC	2 cut(s)	85, 470
TseI	GCWGC	1 cut(s)	393
Tsp45I	GTSAC	2 cut(s)	85, 470
TspDTI	ATGAA	3 cut(s)	165, 211, 491
Van91I	CCANNNNNTGG	2 cut(s)	332, 518
VpaK11BI	GGWCC	2 cut(s)	445, 521
XapI	RAATTY	3 cut(s)	52, 106, 465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	181
XmnI	GAANNNNTTC	3 cut(s)	210, 234, 465
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.