Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009325

Physical Location & Seq

Genomic Coordinates Reverse (-)

16061622 .. 16064646

Gene Structure 3025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g17810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCTGATGATTCCCTCTTCTCTCTCTTTTAAACCCTCTCCCTTACTAAGGATTCATTTGAATCAGAATAACCAAATAATACAATGCTGCTCGCGTCATGACTCAAGACATCACAGAACTGGGGAAAGGAGCCATGGCTTATCACATTACAAAGAGAATTTGAGTCGGAGGCTTCTCCTATTTCTTTCGGTCACAACTAGCTTGTTTCCAAATTTATCTTCTTCTGCAAAGACAAAGAGTAAAAGTCCATTTGATGAAAGGCGCTTACTTGAACAAAACAAGCGCATACAGAAAGAAAATAATGCACCCGAAGACTTTCCAAGTTTCATTAGAGAAGGTTTTCAGGTTCAGGTAGTAACGCCACCAAACTACATCACAAGAGACTCAGGGCTTATATTTCGGGATTTTGTAGTTGGTGAAGGTGATTGCCCAGAGGCTGGTCAGCAGGTGATGTTCCACTATATTGGATACAACGAGTCAGGCCGGCGTATTGACAGCAGTTACACGCAGGGTTCTCCGGCCAGAATCCGCATGGGCACAAATGCATTGGTCCCAGGATTTGAAGAAGGAATTCGTGACATGAAACCTGGAGGGAAAAGAAGAATAATCATTCCACCAGAACTTGGACCACCGGTTGGACCGTCCACCTTCTTCAGCTCGAAACAGTTTGAAGTTTTTGATGTGGAACTACTAAGCATTCAGAACTGTCAAAGGAGGACAGTCCTAGCTTTCTACTCCGATTTTGTATGCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0016491 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0019684 GO:0022607 GO:0031977 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0055114 GO:0061077 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

252

Amino Acids

28.58

Weight (kDa)

9.3

Isoelectric Point (pI)

58.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60370 AT3G60370
fragaria_vesca	FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860
malus_domestica	MD02G1216500.v1.1
prunus_persica	Prupe.2G127600_v2.0.a1
pyrus_communis	pycom02g17810
rosa_chinensis	RchiOBHm_Chr1g0347401
rosa_laevigata	RLG00000028753
rosa_multiflora	Rmu_sc0009756.1_g000001 Rmu_sc0017677.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307850
rosa_rugosa	Rorug01G0186400 Rorug01G0186500
rosa_samantha	Rh1AG204100 Rh1BG169800 Rh1CG189200 Rh1DG200200
rosa_wichuraiana	Rw1G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	436
Acc36I	ACCTGC	1 cut(s)	436
AccB7I	CCANNNNNTGG	3 cut(s)	437, 623, 635
AccII	CGCG	1 cut(s)	94
AciI	CCGC	1 cut(s)	529
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	3 cut(s)	157, 211, 570
AcuI	CTGAAG	1 cut(s)	637
AfiI	CCNNNNNNNGG	4 cut(s)	48, 437, 623, 635
AgeI	ACCGGT	1 cut(s)	631
AgsI	TTSAA	4 cut(s)	61, 272, 563, 671
AjnI	CCWGG	2 cut(s)	553, 586
AjuI	GAANNNNNNNTTGG	2 cut(s)	202, 234
AluBI	AGCT	3 cut(s)	201, 657, 728
AluI	AGCT	3 cut(s)	201, 657, 728
Alw26I	GTCTC	1 cut(s)	375
AlwNI	CAGNNNCTG	1 cut(s)	437
AoxI	GGCC	2 cut(s)	481, 519
ApeKI	GCWGC	1 cut(s)	87
ApoI	RAATTY	3 cut(s)	157, 211, 570
AsiGI	ACCGGT	1 cut(s)	631
Asp700I	GAANNNNTTC	3 cut(s)	315, 339, 570
AspLEI	GCGC	2 cut(s)	264, 285
AspS9I	GGNCC	3 cut(s)	550, 626, 638
AsuHPI	GGTGA	3 cut(s)	428, 434, 460
AvaII	GGWCC	3 cut(s)	550, 626, 638
BaeGI	GKGCMC	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	74
BciT130I	CCWGG	2 cut(s)	555, 588
BciVI	GTATCC	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	2 cut(s)	198, 725
BfoI	RGCGCY	1 cut(s)	265
BfuAI	ACCTGC	1 cut(s)	436
BfuI	GTATCC	1 cut(s)	461
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	2 cut(s)	555, 588
Bme18I	GGWCC	3 cut(s)	550, 626, 638
BmgT120I	GGNCC	3 cut(s)	550, 626, 638
BmiI	GGNNCC	2 cut(s)	131, 552
BmrFI	CCNGG	2 cut(s)	555, 588
BmrI	ACTGGG	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	88
BsaJI	CCNNGG	2 cut(s)	133, 553
BsaWI	WCCGGW	1 cut(s)	631
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 437, 623, 635
Bse118I	RCCGGY	2 cut(s)	483, 631
Bse1I	ACTGG	1 cut(s)	124
BseBI	CCWGG	2 cut(s)	555, 588
BseDI	CCNNGG	2 cut(s)	133, 553
BseLI	CCNNNNNNNGG	4 cut(s)	48, 437, 623, 635
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	124
BseSI	GKGCMC	1 cut(s)	539
BseXI	GCAGC	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	2 cut(s)	483, 521
BshTI	ACCGGT	1 cut(s)	631
BsiSI	CCGG	3 cut(s)	484, 518, 632
BslFI	GGGAC	1 cut(s)	536
BslI	CCNNNNNNNGG	4 cut(s)	48, 437, 623, 635
BsmAI	GTCTC	1 cut(s)	375
BsmFI	GGGAC	1 cut(s)	536
BsmI	GAATGC	1 cut(s)	696
BsnI	GGCC	2 cut(s)	483, 521
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp19I	CCATGG	1 cut(s)	133
BspACI	CCGC	1 cut(s)	529
BspANI	GGCC	2 cut(s)	483, 521
BspCNI	CTCAG	1 cut(s)	398
BspFNI	CGCG	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	131, 552
BspMI	ACCTGC	1 cut(s)	436
BsrFI	RCCGGY	2 cut(s)	483, 631
BsrI	ACTGG	1 cut(s)	124
BssAI	RCCGGY	2 cut(s)	483, 631
BssECI	CCNNGG	2 cut(s)	133, 553
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	2 cut(s)	555, 588
Bst4CI	ACNGT	4 cut(s)	642, 666, 707, 721
Bst6I	CTCTTC	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	92, 485
BstDEI	CTNAG	3 cut(s)	47, 385, 692
BstDSI	CCRYGG	1 cut(s)	133
BstENI	CCTNNNNNAGG	1 cut(s)	46
BstFNI	CGCG	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	2 cut(s)	264, 285
BstMAI	GTCTC	1 cut(s)	375
BstNI	CCWGG	2 cut(s)	555, 588
BstSCI	CCNGG	2 cut(s)	553, 586
BstSLI	GKGCMC	1 cut(s)	539
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	74
BstV2I	GAAGAC	1 cut(s)	318
BstXI	CCANNNNNNTGG	1 cut(s)	464
BsuI	GTATCC	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	483, 521
BtgI	CCRYGG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	2 cut(s)	92, 485
CaiI	CAGNNNCTG	1 cut(s)	437
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	2 cut(s)	264, 285
Cfr10I	RCCGGY	2 cut(s)	483, 631
Cfr13I	GGNCC	3 cut(s)	550, 626, 638
CseI	GACGC	1 cut(s)	83
CspAI	ACCGGT	1 cut(s)	631
CviAII	CATG	4 cut(s)	98, 134, 532, 580
DdeI	CTNAG	3 cut(s)	47, 385, 692
DraI	TTTAAA	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	133
Eco47I	GGWCC	3 cut(s)	550, 626, 638
Eco57I	CTGAAG	1 cut(s)	637
EcoNI	CCTNNNNNAGG	1 cut(s)	46
EcoRI	GAATTC	1 cut(s)	570
EcoRII	CCWGG	2 cut(s)	553, 586
EcoT14I	CCWWGG	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	4 cut(s)	101, 137, 535, 583
FaiI	YATR	8 cut(s)	99, 135, 287, 395, 462, 533, 581, 748
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	4 cut(s)	97, 133, 531, 579
Fnu4HI	GCNGC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	2 cut(s)	198, 725
GlaI	GCGC	2 cut(s)	263, 284
GluI	GCNGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	609
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	2 cut(s)	483, 521
HapII	CCGG	3 cut(s)	484, 518, 632
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	2 cut(s)	264, 285
Hin1II	CATG	4 cut(s)	101, 137, 535, 583
Hin6I	GCGC	2 cut(s)	262, 283
HinP1I	GCGC	2 cut(s)	262, 283
HinfI	GANTC	8 cut(s)	10, 52, 61, 101, 163, 383, 476, 525
HpaII	CCGG	3 cut(s)	484, 518, 632
HphI	GGTGA	3 cut(s)	428, 434, 460
Hpy166II	GTNNAC	1 cut(s)	645
Hpy188I	TCNGA	4 cut(s)	66, 168, 702, 739
Hpy188III	TCNNGA	4 cut(s)	98, 105, 401, 575
Hpy8I	GTNNAC	1 cut(s)	645
HpyAV	CCTTC	4 cut(s)	329, 413, 560, 658
HpyCH4III	ACNGT	4 cut(s)	642, 666, 707, 721
HpyCH4V	TGCA	3 cut(s)	227, 305, 545
HpyF3I	CTNAG	3 cut(s)	47, 385, 692
Hsp92II	CATG	4 cut(s)	101, 137, 535, 583
HspAI	GCGC	2 cut(s)	262, 283
KroI	GCCGGC	1 cut(s)	483
KroNI	GCCGGC	1 cut(s)	485
LmnI	GCTCC	1 cut(s)	129
Lsp1109I	GCAGC	1 cut(s)	74
MaeI	CTAG	2 cut(s)	198, 725
MaeIII	GTNAC	4 cut(s)	190, 355, 500, 575
MboII	GAAGA	7 cut(s)	9, 210, 213, 323, 575, 612, 643
MhlI	GDGCHC	1 cut(s)	539
MluCI	AATT	3 cut(s)	157, 211, 570
MlyI	GAGTC	4 cut(s)	95, 172, 377, 485
MmeI	TCCRAC	2 cut(s)	146, 616
MnlI	CCTC	6 cut(s)	25, 46, 162, 427, 584, 708
Mph1103I	ATGCAT	1 cut(s)	547
MroNI	GCCGGC	1 cut(s)	483
MroXI	GAANNNNTTC	3 cut(s)	315, 339, 570
MseI	TTAA	1 cut(s)	30
MspI	CCGG	3 cut(s)	484, 518, 632
MspR9I	CCNGG	2 cut(s)	555, 588
Mva1269I	GAATGC	1 cut(s)	696
MvaI	CCWGG	2 cut(s)	555, 588
MvnI	CGCG	1 cut(s)	94
NaeI	GCCGGC	1 cut(s)	485
NcoI	CCATGG	1 cut(s)	133
NgoMIV	GCCGGC	1 cut(s)	483
NlaIII	CATG	4 cut(s)	101, 137, 535, 583
NlaIV	GGNNCC	2 cut(s)	131, 552
NmuCI	GTSAC	2 cut(s)	190, 575
NsiI	ATGCAT	1 cut(s)	547
PagI	TCATGA	1 cut(s)	97
PaqCI	CACCTGC	1 cut(s)	436
PctI	GAATGC	1 cut(s)	696
PdiI	GCCGGC	1 cut(s)	485
PdmI	GAANNNNTTC	3 cut(s)	315, 339, 570
PfeI	GAWTC	4 cut(s)	10, 52, 61, 525
PflMI	CCANNNNNTGG	3 cut(s)	437, 623, 635
PinAI	ACCGGT	1 cut(s)	631
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	4 cut(s)	95, 171, 377, 484
PpsI	GAGTC	4 cut(s)	95, 171, 377, 484
Psp6I	CCWGG	2 cut(s)	553, 586
PspGI	CCWGG	2 cut(s)	553, 586
PspN4I	GGNNCC	2 cut(s)	131, 552
PspPI	GGNCC	3 cut(s)	550, 626, 638
PstNI	CAGNNNCTG	1 cut(s)	437
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	88
Sau96I	GGNCC	3 cut(s)	550, 626, 638
SchI	GAGTC	4 cut(s)	95, 172, 377, 485
ScrFI	CCNGG	2 cut(s)	555, 588
SduI	GDGCHC	1 cut(s)	539
SinI	GGWCC	3 cut(s)	550, 626, 638
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	3 cut(s)	157, 211, 570
SsiI	CCGC	1 cut(s)	529
SspMI	CTAG	2 cut(s)	198, 725
StyD4I	CCNGG	2 cut(s)	553, 586
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	4 cut(s)	642, 666, 707, 721
TaqI	TCGA	1 cut(s)	659
TaqII	GACCGA	1 cut(s)	178
TasI	AATT	3 cut(s)	157, 211, 570
TfiI	GAWTC	4 cut(s)	10, 52, 61, 525
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseFI	GTSAC	2 cut(s)	190, 575
TseI	GCWGC	1 cut(s)	87
Tsp45I	GTSAC	2 cut(s)	190, 575
TspDTI	ATGAA	4 cut(s)	44, 270, 316, 596
Van91I	CCANNNNNTGG	3 cut(s)	437, 623, 635
VpaK11BI	GGWCC	3 cut(s)	550, 626, 638
XagI	CCTNNNNNAGG	1 cut(s)	46
XapI	RAATTY	3 cut(s)	157, 211, 570
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XmnI	GAANNNNTTC	3 cut(s)	315, 339, 570
XspI	CTAG	2 cut(s)	198, 725
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.