Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009325

Physical Location & Seq

Genomic Coordinates Forward (+)

9389267 .. 9393789

Gene Structure 4523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g09860.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCTGATGGTTCCCTCGTCTCTCTCTTATAAAACCATATCTCCCACACCAAGCACTCATTTCAGTCACAATAAACAAATATTCCAATGCTGTTCAAGTCAGAACTCGAGACATCACAGGGCAGAGAGTGGTGGTATATCACATTTTGAAGAGAATTTGAATCGGAGGCTTGTGATGTTCCTTTCAGTCACAACTACTTTGTTCCCAAATTTATCTTCTTCTGCGAAAACAAAAATTAAAAGTCCATTTGATGAAAGACGCTTGCTGGAGCAAAACAAGCGTATACAGAAAGAAAATAATGTACCTGAAGACTTTCCAAGTTTCATTAGAGAAGGTTTTCAGGTTAAGGTGGTAACTCCAGAAAACTACACAACACGTGAGTCAGGGCTTATATATCGTGATTTTGCAGTTGGTGAGGGTGATTGCCCACAGGCTGGTCAGCAGGTTATGTTCCACTATGTTGGCTACAACGAGTCAGGCCGTCGCATAGATAGCAGCTACAATCAAGGTGCTCCGGCCAGAATACGCATGGGAACAAATGCATTGGTCCCAGGATTTGAAGAGGGAATCCGTGACATGAAACCTGGGGGCAAAAGAAGAATAATCATTCCACCAGAACTTGGACCACCGGTAGGACCTTCCACCTTTTTCAGCTCAAAACAGTTTGAAGTTTTTGATGTTGAACTGCTAAGCATTCAAAACTGTGTAAGGAGGACCATAGCTGCTTTTTACTCTGATTTTGTTTGCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0016491 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0019684 GO:0022607 GO:0031977 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0055114 GO:0061077 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

251

Amino Acids

28.28

Weight (kDa)

8.8

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	143 - 185	8.8e-06	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60370 AT3G60370
fragaria_vesca	FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860
malus_domestica	MD02G1216500.v1.1
prunus_persica	Prupe.2G127600_v2.0.a1
pyrus_communis	pycom02g17810
rosa_chinensis	RchiOBHm_Chr1g0347401
rosa_laevigata	RLG00000028753
rosa_multiflora	Rmu_sc0009756.1_g000001 Rmu_sc0017677.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307850
rosa_rugosa	Rorug01G0186400 Rorug01G0186500
rosa_samantha	Rh1AG204100 Rh1BG169800 Rh1CG189200 Rh1DG200200
rosa_wichuraiana	Rw1G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	30
Acc36I	ACCTGC	1 cut(s)	433
AccB7I	CCANNNNNTGG	2 cut(s)	434, 620
AccI	GTMKAC	1 cut(s)	283
AcoI	YGGCCR	1 cut(s)	516
AcsI	RAATTY	2 cut(s)	154, 208
AcuI	CTGAAG	1 cut(s)	327
AcvI	CACGTG	1 cut(s)	377
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	3 cut(s)	434, 620, 632
AflIII	ACRYGT	1 cut(s)	374
AgeI	ACCGGT	1 cut(s)	628
AgsI	TTSAA	7 cut(s)	96, 149, 160, 560, 668, 683, 698
AjnI	CCWGG	2 cut(s)	550, 583
AjuI	GAANNNNNNNTTGG	2 cut(s)	199, 231
AluBI	AGCT	3 cut(s)	498, 654, 722
AluI	AGCT	3 cut(s)	498, 654, 722
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	2 cut(s)	24, 103
Ama87I	CYCGRG	1 cut(s)	106
AoxI	GGCC	2 cut(s)	478, 516
ApeKI	GCWGC	2 cut(s)	495, 722
ApoI	RAATTY	2 cut(s)	154, 208
AsiGI	ACCGGT	1 cut(s)	628
Asp700I	GAANNNNTTC	2 cut(s)	312, 336
AspS9I	GGNCC	4 cut(s)	547, 623, 635, 714
AsuHPI	GGTGA	2 cut(s)	425, 431
AvaI	CYCGRG	1 cut(s)	106
AvaII	GGWCC	4 cut(s)	547, 623, 635, 714
BbrPI	CACGTG	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	2 cut(s)	507, 709
BceAI	ACGGC	1 cut(s)	465
BciT130I	CCWGG	2 cut(s)	552, 585
BcoDI	GTCTC	2 cut(s)	24, 103
BfuAI	ACCTGC	1 cut(s)	433
BisI	GCNGC	2 cut(s)	496, 723
BlpI	GCTNAGC	1 cut(s)	689
BlsI	GCNGC	2 cut(s)	497, 724
Bme1390I	CCNGG	2 cut(s)	552, 585
Bme18I	GGWCC	4 cut(s)	547, 623, 635, 714
BmeT110I	CYCGRG	1 cut(s)	106
BmgT120I	GGNCC	4 cut(s)	547, 623, 635, 714
BmiI	GGNNCC	2 cut(s)	12, 549
BmrFI	CCNGG	2 cut(s)	552, 585
BpiI	GAAGAC	1 cut(s)	315
BpmI	CTGGAG	2 cut(s)	287, 342
Bpu1102I	GCTNAGC	1 cut(s)	689
BsaAI	YACGTR	1 cut(s)	377
BsaJI	CCNNGG	2 cut(s)	550, 584
BsaWI	WCCGGW	1 cut(s)	628
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	3 cut(s)	434, 620, 632
Bse118I	RCCGGY	1 cut(s)	628
BseBI	CCWGG	2 cut(s)	552, 585
BseDI	CCNNGG	2 cut(s)	550, 584
BseLI	CCNNNNNNNGG	3 cut(s)	434, 620, 632
BseXI	GCAGC	2 cut(s)	507, 709
BshFI	GGCC	2 cut(s)	480, 518
BshTI	ACCGGT	1 cut(s)	628
BsiHKAI	GWGCWC	1 cut(s)	514
BsiHKCI	CYCGRG	1 cut(s)	106
BsiSI	CCGG	2 cut(s)	515, 629
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	3 cut(s)	434, 620, 632
BsmAI	GTCTC	2 cut(s)	24, 103
BsmBI	CGTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	533
BsmI	GAATGC	1 cut(s)	693
BsnI	GGCC	2 cut(s)	480, 518
BsoBI	CYCGRG	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp1720I	GCTNAGC	1 cut(s)	689
BspANI	GGCC	2 cut(s)	480, 518
BspLI	GGNNCC	2 cut(s)	12, 549
BspMI	ACCTGC	1 cut(s)	433
BsrFI	RCCGGY	1 cut(s)	628
BssAI	RCCGGY	1 cut(s)	628
BssECI	CCNNGG	2 cut(s)	550, 584
BssNAI	GTATAC	1 cut(s)	284
Bst1107I	GTATAC	1 cut(s)	284
Bst2UI	CCWGG	2 cut(s)	552, 585
Bst4CI	ACNGT	2 cut(s)	663, 704
Bst6I	CTCTTC	2 cut(s)	144, 555
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	1 cut(s)	689
BstMAI	GTCTC	2 cut(s)	24, 103
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 492
BstNI	CCWGG	2 cut(s)	552, 585
BstSCI	CCNGG	2 cut(s)	550, 583
BstV1I	GCAGC	2 cut(s)	507, 709
BstV2I	GAAGAC	1 cut(s)	315
BstXI	CCANNNNNNTGG	1 cut(s)	461
BstZ17I	GTATAC	1 cut(s)	284
BsuRI	GGCC	2 cut(s)	480, 518
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	263
Cfr10I	RCCGGY	1 cut(s)	628
Cfr13I	GGNCC	4 cut(s)	547, 623, 635, 714
CseI	GACGC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	302
CspAI	ACCGGT	1 cut(s)	628
CviAII	CATG	2 cut(s)	529, 577
CviJI	RGCY	9 cut(s)	169, 388, 434, 465, 480, 498, 518, 654, 722
CviKI_1	RGCY	9 cut(s)	169, 388, 434, 465, 480, 498, 518, 654, 722
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	1 cut(s)	689
EaeI	YGGCCR	1 cut(s)	516
Eam1104I	CTCTTC	2 cut(s)	144, 555
EarI	CTCTTC	2 cut(s)	144, 555
Eco47I	GGWCC	4 cut(s)	547, 623, 635, 714
Eco57I	CTGAAG	1 cut(s)	327
Eco72I	CACGTG	1 cut(s)	377
Eco88I	CYCGRG	1 cut(s)	106
EcoO109I	RGGNCCY	1 cut(s)	635
EcoRII	CCWGG	2 cut(s)	550, 583
EcoT22I	ATGCAT	1 cut(s)	544
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	2 cut(s)	532, 580
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	2 cut(s)	528, 576
FblI	GTMKAC	1 cut(s)	283
Fnu4HI	GCNGC	2 cut(s)	496, 723
Fsp4HI	GCNGC	2 cut(s)	496, 723
GluI	GCNGC	2 cut(s)	496, 723
GsuI	CTGGAG	2 cut(s)	287, 342
HaeIII	GGCC	2 cut(s)	480, 518
HapII	CCGG	2 cut(s)	515, 629
HgaI	GACGC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	532, 580
HinfI	GANTC	4 cut(s)	160, 380, 473, 567
HpaII	CCGG	2 cut(s)	515, 629
HphI	GGTGA	2 cut(s)	425, 431
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	3 cut(s)	102, 165, 736
Hpy188III	TCNNGA	3 cut(s)	108, 359, 398
Hpy8I	GTNNAC	1 cut(s)	284
Hpy99I	CGWCG	1 cut(s)	486
HpyAV	CCTTC	2 cut(s)	326, 648
HpyCH4III	ACNGT	2 cut(s)	663, 704
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	2 cut(s)	407, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 492
HpyF3I	CTNAG	1 cut(s)	689
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	2 cut(s)	532, 580
LmnI	GCTCC	2 cut(s)	268, 517
Lsp1109I	GCAGC	2 cut(s)	507, 709
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	4 cut(s)	65, 187, 352, 572
MboII	GAAGA	6 cut(s)	161, 207, 210, 320, 572, 609
MhlI	GDGCHC	1 cut(s)	514
MluCI	AATT	3 cut(s)	154, 208, 234
MlyI	GAGTC	2 cut(s)	389, 482
MnlI	CCTC	5 cut(s)	25, 159, 409, 556, 705
Mph1103I	ATGCAT	1 cut(s)	544
MroXI	GAANNNNTTC	2 cut(s)	312, 336
MseI	TTAA	2 cut(s)	237, 345
MspI	CCGG	2 cut(s)	515, 629
MspR9I	CCNGG	2 cut(s)	552, 585
Mva1269I	GAATGC	1 cut(s)	693
MvaI	CCWGG	2 cut(s)	552, 585
MwoI	GCNNNNNNNGC	2 cut(s)	277, 492
NlaIII	CATG	2 cut(s)	532, 580
NlaIV	GGNNCC	2 cut(s)	12, 549
NmuCI	GTSAC	3 cut(s)	65, 187, 572
NsiI	ATGCAT	1 cut(s)	544
PaeR7I	CTCGAG	1 cut(s)	106
PctI	GAATGC	1 cut(s)	693
PdmI	GAANNNNTTC	2 cut(s)	312, 336
PfeI	GAWTC	2 cut(s)	160, 567
PflMI	CCANNNNNTGG	2 cut(s)	434, 620
PinAI	ACCGGT	1 cut(s)	628
PkrI	GCNGC	2 cut(s)	497, 724
PleI	GAGTC	2 cut(s)	388, 481
PmaCI	CACGTG	1 cut(s)	377
PmlI	CACGTG	1 cut(s)	377
PpsI	GAGTC	2 cut(s)	388, 481
Ppu21I	YACGTR	1 cut(s)	377
PpuMI	RGGWCCY	1 cut(s)	635
PsiI	TTATAA	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	635
Psp6I	CCWGG	2 cut(s)	550, 583
PspCI	CACGTG	1 cut(s)	377
PspGI	CCWGG	2 cut(s)	550, 583
PspN4I	GGNNCC	2 cut(s)	12, 549
PspPI	GGNCC	4 cut(s)	547, 623, 635, 714
PspPPI	RGGWCCY	1 cut(s)	635
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SaqAI	TTAA	2 cut(s)	237, 345
SatI	GCNGC	2 cut(s)	496, 723
Sau96I	GGNCC	4 cut(s)	547, 623, 635, 714
SchI	GAGTC	2 cut(s)	389, 482
ScrFI	CCNGG	2 cut(s)	552, 585
SduI	GDGCHC	1 cut(s)	514
Sfr274I	CTCGAG	1 cut(s)	106
SinI	GGWCC	4 cut(s)	547, 623, 635, 714
SlaI	CTCGAG	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	3 cut(s)	154, 208, 234
SspI	AATATT	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	550, 583
TaaI	ACNGT	2 cut(s)	663, 704
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	1 cut(s)	107
TasI	AATT	3 cut(s)	154, 208, 234
TfiI	GAWTC	2 cut(s)	160, 567
Tru1I	TTAA	2 cut(s)	237, 345
Tru9I	TTAA	2 cut(s)	237, 345
TseFI	GTSAC	3 cut(s)	65, 187, 572
TseI	GCWGC	2 cut(s)	495, 722
Tsp45I	GTSAC	3 cut(s)	65, 187, 572
TspDTI	ATGAA	3 cut(s)	267, 313, 593
TspGWI	ACGGA	1 cut(s)	560
Van91I	CCANNNNNTGG	2 cut(s)	434, 620
VpaK11BI	GGWCC	4 cut(s)	547, 623, 635, 714
XapI	RAATTY	2 cut(s)	154, 208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XhoI	CTCGAG	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	283
XmnI	GAANNNNTTC	2 cut(s)	312, 336
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.