AT3G60590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011176
Physical Location & Seq
Forward (+)
22398228 .. 22400257
2030 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G60590.4

Sequence Viewer

Length: 711 bp
ATGTCAGCGCAACAACGAACTAATTCTCAAGTTCAGGTACTTAAATGGCCAATATGGCTTTTGGGTCCATCTGTTCTCCTCACAAGCGGTATGGCGCCTACTTTATGGCTTCCGTTGTCATCGGTTTTTCTCGGTTCCAACGTGGTTAGTCTACTTTCTTTGATCGGTCTAGATTGCATTTTCAATCTTGGAGCAACCCTTTTCCTCTTAATGGCTGATTCTTGCGCACGTCCTAAAGACCCATCACAGTCCTGCAACAGCAAACCACCATTTAGCTATAAGTTCTGGAACATGTTTTCACTCATAATCGGGTTTCTAGTCCCAATGTTACTTCTCTTCGGATCCCAATCTGGCCTTCTCGCTTCTCTCCAGCCCCAGATTCCTTTCCTCTCGTCCGCTGTTATCCTCTTCCCGTACTTCATTCTCCTTGCTGTTCAGACATTAACAGAGATCCTCACATGGCACTGGCAATCACCGGTCTGGCTAGTCACACCAGTTGTCTACGAGGCTTACCGAATCTTGCAACTGATGAGAGGGTTGACACTTAGTGCAGAGGTCAACGCACCGGTTTGGGTGGTTCATATGCTTCGTGGGCTTGTCTCTTGGTGGGTATTGATCTTGGGAATGCAACTCATGAGAGTTGCTTGGTTTGCTGGTTTTGCATCTAGAACAACAACAGGTCAGCAACCACAATCTGTTGCTTCTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

26.27

Weight (kDa)

9.6

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60590 AT3G60590 AT3G60590 AT3G60590
fragaria_vesca FvH4_7g11080 FvH4_7g11080
malus_domestica MD07G1115500.v1.1
prunus_persica Prupe.2G138000_v2.0.a1
pyrus_communis pycom07g10900
rosa_chinensis RchiOBHm_Chr1g0349101
rosa_laevigata RLG00000028606
rosa_multiflora Rmu_sc0008324.1_g000003 Rmu_sc0012100.1_g000004
rosa_roxburghii Rroxscaffold_4G00306120
rosa_rugosa Rorug01G0200100
rosa_samantha Rh1AG217800 Rh1BG183300 Rh1CG202200 Rh1DG213100
rosa_wichuraiana Rw1G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 226
AccB1I GGYRCC 1 cut(s) 94
AccI GTMKAC 2 cut(s) 151, 501
AciI CCGC 2 cut(s) 87, 396
AclWI GGATC 3 cut(s) 336, 349, 445
AcoI YGGCCR 1 cut(s) 47
AcyI GRCGYC 1 cut(s) 95
AdeI CACNNNGTG 1 cut(s) 548
AfaI GTAC 2 cut(s) 39, 416
AfiI CCNNNNNNNGG 1 cut(s) 211
AflIII ACRYGT 1 cut(s) 291
AgeI ACCGGT 2 cut(s) 475, 565
AgsI TTSAA 1 cut(s) 184
AjiI CACGTC 1 cut(s) 230
AjuI GAANNNNNNNTTGG 2 cut(s) 339, 371
AluBI AGCT 1 cut(s) 276
AluI AGCT 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 604
AlwI GGATC 3 cut(s) 336, 349, 445
AoxI GGCC 2 cut(s) 47, 352
AsiGI ACCGGT 2 cut(s) 475, 565
Asp700I GAANNNNTTC 1 cut(s) 22
AspLEI GCGC 3 cut(s) 10, 97, 227
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 465
AvaII GGWCC 1 cut(s) 65
BalI TGGCCA 1 cut(s) 49
BamHI GGATCC 1 cut(s) 341
BanI GGYRCC 1 cut(s) 94
BccI CCATC 2 cut(s) 76, 250
BcoDI GTCTC 1 cut(s) 604
BfaI CTAG 4 cut(s) 170, 317, 485, 666
BfoI RGCGCY 1 cut(s) 98
BglI GCCNNNNNGGC 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 65
BmgBI CACGTC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 4 cut(s) 66, 96, 136, 343
BmsI GCATC 1 cut(s) 671
BpmI CTGGAG 1 cut(s) 353
BpuEI CTTGAG 1 cut(s) 12
BsaBI GATNNNNATC 1 cut(s) 346
BsaHI GRCGYC 1 cut(s) 95
BsaWI WCCGGW 2 cut(s) 475, 565
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse118I RCCGGY 2 cut(s) 475, 565
Bse1I ACTGG 2 cut(s) 470, 494
Bse8I GATNNNNATC 1 cut(s) 346
BseJI GATNNNNATC 1 cut(s) 346
BseLI CCNNNNNNNGG 1 cut(s) 211
BseNI ACTGG 2 cut(s) 470, 494
BseRI GAGGAG 1 cut(s) 68
BsgI GTGCAG 1 cut(s) 570
BshFI GGCC 2 cut(s) 49, 354
BshNI GGYRCC 1 cut(s) 94
BshTI ACCGGT 2 cut(s) 475, 565
BsiSI CCGG 2 cut(s) 476, 566
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 604
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 630
BsnI GGCC 2 cut(s) 49, 354
Bsp143I GATC 4 cut(s) 162, 341, 450, 615
BspACI CCGC 2 cut(s) 87, 396
BspANI GGCC 2 cut(s) 49, 354
BspHI TCATGA 1 cut(s) 633
BspLI GGNNCC 4 cut(s) 66, 96, 136, 343
BspPI GGATC 3 cut(s) 336, 349, 445
BspT107I GGYRCC 1 cut(s) 94
BsrFI RCCGGY 2 cut(s) 475, 565
BsrI ACTGG 2 cut(s) 470, 494
BssAI RCCGGY 2 cut(s) 475, 565
BssMI GATC 4 cut(s) 162, 341, 450, 615
BssNI GRCGYC 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 249
Bst6I CTCTTC 2 cut(s) 341, 413
BstACI GRCGYC 1 cut(s) 95
BstDEI CTNAG 2 cut(s) 545, 705
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 3 cut(s) 10, 97, 227
BstKTI GATC 4 cut(s) 165, 344, 453, 618
BstMAI GTCTC 1 cut(s) 604
BstMBI GATC 4 cut(s) 162, 341, 450, 615
BstMWI GCNNNNNNNGC 4 cut(s) 55, 592, 650, 659
BstNSI RCATGY 1 cut(s) 295
BstX2I RGATCY 2 cut(s) 341, 450
BstYI RGATCY 2 cut(s) 341, 450
BsuRI GGCC 2 cut(s) 49, 354
BtrI CACGTC 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 463
CciI TCATGA 1 cut(s) 633
CfoI GCGC 3 cut(s) 10, 97, 227
Cfr10I RCCGGY 2 cut(s) 475, 565
Cfr13I GGNCC 1 cut(s) 65
Csp6I GTAC 2 cut(s) 38, 415
CspAI ACCGGT 2 cut(s) 475, 565
CviAII CATG 3 cut(s) 292, 459, 634
CviQI GTAC 2 cut(s) 38, 415
DdeI CTNAG 2 cut(s) 545, 705
DinI GGCGCC 1 cut(s) 96
DpnI GATC 4 cut(s) 164, 343, 452, 617
DpnII GATC 4 cut(s) 162, 341, 450, 615
DraIII CACNNNGTG 1 cut(s) 548
EaeI YGGCCR 1 cut(s) 47
Eam1104I CTCTTC 2 cut(s) 341, 413
EarI CTCTTC 2 cut(s) 341, 413
Eco47I GGWCC 1 cut(s) 65
EgeI GGCGCC 1 cut(s) 96
EheI GGCGCC 1 cut(s) 96
FaeI CATG 3 cut(s) 295, 462, 637
FaqI GGGAC 1 cut(s) 305
FatI CATG 3 cut(s) 291, 458, 633
FauNDI CATATG 1 cut(s) 582
FblI GTMKAC 2 cut(s) 151, 501
FspBI CTAG 4 cut(s) 170, 317, 485, 666
FspI TGCGCA 1 cut(s) 226
GlaI GCGC 3 cut(s) 9, 96, 226
GsuI CTGGAG 1 cut(s) 353
HaeII RGCGCY 1 cut(s) 98
HaeIII GGCC 2 cut(s) 49, 354
HapII CCGG 2 cut(s) 476, 566
HhaI GCGC 3 cut(s) 10, 97, 227
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 3 cut(s) 295, 462, 637
Hin6I GCGC 3 cut(s) 8, 95, 225
HinP1I GCGC 3 cut(s) 8, 95, 225
HincII GTYRAC 2 cut(s) 540, 559
HindII GTYRAC 2 cut(s) 540, 559
HinfI GANTC 3 cut(s) 218, 379, 516
HpaII CCGG 2 cut(s) 476, 566
HphI GGTGA 1 cut(s) 465
Hpy166II GTNNAC 4 cut(s) 152, 502, 540, 559
Hpy188I TCNGA 2 cut(s) 341, 438
Hpy188III TCNNGA 4 cut(s) 170, 286, 634, 666
Hpy8I GTNNAC 4 cut(s) 152, 502, 540, 559
HpyAV CCTTC 1 cut(s) 365
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4IV ACGT 2 cut(s) 141, 229
HpyCH4V TGCA 6 cut(s) 177, 255, 523, 551, 628, 662
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 592, 650, 659
HpyF3I CTNAG 2 cut(s) 545, 705
HpySE526I ACGT 2 cut(s) 141, 229
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 3 cut(s) 295, 462, 637
HspAI GCGC 3 cut(s) 8, 95, 225
KasI GGCGCC 1 cut(s) 94
Kzo9I GATC 4 cut(s) 162, 341, 450, 615
LmnI GCTCC 1 cut(s) 191
LweI GCATC 1 cut(s) 671
MaeI CTAG 4 cut(s) 170, 317, 485, 666
MaeII ACGT 2 cut(s) 141, 229
MaeIII GTNAC 2 cut(s) 327, 487
MalI GATC 4 cut(s) 164, 343, 452, 617
MboI GATC 4 cut(s) 162, 341, 450, 615
MboII GAAGA 2 cut(s) 328, 400
MflI RGATCY 2 cut(s) 341, 450
MlsI TGGCCA 1 cut(s) 49
MluCI AATT 1 cut(s) 22
MluNI TGGCCA 1 cut(s) 49
Mly113I GGCGCC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 8 cut(s) 89, 215, 398, 416, 464, 499, 527, 547
Mox20I TGGCCA 1 cut(s) 49
MroXI GAANNNNTTC 1 cut(s) 22
MscI TGGCCA 1 cut(s) 49
MseI TTAA 3 cut(s) 42, 209, 443
Msp20I TGGCCA 1 cut(s) 49
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 2 cut(s) 476, 566
Mva1269I GAATGC 1 cut(s) 630
MwoI GCNNNNNNNGC 4 cut(s) 55, 592, 650, 659
NarI GGCGCC 1 cut(s) 95
NdeI CATATG 1 cut(s) 582
NdeII GATC 4 cut(s) 162, 341, 450, 615
NlaIII CATG 3 cut(s) 295, 462, 637
NlaIV GGNNCC 4 cut(s) 66, 96, 136, 343
NmuCI GTSAC 1 cut(s) 487
NsbI TGCGCA 1 cut(s) 226
NspI RCATGY 1 cut(s) 295
PagI TCATGA 1 cut(s) 633
PciI ACATGT 1 cut(s) 291
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PctI GAATGC 1 cut(s) 630
PdmI GAANNNNTTC 1 cut(s) 22
PfeI GAWTC 3 cut(s) 218, 379, 516
PinAI ACCGGT 2 cut(s) 475, 565
PluTI GGCGCC 1 cut(s) 98
PscI ACATGT 1 cut(s) 291
PspN4I GGNNCC 4 cut(s) 66, 96, 136, 343
PspPI GGNCC 1 cut(s) 65
PsuI RGATCY 2 cut(s) 341, 450
RsaI GTAC 2 cut(s) 39, 416
RsaNI GTAC 2 cut(s) 38, 415
SaqAI TTAA 3 cut(s) 42, 209, 443
Sau3AI GATC 4 cut(s) 162, 341, 450, 615
Sau96I GGNCC 1 cut(s) 65
SetI ASST 6 cut(s) 39, 144, 232, 278, 558, 682
SfaNI GCATC 1 cut(s) 671
SfoI GGCGCC 1 cut(s) 96
SinI GGWCC 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 1 cut(s) 22
SsiI CCGC 2 cut(s) 87, 396
SspDI GGCGCC 1 cut(s) 94
SspMI CTAG 4 cut(s) 170, 317, 485, 666
TaaI ACNGT 1 cut(s) 249
TaiI ACGT 2 cut(s) 144, 232
TaqII GACCGA 1 cut(s) 155
TasI AATT 1 cut(s) 22
TfiI GAWTC 3 cut(s) 218, 379, 516
Tru1I TTAA 3 cut(s) 42, 209, 443
Tru9I TTAA 3 cut(s) 42, 209, 443
TscAI CASTG 1 cut(s) 470
TseFI GTSAC 1 cut(s) 487
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 2 cut(s) 409, 569
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 65
XbaI TCTAGA 2 cut(s) 169, 665
XceI RCATGY 1 cut(s) 295
XmiI GTMKAC 2 cut(s) 151, 501
XmnI GAANNNNTTC 1 cut(s) 22
XspI CTAG 4 cut(s) 170, 317, 485, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.