Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009325

Physical Location & Seq

Genomic Coordinates Reverse (-)

29326277 .. 29328838

Gene Structure 2562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00307850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCTGTTCAAGGCAGAGAGTGGTGGCATATCACATTGTGAAGAGAATTTGAATCGGAGGCTTATTGTGTTCCTTTCAGTCACGACAAGCTTGTTTCCAAATTTATCTTCTTCTGCGAAAACAAAGAGTAAAAGTCCATTTGATGAAAGACGCTTGCTGGAGCAAAACAGGCGTATACAGAAAGAAAATAATGCACCTGAAGAGTTTCCAAGTTTCATTAGAGAAGGTTTTCAGGTTAAGGTAGTAACGCCGGAAGACTACACAACACGTGAATCAGGACTTATATATCGGGATTTTGCAGTTGGTGAGGGTGATTGCCCACAGGCTGGTCAGCAGGTGATGTTCCACTATGTTGGCTACAATGAGTCAGGCCGTCGCATAGACAGCAGCTACAATCAAGGTTCTCCTGCCAGAATACGCATGGGAACAAATGCATTGGTCCCAGGATGTGCTACAGGATTTGAAGAAGGAATTCGTGACATGAAACCTGGGGGAAAAAGAAGAATAATCATTCCACCAGAACTTGGACCACCGGTAGGACCTTCCACCTTTTTCAGCTCAAAACAGTTTGAAGTTTTTGATGTGGAACTGCTAAGCATTCAAAACTGTGTAAGGAGGACTATAGCTGCTTTTTACTCTGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0016491 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0019684 GO:0022607 GO:0031977 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0055114 GO:0061077 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

215

Amino Acids

24.15

Weight (kDa)

7.65

Isoelectric Point (pI)

56.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	107 - 176	6.9e-15	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60370 AT3G60370
fragaria_vesca	FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860 FvH4_7g09860
malus_domestica	MD02G1216500.v1.1
prunus_persica	Prupe.2G127600_v2.0.a1
pyrus_communis	pycom02g17810
rosa_chinensis	RchiOBHm_Chr1g0347401
rosa_laevigata	RLG00000028753
rosa_multiflora	Rmu_sc0009756.1_g000001 Rmu_sc0017677.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307850
rosa_rugosa	Rorug01G0186400 Rorug01G0186500
rosa_samantha	Rh1AG204100 Rh1BG169800 Rh1CG189200 Rh1DG200200
rosa_wichuraiana	Rw1G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	325
Acc36I	ACCTGC	1 cut(s)	325
AccB7I	CCANNNNNTGG	2 cut(s)	326, 524
AccI	GTMKAC	1 cut(s)	175
AcsI	RAATTY	3 cut(s)	46, 100, 471
AcuI	CTGAAG	1 cut(s)	219
AcvI	CACGTG	1 cut(s)	269
AdeI	CACNNNGTG	1 cut(s)	38
AfiI	CCNNNNNNNGG	3 cut(s)	326, 524, 536
AflIII	ACRYGT	1 cut(s)	266
AgeI	ACCGGT	1 cut(s)	532
AgsI	TTSAA	5 cut(s)	10, 52, 464, 572, 602
AjnI	CCWGG	2 cut(s)	442, 487
AjuI	GAANNNNNNNTTGG	2 cut(s)	91, 123
AluBI	AGCT	4 cut(s)	90, 390, 558, 626
AluI	AGCT	4 cut(s)	90, 390, 558, 626
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	2 cut(s)	387, 626
ApoI	RAATTY	3 cut(s)	46, 100, 471
AsiGI	ACCGGT	1 cut(s)	532
Asp700I	GAANNNNTTC	3 cut(s)	204, 228, 471
AspS9I	GGNCC	3 cut(s)	439, 527, 539
AsuHPI	GGTGA	3 cut(s)	317, 323, 349
AvaII	GGWCC	3 cut(s)	439, 527, 539
BbrPI	CACGTG	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	399, 613
BceAI	ACGGC	1 cut(s)	357
BciT130I	CCWGG	2 cut(s)	444, 489
BfmI	CTRYAG	2 cut(s)	453, 621
BfuAI	ACCTGC	1 cut(s)	325
BisI	GCNGC	2 cut(s)	388, 627
BlpI	GCTNAGC	1 cut(s)	593
BlsI	GCNGC	2 cut(s)	389, 628
Bme1390I	CCNGG	2 cut(s)	444, 489
Bme18I	GGWCC	3 cut(s)	439, 527, 539
BmgT120I	GGNCC	3 cut(s)	439, 527, 539
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	2 cut(s)	444, 489
BpiI	GAAGAC	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	179
Bpu1102I	GCTNAGC	1 cut(s)	593
BsaAI	YACGTR	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	442, 488
BsaWI	WCCGGW	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	3 cut(s)	326, 524, 536
Bse118I	RCCGGY	1 cut(s)	532
BseBI	CCWGG	2 cut(s)	444, 489
BseDI	CCNNGG	2 cut(s)	442, 488
BseGI	GGATG	1 cut(s)	452
BseLI	CCNNNNNNNGG	3 cut(s)	326, 524, 536
BseXI	GCAGC	2 cut(s)	399, 613
BshFI	GGCC	1 cut(s)	372
BshTI	ACCGGT	1 cut(s)	532
BsiSI	CCGG	2 cut(s)	251, 533
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	3 cut(s)	326, 524, 536
BsmFI	GGGAC	1 cut(s)	425
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	1 cut(s)	372
Bsp1720I	GCTNAGC	1 cut(s)	593
BspANI	GGCC	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	441
BspMI	ACCTGC	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	532
BssAI	RCCGGY	1 cut(s)	532
BssECI	CCNNGG	2 cut(s)	442, 488
BssNAI	GTATAC	1 cut(s)	176
Bst1107I	GTATAC	1 cut(s)	176
Bst2UI	CCWGG	2 cut(s)	444, 489
Bst4CI	ACNGT	2 cut(s)	567, 608
Bst6I	CTCTTC	2 cut(s)	36, 195
BstBAI	YACGTR	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	593
BstF5I	GGATG	1 cut(s)	452
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 384
BstNI	CCWGG	2 cut(s)	444, 489
BstSCI	CCNGG	2 cut(s)	442, 487
BstSFI	CTRYAG	2 cut(s)	453, 621
BstV1I	GCAGC	2 cut(s)	399, 613
BstV2I	GAAGAC	1 cut(s)	261
BstXI	CCANNNNNNTGG	1 cut(s)	353
BstZ17I	GTATAC	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	452
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	155
Cfr10I	RCCGGY	1 cut(s)	532
Cfr13I	GGNCC	3 cut(s)	439, 527, 539
CseI	GACGC	1 cut(s)	159
CspAI	ACCGGT	1 cut(s)	532
CviAII	CATG	2 cut(s)	421, 481
CviJI	RGCY	8 cut(s)	61, 90, 326, 357, 372, 390, 558, 626
CviKI_1	RGCY	8 cut(s)	61, 90, 326, 357, 372, 390, 558, 626
DdeI	CTNAG	1 cut(s)	593
DraIII	CACNNNGTG	1 cut(s)	38
Eam1104I	CTCTTC	2 cut(s)	36, 195
EarI	CTCTTC	2 cut(s)	36, 195
Eco47I	GGWCC	3 cut(s)	439, 527, 539
Eco57I	CTGAAG	1 cut(s)	219
Eco72I	CACGTG	1 cut(s)	269
EcoO109I	RGGNCCY	1 cut(s)	539
EcoRI	GAATTC	1 cut(s)	471
EcoRII	CCWGG	2 cut(s)	442, 487
EcoT22I	ATGCAT	1 cut(s)	436
FaeI	CATG	2 cut(s)	424, 484
FaiI	YATR	9 cut(s)	29, 176, 284, 286, 351, 380, 422, 482, 623
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	2 cut(s)	420, 480
FblI	GTMKAC	1 cut(s)	175
Fnu4HI	GCNGC	2 cut(s)	388, 627
FokI	GGATG	1 cut(s)	459
Fsp4HI	GCNGC	2 cut(s)	388, 627
GluI	GCNGC	2 cut(s)	388, 627
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	372
HapII	CCGG	2 cut(s)	251, 533
HgaI	GACGC	1 cut(s)	159
Hin1II	CATG	2 cut(s)	424, 484
HindIII	AAGCTT	1 cut(s)	88
HinfI	GANTC	3 cut(s)	52, 272, 365
HpaII	CCGG	2 cut(s)	251, 533
HphI	GGTGA	3 cut(s)	317, 323, 349
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	2 cut(s)	57, 640
Hpy188III	TCNNGA	4 cut(s)	82, 276, 290, 476
Hpy8I	GTNNAC	1 cut(s)	176
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	3 cut(s)	218, 461, 552
HpyCH4III	ACNGT	2 cut(s)	567, 608
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	3 cut(s)	194, 299, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 384
HpyF3I	CTNAG	1 cut(s)	593
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	2 cut(s)	424, 484
LmnI	GCTCC	1 cut(s)	160
Lsp1109I	GCAGC	2 cut(s)	399, 613
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	3 cut(s)	79, 244, 476
MboII	GAAGA	7 cut(s)	53, 99, 102, 212, 266, 476, 513
MluCI	AATT	3 cut(s)	46, 100, 471
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	3 cut(s)	51, 301, 609
Mph1103I	ATGCAT	1 cut(s)	436
MroXI	GAANNNNTTC	3 cut(s)	204, 228, 471
MseI	TTAA	1 cut(s)	237
MspI	CCGG	2 cut(s)	251, 533
MspR9I	CCNGG	2 cut(s)	444, 489
Mva1269I	GAATGC	1 cut(s)	597
MvaI	CCWGG	2 cut(s)	444, 489
MwoI	GCNNNNNNNGC	2 cut(s)	169, 384
NlaIII	CATG	2 cut(s)	424, 484
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	2 cut(s)	79, 476
NsiI	ATGCAT	1 cut(s)	436
PaqCI	CACCTGC	1 cut(s)	325
PctI	GAATGC	1 cut(s)	597
PdmI	GAANNNNTTC	3 cut(s)	204, 228, 471
PfeI	GAWTC	2 cut(s)	52, 272
PflMI	CCANNNNNTGG	2 cut(s)	326, 524
PinAI	ACCGGT	1 cut(s)	532
PkrI	GCNGC	2 cut(s)	389, 628
PleI	GAGTC	1 cut(s)	373
PmaCI	CACGTG	1 cut(s)	269
PmlI	CACGTG	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	373
Ppu21I	YACGTR	1 cut(s)	269
PpuMI	RGGWCCY	1 cut(s)	539
Psp5II	RGGWCCY	1 cut(s)	539
Psp6I	CCWGG	2 cut(s)	442, 487
PspCI	CACGTG	1 cut(s)	269
PspGI	CCWGG	2 cut(s)	442, 487
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	3 cut(s)	439, 527, 539
PspPPI	RGGWCCY	1 cut(s)	539
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	2 cut(s)	388, 627
Sau96I	GGNCC	3 cut(s)	439, 527, 539
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	2 cut(s)	444, 489
SfcI	CTRYAG	2 cut(s)	453, 621
SinI	GGWCC	3 cut(s)	439, 527, 539
Sse9I	AATT	3 cut(s)	46, 100, 471
StyD4I	CCNGG	2 cut(s)	442, 487
TaaI	ACNGT	2 cut(s)	567, 608
TaiI	ACGT	1 cut(s)	271
TasI	AATT	3 cut(s)	46, 100, 471
TfiI	GAWTC	2 cut(s)	52, 272
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseFI	GTSAC	2 cut(s)	79, 476
TseI	GCWGC	2 cut(s)	387, 626
Tsp45I	GTSAC	2 cut(s)	79, 476
TspDTI	ATGAA	3 cut(s)	159, 205, 497
Van91I	CCANNNNNTGG	2 cut(s)	326, 524
VpaK11BI	GGWCC	3 cut(s)	439, 527, 539
XapI	RAATTY	3 cut(s)	46, 100, 471
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XmiI	GTMKAC	1 cut(s)	175
XmnI	GAANNNNTTC	3 cut(s)	204, 228, 471
Zsp2I	ATGCAT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.