Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009325

Physical Location & Seq

Genomic Coordinates Reverse (-)

25797845 .. 25798891

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0186400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCTCTCCGCTTCCTCAAGGCGTTTCCGATGTCACAGAGCAGCAGAGCTATTCAAACCCCCTCTGGGTCCCGACCCGTTTCCGTTTCGGATTCAGAAATCTCCACCACTTCCCGACCCGAACAACCGGCCATCCTTCACCACCGTAACTTCATCCATCAACCACACTCACCCCTCTTCCGAATCACAACAACAAACACTAGTGACCCAAATTCTCTCCACCATTGAAAACGCCCCTACATTACTCCAATCCCTACACAACAAACGCTTCTTCCTAACCCCCAAATCTTTCAACCGCGTTTTGATCTCAGCCGCTCAAAGAAACCATCTTTACCTCGTAACCCAAATCTTCAAGCTCGCAATTGCTTCCAAAATCCAACCTTTAAACTCAGATTGCTATCTCACTGTAGCCAAAGCCTTTGCAAGAGCAGATGATTGTGTTGTGGAGCTACTCAGTTTTACCGAGCAAGTATTGGAATTGACCCAACCGAGCATGACAGTAATAAACAGGCTTCTCTTTGCATTGGGTCAATGCAAAGAGACCGATAATGCAATTTTGATCTTCACCCAGGTGAAAGATCGAAACTTTACTCCGGATATGTACACATACAACACTGTTCTTGAGATATTGGGCCGGGCGGGTCGGACAGGTGAGATGCTGGGGGTGTTTGGGGAAATGAAGGAAGCTGGGATTGACCCGGATTTGGTTTCTTACAATACAGTGATAAACCATGTGAGGAAGTTTGGGGAAGTTGATATGTGCTTGTTGTATTTCAAGGAAATGTGTGAAAAGGGTGTTCAGCCTGATTTGCTTACTTACACTGCAGTCATTGATGGGTTGGGGAGGTCAGGAAACATTGAGGAGTCGTTGAAGTTGTTTGGTGAGATGAAGGAGAGGCGGATTCGGCCTTCGTTGTATCTTTATAGAGCAGTGATTAGTAATTTGAAGAAGATGGGGAAGGTGGAGATGGCGGCGAGTTTTATGGAGGAGATGAATTCGTGTGCTTCAAGTCTTTGTGCTAGTCGTAAATCGAATAAATGCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0016491 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0019684 GO:0022607 GO:0031977 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0055114 GO:0061077 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

348

Amino Acids

39.18

Weight (kDa)

8.78

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	169 - 290	6.2e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	187 - 244	3.4e-11	Pentatricopeptide repeat domain
PPR	PF01535	201 - 231	7.1e-06	PPR repeat
PPR_2	PF13041	202 - 244	2.2e-09	PPR repeat family
PPR_2	PF13041	233 - 281	1.4e-12	PPR repeat family
PPR_3	PF13812	258 - 313	4.4e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	264 - 297	6.5e-09	PPR repeat
PPR_2	PF13041	268 - 315	1.9e-09	PPR repeat family
PPR	PF01535	272 - 301	2e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60370 AT3G60370
fragaria_vesca	FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860
malus_domestica	MD02G1216500.v1.1
prunus_persica	Prupe.2G127600_v2.0.a1
pyrus_communis	pycom02g17810
rosa_chinensis	RchiOBHm_Chr1g0347401
rosa_laevigata	RLG00000028753
rosa_multiflora	Rmu_sc0009756.1_g000001 Rmu_sc0017677.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307850
rosa_rugosa	Rorug01G0186400 Rorug01G0186500
rosa_samantha	Rh1AG204100 Rh1BG169800 Rh1CG189200 Rh1DG200200
rosa_wichuraiana	Rw1G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	314
AccII	CGCG	1 cut(s)	297
AccIII	TCCGGA	1 cut(s)	592
AciI	CCGC	6 cut(s)	9, 295, 312, 638, 898, 971
AcoI	YGGCCR	1 cut(s)	128
AcsI	RAATTY	2 cut(s)	210, 994
AfaI	GTAC	1 cut(s)	602
AfiI	CCNNNNNNNGG	2 cut(s)	65, 703
AgsI	TTSAA	8 cut(s)	55, 227, 292, 352, 775, 871, 946, 1008
AhlI	ACTAGT	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	567
AleI	CACNNNNGTG	1 cut(s)	569
AluBI	AGCT	4 cut(s)	49, 355, 448, 686
AluI	AGCT	4 cut(s)	49, 355, 448, 686
Alw26I	GTCTC	1 cut(s)	533
Aor13HI	TCCGGA	1 cut(s)	592
AoxI	GGCC	3 cut(s)	128, 631, 905
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	2 cut(s)	210, 994
AspS9I	GGNCC	2 cut(s)	68, 631
AsuC2I	CCSGG	2 cut(s)	635, 698
AsuHPI	GGTGA	6 cut(s)	130, 161, 556, 583, 662, 893
AvaII	GGWCC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	6 cut(s)	139, 164, 333, 827, 946, 961
BciT130I	CCWGG	1 cut(s)	569
BcnI	CCSGG	2 cut(s)	635, 698
BcoDI	GTCTC	1 cut(s)	533
BcuI	ACTAGT	1 cut(s)	199
BfaI	CTAG	2 cut(s)	200, 1020
BfmI	CTRYAG	2 cut(s)	405, 822
BisI	GCNGC	3 cut(s)	42, 312, 972
BlsI	GCNGC	3 cut(s)	43, 313, 973
Bme1390I	CCNGG	3 cut(s)	569, 635, 698
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	2 cut(s)	68, 631
BmiI	GGNNCC	2 cut(s)	69, 70
BmrFI	CCNGG	3 cut(s)	569, 635, 698
BmsI	GCATC	1 cut(s)	645
BpuEI	CTTGAG	1 cut(s)	641
BpuMI	CCSGG	2 cut(s)	635, 698
BsaBI	GATNNNNATC	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	567
BsaWI	WCCGGW	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 703
Bse118I	RCCGGY	1 cut(s)	126
Bse8I	GATNNNNATC	1 cut(s)	396
BseAI	TCCGGA	1 cut(s)	592
BseBI	CCWGG	1 cut(s)	569
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	2 cut(s)	131, 152
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	2 cut(s)	65, 703
BseMII	CTCAG	3 cut(s)	321, 402, 466
BseRI	GAGGAG	2 cut(s)	875, 1001
BseXI	GCAGC	1 cut(s)	53
BseYI	CCCAGC	2 cut(s)	658, 686
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	3 cut(s)	130, 633, 907
BsiSI	CCGG	4 cut(s)	127, 593, 634, 698
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	2 cut(s)	65, 703
BsmAI	GTCTC	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	3 cut(s)	130, 633, 907
Bso31I	GGTCTC	1 cut(s)	533
Bsp13I	TCCGGA	1 cut(s)	592
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	3 cut(s)	303, 558, 577
BspACI	CCGC	6 cut(s)	9, 295, 312, 638, 898, 971
BspANI	GGCC	3 cut(s)	130, 633, 907
BspCNI	CTCAG	3 cut(s)	320, 401, 465
BspEI	TCCGGA	1 cut(s)	592
BspFNI	CGCG	1 cut(s)	297
BspLI	GGNNCC	2 cut(s)	69, 70
BspMAI	CTGCAG	1 cut(s)	826
BspTNI	GGTCTC	1 cut(s)	533
BsrBI	CCGCTC	1 cut(s)	314
BsrFI	RCCGGY	1 cut(s)	126
BsrGI	TGTACA	1 cut(s)	600
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	3 cut(s)	303, 558, 577
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	5 cut(s)	145, 406, 499, 616, 721
Bst6I	CTCTTC	1 cut(s)	181
BstAUI	TGTACA	1 cut(s)	600
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	3 cut(s)	307, 388, 452
BstF5I	GGATG	2 cut(s)	131, 152
BstFNI	CGCG	1 cut(s)	297
BstKTI	GATC	3 cut(s)	306, 561, 580
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	3 cut(s)	303, 558, 577
BstMWI	GCNNNNNNNGC	2 cut(s)	808, 904
BstNI	CCWGG	1 cut(s)	569
BstSCI	CCNGG	3 cut(s)	567, 633, 696
BstSFI	CTRYAG	2 cut(s)	405, 822
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	53
BsuRI	GGCC	3 cut(s)	130, 633, 907
BtsCI	GGATG	2 cut(s)	131, 152
BtsI	GCAGTG	2 cut(s)	819, 936
BtsIMutI	CAGTG	5 cut(s)	402, 612, 726, 819, 936
Cac8I	GCNNGC	1 cut(s)	357
Cfr10I	RCCGGY	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	68, 631
Csp6I	GTAC	1 cut(s)	601
CviAII	CATG	2 cut(s)	493, 731
CviQI	GTAC	1 cut(s)	601
DdeI	CTNAG	3 cut(s)	307, 388, 452
DpnI	GATC	3 cut(s)	305, 560, 579
DpnII	GATC	3 cut(s)	303, 558, 577
DraI	TTTAAA	1 cut(s)	384
EaeI	YGGCCR	1 cut(s)	128
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
EciI	GGCGGA	1 cut(s)	913
Eco31I	GGTCTC	1 cut(s)	533
Eco47I	GGWCC	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	68
EcoRI	GAATTC	1 cut(s)	994
EcoRII	CCWGG	1 cut(s)	567
FaeI	CATG	2 cut(s)	496, 734
FaiI	YATR	7 cut(s)	494, 599, 607, 732, 758, 924, 983
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	2 cut(s)	492, 730
FauI	CCCGC	1 cut(s)	631
Fnu4HI	GCNGC	3 cut(s)	42, 312, 972
FokI	GGATG	2 cut(s)	118, 139
Fsp4HI	GCNGC	3 cut(s)	42, 312, 972
FspBI	CTAG	2 cut(s)	200, 1020
GluI	GCNGC	3 cut(s)	42, 312, 972
GsaI	CCCAGC	2 cut(s)	662, 690
HaeIII	GGCC	3 cut(s)	130, 633, 907
HapII	CCGG	4 cut(s)	127, 593, 634, 698
Hin1II	CATG	2 cut(s)	496, 734
HinfI	GANTC	4 cut(s)	91, 182, 863, 901
HpaII	CCGG	4 cut(s)	127, 593, 634, 698
HphI	GGTGA	6 cut(s)	130, 161, 556, 583, 662, 893
Hpy166II	GTNNAC	1 cut(s)	603
Hpy188I	TCNGA	6 cut(s)	29, 90, 96, 181, 391, 645
Hpy188III	TCNNGA	5 cut(s)	71, 113, 593, 620, 849
Hpy8I	GTNNAC	1 cut(s)	603
HpyAV	CCTTC	5 cut(s)	145, 673, 883, 918, 952
HpyCH4III	ACNGT	5 cut(s)	145, 406, 499, 616, 721
HpyCH4V	TGCA	5 cut(s)	422, 521, 534, 551, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	808, 904
HpyF3I	CTNAG	3 cut(s)	307, 388, 452
Hsp92II	CATG	2 cut(s)	496, 734
KflI	GGGWCCC	1 cut(s)	68
Kpn2I	TCCGGA	1 cut(s)	592
Kzo9I	GATC	3 cut(s)	303, 558, 577
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	1 cut(s)	645
MaeI	CTAG	2 cut(s)	200, 1020
MaeIII	GTNAC	4 cut(s)	32, 145, 202, 337
MalI	GATC	3 cut(s)	305, 560, 579
MbiI	CCGCTC	1 cut(s)	314
MboI	GATC	3 cut(s)	303, 558, 577
MboII	GAAGA	6 cut(s)	168, 262, 340, 553, 958, 961
MfeI	CAATTG	1 cut(s)	360
MluCI	AATT	6 cut(s)	210, 360, 476, 552, 940, 994
MlyI	GAGTC	1 cut(s)	872
MmeI	TCCRAC	2 cut(s)	400, 623
MnlI	CCTC	9 cut(s)	25, 72, 184, 344, 729, 837, 853, 888, 979
MroI	TCCGGA	1 cut(s)	592
MseI	TTAA	1 cut(s)	383
MslI	CAYNNNNRTG	1 cut(s)	569
MspI	CCGG	4 cut(s)	127, 593, 634, 698
MspR9I	CCNGG	3 cut(s)	569, 635, 698
MunI	CAATTG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	569
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	808, 904
NciI	CCSGG	2 cut(s)	635, 698
NdeII	GATC	3 cut(s)	303, 558, 577
NlaIII	CATG	2 cut(s)	496, 734
NlaIV	GGNNCC	2 cut(s)	69, 70
NmuCI	GTSAC	2 cut(s)	32, 202
OliI	CACNNNNGTG	1 cut(s)	569
PfeI	GAWTC	3 cut(s)	91, 182, 901
PkrI	GCNGC	3 cut(s)	43, 313, 973
PleI	GAGTC	1 cut(s)	871
PpsI	GAGTC	1 cut(s)	871
PpuMI	RGGWCCY	1 cut(s)	68
Psp5II	RGGWCCY	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	567
PspFI	CCCAGC	2 cut(s)	658, 686
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	2 cut(s)	69, 70
PspPI	GGNCC	2 cut(s)	68, 631
PspPPI	RGGWCCY	1 cut(s)	68
PstI	CTGCAG	1 cut(s)	826
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
RseI	CAYNNNNRTG	1 cut(s)	569
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	3 cut(s)	42, 312, 972
Sau3AI	GATC	3 cut(s)	303, 558, 577
Sau96I	GGNCC	2 cut(s)	68, 631
SchI	GAGTC	1 cut(s)	872
ScrFI	CCNGG	3 cut(s)	569, 635, 698
SfaNI	GCATC	1 cut(s)	645
SfcI	CTRYAG	2 cut(s)	405, 822
SinI	GGWCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	2 cut(s)	16, 620
SmoI	CTYRAG	2 cut(s)	16, 620
SpeI	ACTAGT	1 cut(s)	199
Sse9I	AATT	6 cut(s)	210, 360, 476, 552, 940, 994
SsiI	CCGC	6 cut(s)	9, 295, 312, 638, 898, 971
SspMI	CTAG	2 cut(s)	200, 1020
StyD4I	CCNGG	3 cut(s)	567, 633, 696
TaaI	ACNGT	5 cut(s)	145, 406, 499, 616, 721
TaqI	TCGA	2 cut(s)	580, 1031
TaqII	GACCGA	1 cut(s)	557
TasI	AATT	6 cut(s)	210, 360, 476, 552, 940, 994
TatI	WGTACW	1 cut(s)	600
TauI	GCSGC	2 cut(s)	314, 974
TfiI	GAWTC	3 cut(s)	91, 182, 901
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TscAI	CASTG	5 cut(s)	409, 619, 726, 826, 936
TseFI	GTSAC	2 cut(s)	32, 202
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	2 cut(s)	32, 202
TspDTI	ATGAA	4 cut(s)	141, 692, 902, 1007
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	5 cut(s)	409, 619, 726, 826, 936
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	2 cut(s)	210, 994
XspI	CTAG	2 cut(s)	200, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.