Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009325

Physical Location & Seq

Genomic Coordinates Reverse (-)

27446117 .. 27450148

Gene Structure 4032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028753

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCTGATGGTTCCCTCGTCTCTCTCGTATAAACCCACACCTCCCACACCAAGCATTCATTTCAGTCACAACAAACAAATAATCCAATGCTGTTCAAGTCAGAAATCGAGACATCAAAGGGCAGAGAGTGGTGGCGTATCACATTGTGAAGAGAATTTGAATCGGAGGCTTATTGTGTTCCTTTCAGTCACAACAAGCTTGTTTCCAAATTTATCTTCTTCTGCAAAAACAAAGAGTAAAAGTCCATTTGATGAAAGACGCTTGCTGGAGCAAAACAAGCGTATACAGAAAGAAAATAATGCACCTGAAGAGTTTCCAAGTTTCATTAGAGAAGGTTTTCAGGTTAAGGTAGTAACGCCGGGAAACTACACAACACGTGACTCAGGACTTATATATCGGGATTTTGCAGTTGGTGAGGGTGATTGCCCACAGGCTGGTCAGCAGGTGATGTTCCATTATGTTGGCTACAATGAATCAGGCCGTCGCATAGACAGCAGCTACAATCAAGGTTCTCCTGCCAGAATACGCATGGGAACAAATGCATTGGTCCCAGGATTTGAAGAAGGAATTCGTGACATGAAACCTGGTGGAAAAAGAAGAATAATCATTCCACCAGAACTTGGACCACCGGTAGGACCTTCCACCTTTTTCAGCTCAAAACAGTTTGAAGTTTTTGATGTGGAACTGCTGAGCATTCAAAATTGTGTGAGGAGGACTATAGCTGCTTTTTACTCTGATTTTGTCTGCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0016491 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0019684 GO:0022607 GO:0031977 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0055114 GO:0061077 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

251

Amino Acids

28.06

Weight (kDa)

9.04

Isoelectric Point (pI)

58.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	143 - 208	1.9e-17	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60370 AT3G60370
fragaria_vesca	FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860
malus_domestica	MD02G1216500.v1.1
prunus_persica	Prupe.2G127600_v2.0.a1
pyrus_communis	pycom02g17810
rosa_chinensis	RchiOBHm_Chr1g0347401
rosa_laevigata	RLG00000028753
rosa_multiflora	Rmu_sc0009756.1_g000001 Rmu_sc0017677.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307850
rosa_rugosa	Rorug01G0186400 Rorug01G0186500
rosa_samantha	Rh1AG204100 Rh1BG169800 Rh1CG189200 Rh1DG200200
rosa_wichuraiana	Rw1G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	433
Acc36I	ACCTGC	1 cut(s)	433
AccB7I	CCANNNNNTGG	2 cut(s)	434, 620
AccI	GTMKAC	1 cut(s)	283
AcsI	RAATTY	3 cut(s)	154, 208, 567
AcuI	CTGAAG	1 cut(s)	327
AcvI	CACGTG	1 cut(s)	377
AdeI	CACNNNGTG	1 cut(s)	146
AfiI	CCNNNNNNNGG	3 cut(s)	434, 620, 632
AflIII	ACRYGT	1 cut(s)	374
AgeI	ACCGGT	1 cut(s)	628
AgsI	TTSAA	5 cut(s)	96, 160, 560, 668, 698
AjnI	CCWGG	2 cut(s)	550, 583
AjuI	GAANNNNNNNTTGG	2 cut(s)	199, 231
AluBI	AGCT	4 cut(s)	198, 498, 654, 722
AluI	AGCT	4 cut(s)	198, 498, 654, 722
Alw26I	GTCTC	2 cut(s)	24, 103
AoxI	GGCC	1 cut(s)	478
ApeKI	GCWGC	2 cut(s)	495, 722
ApoI	RAATTY	3 cut(s)	154, 208, 567
AsiGI	ACCGGT	1 cut(s)	628
Asp700I	GAANNNNTTC	3 cut(s)	312, 336, 567
AspS9I	GGNCC	3 cut(s)	547, 623, 635
AsuC2I	CCSGG	1 cut(s)	360
AsuHPI	GGTGA	3 cut(s)	425, 431, 457
AvaII	GGWCC	3 cut(s)	547, 623, 635
BbrPI	CACGTG	1 cut(s)	377
BbvI	GCAGC	2 cut(s)	507, 709
BceAI	ACGGC	1 cut(s)	465
BciT130I	CCWGG	2 cut(s)	552, 585
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	2 cut(s)	24, 103
BfmI	CTRYAG	1 cut(s)	717
BfuAI	ACCTGC	1 cut(s)	433
BisI	GCNGC	2 cut(s)	496, 723
BlpI	GCTNAGC	1 cut(s)	689
BlsI	GCNGC	2 cut(s)	497, 724
Bme1390I	CCNGG	3 cut(s)	360, 552, 585
Bme18I	GGWCC	3 cut(s)	547, 623, 635
BmgT120I	GGNCC	3 cut(s)	547, 623, 635
BmiI	GGNNCC	2 cut(s)	12, 549
BmrFI	CCNGG	3 cut(s)	360, 552, 585
BpmI	CTGGAG	1 cut(s)	287
Bpu1102I	GCTNAGC	1 cut(s)	689
BpuMI	CCSGG	1 cut(s)	360
BsaAI	YACGTR	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	550
BsaWI	WCCGGW	1 cut(s)	628
Bsc4I	CCNNNNNNNGG	3 cut(s)	434, 620, 632
Bse118I	RCCGGY	1 cut(s)	628
BseBI	CCWGG	2 cut(s)	552, 585
BseDI	CCNNGG	1 cut(s)	550
BseLI	CCNNNNNNNGG	3 cut(s)	434, 620, 632
BseMII	CTCAG	2 cut(s)	396, 680
BseRI	GAGGAG	1 cut(s)	724
BseXI	GCAGC	2 cut(s)	507, 709
BshFI	GGCC	1 cut(s)	480
BshTI	ACCGGT	1 cut(s)	628
BsiSI	CCGG	2 cut(s)	359, 629
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	3 cut(s)	434, 620, 632
BsmAI	GTCTC	2 cut(s)	24, 103
BsmBI	CGTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	533
BsmI	GAATGC	2 cut(s)	54, 693
BsnI	GGCC	1 cut(s)	480
Bsp1720I	GCTNAGC	1 cut(s)	689
BspANI	GGCC	1 cut(s)	480
BspCNI	CTCAG	2 cut(s)	395, 681
BspLI	GGNNCC	2 cut(s)	12, 549
BspMI	ACCTGC	1 cut(s)	433
BsrFI	RCCGGY	1 cut(s)	628
BssAI	RCCGGY	1 cut(s)	628
BssECI	CCNNGG	1 cut(s)	550
BssNAI	GTATAC	1 cut(s)	284
Bst1107I	GTATAC	1 cut(s)	284
Bst2UI	CCWGG	2 cut(s)	552, 585
Bst4CI	ACNGT	1 cut(s)	663
Bst6I	CTCTTC	2 cut(s)	144, 303
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	382, 689
BstMAI	GTCTC	2 cut(s)	24, 103
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 492
BstNI	CCWGG	2 cut(s)	552, 585
BstSCI	CCNGG	3 cut(s)	358, 550, 583
BstSFI	CTRYAG	1 cut(s)	717
BstV1I	GCAGC	2 cut(s)	507, 709
BstXI	CCANNNNNNTGG	1 cut(s)	461
BstZ17I	GTATAC	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	480
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	263
Cfr10I	RCCGGY	1 cut(s)	628
Cfr13I	GGNCC	3 cut(s)	547, 623, 635
CseI	GACGC	1 cut(s)	267
CsiI	ACCWGGT	1 cut(s)	583
CspAI	ACCGGT	1 cut(s)	628
CviAII	CATG	2 cut(s)	529, 577
CviJI	RGCY	8 cut(s)	169, 198, 434, 465, 480, 498, 654, 722
CviKI_1	RGCY	8 cut(s)	169, 198, 434, 465, 480, 498, 654, 722
DdeI	CTNAG	2 cut(s)	382, 689
DraIII	CACNNNGTG	1 cut(s)	146
Eam1104I	CTCTTC	2 cut(s)	144, 303
EarI	CTCTTC	2 cut(s)	144, 303
Eco47I	GGWCC	3 cut(s)	547, 623, 635
Eco57I	CTGAAG	1 cut(s)	327
Eco72I	CACGTG	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	635
EcoRI	GAATTC	1 cut(s)	567
EcoRII	CCWGG	2 cut(s)	550, 583
EcoT22I	ATGCAT	1 cut(s)	544
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	2 cut(s)	532, 580
FaiI	YATR	9 cut(s)	30, 284, 392, 394, 459, 488, 530, 578, 719
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	2 cut(s)	528, 576
FblI	GTMKAC	1 cut(s)	283
Fnu4HI	GCNGC	2 cut(s)	496, 723
Fsp4HI	GCNGC	2 cut(s)	496, 723
GluI	GCNGC	2 cut(s)	496, 723
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	480
HapII	CCGG	2 cut(s)	359, 629
HgaI	GACGC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	532, 580
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	3 cut(s)	160, 380, 473
HpaII	CCGG	2 cut(s)	359, 629
HphI	GGTGA	3 cut(s)	425, 431, 457
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	3 cut(s)	102, 165, 736
Hpy188III	TCNNGA	4 cut(s)	108, 384, 398, 572
Hpy8I	GTNNAC	1 cut(s)	284
Hpy99I	CGWCG	1 cut(s)	486
HpyAV	CCTTC	3 cut(s)	326, 557, 648
HpyCH4III	ACNGT	1 cut(s)	663
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	4 cut(s)	224, 302, 407, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 492
HpyF3I	CTNAG	2 cut(s)	382, 689
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	2 cut(s)	532, 580
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	2 cut(s)	507, 709
MabI	ACCWGGT	1 cut(s)	583
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	5 cut(s)	65, 187, 352, 377, 572
MboII	GAAGA	6 cut(s)	161, 207, 210, 320, 572, 609
MluCI	AATT	4 cut(s)	154, 208, 567, 700
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	6 cut(s)	25, 51, 159, 409, 702, 705
Mph1103I	ATGCAT	1 cut(s)	544
MroXI	GAANNNNTTC	3 cut(s)	312, 336, 567
MseI	TTAA	1 cut(s)	345
MspI	CCGG	2 cut(s)	359, 629
MspR9I	CCNGG	3 cut(s)	360, 552, 585
Mva1269I	GAATGC	2 cut(s)	54, 693
MvaI	CCWGG	2 cut(s)	552, 585
MwoI	GCNNNNNNNGC	2 cut(s)	277, 492
NciI	CCSGG	1 cut(s)	360
NlaIII	CATG	2 cut(s)	532, 580
NlaIV	GGNNCC	2 cut(s)	12, 549
NmuCI	GTSAC	4 cut(s)	65, 187, 377, 572
NsiI	ATGCAT	1 cut(s)	544
PaqCI	CACCTGC	1 cut(s)	433
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PctI	GAATGC	2 cut(s)	54, 693
PdmI	GAANNNNTTC	3 cut(s)	312, 336, 567
PfeI	GAWTC	2 cut(s)	160, 473
PflMI	CCANNNNNTGG	2 cut(s)	434, 620
PinAI	ACCGGT	1 cut(s)	628
PkrI	GCNGC	2 cut(s)	497, 724
PleI	GAGTC	1 cut(s)	374
PmaCI	CACGTG	1 cut(s)	377
PmlI	CACGTG	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	374
Ppu21I	YACGTR	1 cut(s)	377
PpuMI	RGGWCCY	1 cut(s)	635
Psp5II	RGGWCCY	1 cut(s)	635
Psp6I	CCWGG	2 cut(s)	550, 583
PspCI	CACGTG	1 cut(s)	377
PspGI	CCWGG	2 cut(s)	550, 583
PspN4I	GGNNCC	2 cut(s)	12, 549
PspPI	GGNCC	3 cut(s)	547, 623, 635
PspPPI	RGGWCCY	1 cut(s)	635
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	2 cut(s)	496, 723
Sau96I	GGNCC	3 cut(s)	547, 623, 635
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	3 cut(s)	360, 552, 585
SexAI	ACCWGGT	1 cut(s)	583
SfcI	CTRYAG	1 cut(s)	717
SinI	GGWCC	3 cut(s)	547, 623, 635
Sse9I	AATT	4 cut(s)	154, 208, 567, 700
StyD4I	CCNGG	3 cut(s)	358, 550, 583
TaaI	ACNGT	1 cut(s)	663
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	1 cut(s)	107
TasI	AATT	4 cut(s)	154, 208, 567, 700
TfiI	GAWTC	2 cut(s)	160, 473
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TseFI	GTSAC	4 cut(s)	65, 187, 377, 572
TseI	GCWGC	2 cut(s)	495, 722
Tsp45I	GTSAC	4 cut(s)	65, 187, 377, 572
TspDTI	ATGAA	5 cut(s)	47, 267, 313, 486, 593
Van91I	CCANNNNNTGG	2 cut(s)	434, 620
VpaK11BI	GGWCC	3 cut(s)	547, 623, 635
XapI	RAATTY	3 cut(s)	154, 208, 567
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	283
XmnI	GAANNNNTTC	3 cut(s)	312, 336, 567
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.