Rroxscaffold_4G00306120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0011176
Physical Location & Seq
Reverse (-)
26926833 .. 26928783
1951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00306120.1

Sequence Viewer

Length: 1008 bp
ATGAACCATAGAATGGCATCTTTAGCTCGAGCTCCGTCCATGATGTCTACCAATACTGTTCCCAGACTCCATATTCGAACCCTGAACTTGTTGAAAAGCTCACACTCAGTACGTTTACACACTTTCCCTCACATTCAGATAAAAAGTCCCCCTGTTTGCTGCACAAAACTGTCTTCCTGGGATCCCTCATCTGACACATATGCCCCCACGGACAGTGCCAGTGATAACTTTTTGAATAAAACCACCAACATATTTGAAACCCTTTCCTCTGCTACCACTGCCGAAGCATCAGATACCAACAGTGAAAAGCTTAATGGCGCAAGTAATCAGAAAGGAACCGAGCTTCAGGTCCTCAAATGGCCAATGTGGCTTCTGGGCCCTTCTTTTCTCCTCCTCACTGGCATGTTGCCAACACTGTGGCTACCAATATCTTCCATATTTCTTGGCCCCAACATAGCAAGCCTACTTTCTTTGGTTGGACTCGATTGCATTTTTAATCTTGGTGCAACCCTTTTTCTCCTCATGGCTGATTCGATAGCCCGCCCTAAAAGTTCAGCACAGGCCTGCAAAAGCAAGCCTCCCTTTAGCTACAAGTTTTGGAATATAGTTGCAACTGTGACTGGATTTATCATCCCCCTGATGATGGCCTATGGATCCCAACAGGGTTTTCTCCAACCCCAGTTGCCTCCCATCTCATTTGCAGTTCTATTGGGTCCCTATCTTCTGCTTATCGCAGTACAGATTGTGACTGAGATGCTGACTTGGAATTGGCAGTCACCGGTTTGGCTGGTAACCCCTGTGGTTTATGAGGGTTACCGTTTGTTGCAGCTGATGAGAGGATTGAAGCTTGGAACTGAAATCGTCGCACCAGCATGGATGATGTATACAATTAGAGGACTGGTGTCCTGGTGGGTTCTGATTCTTGGTATGCAGTTGATGAGGGTTGCTTGGTTTGCAGGCTTCGCTAGTCGATATCGTCAGCAACTGTCGCCTCCTGGTGATACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

335

Amino Acids

37.21

Weight (kDa)

9.51

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60590 AT3G60590 AT3G60590 AT3G60590
fragaria_vesca FvH4_7g11080 FvH4_7g11080
malus_domestica MD07G1115500.v1.1
prunus_persica Prupe.2G138000_v2.0.a1
pyrus_communis pycom07g10900
rosa_chinensis RchiOBHm_Chr1g0349101
rosa_laevigata RLG00000028606
rosa_multiflora Rmu_sc0008324.1_g000003 Rmu_sc0012100.1_g000004
rosa_roxburghii Rroxscaffold_4G00306120
rosa_rugosa Rorug01G0200100
rosa_samantha Rh1AG217800 Rh1BG183300 Rh1CG202200 Rh1DG213100
rosa_wichuraiana Rw1G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 13
AccI GTMKAC 2 cut(s) 47, 884
AciI CCGC 1 cut(s) 541
AclWI GGATC 4 cut(s) 176, 189, 648, 661
AcoI YGGCCR 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 2 cut(s) 111, 738
AfiI CCNNNNNNNGG 2 cut(s) 13, 643
AgeI ACCGGT 1 cut(s) 778
AgsI TTSAA 4 cut(s) 94, 235, 257, 844
AjnI CCWGG 3 cut(s) 176, 905, 994
AjuI GAANNNNNNNTTGG 2 cut(s) 651, 683
AluBI AGCT 8 cut(s) 26, 32, 99, 310, 343, 588, 829, 847
AluI AGCT 8 cut(s) 26, 32, 99, 310, 343, 588, 829, 847
Alw21I GWGCWC 1 cut(s) 34
AlwI GGATC 4 cut(s) 176, 189, 648, 661
AlwNI CAGNNNCTG 1 cut(s) 985
Ama87I CYCGRG 1 cut(s) 27
AoxI GGCC 5 cut(s) 359, 376, 445, 561, 645
ApaI GGGCCC 1 cut(s) 380
ApeKI GCWGC 2 cut(s) 159, 826
ArsI GACNNNNNNTTYG 2 cut(s) 57, 89
AsiGI ACCGGT 1 cut(s) 778
AspLEI GCGC 1 cut(s) 320
AspS9I GGNCC 5 cut(s) 349, 376, 377, 446, 713
AsuHPI GGTGA 1 cut(s) 768
AsuII TTCGAA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 27
AvaII GGWCC 2 cut(s) 349, 713
BaeGI GKGCMC 1 cut(s) 380
BalI TGGCCA 1 cut(s) 361
BamHI GGATCC 2 cut(s) 181, 653
BanII GRGCYC 2 cut(s) 34, 380
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 34
BbvI GCAGC 2 cut(s) 146, 838
BccI CCATC 2 cut(s) 637, 698
BciT130I CCWGG 3 cut(s) 178, 907, 996
BfaI CTAG 1 cut(s) 966
BglI GCCNNNNNGGC 1 cut(s) 367
BisI GCNGC 2 cut(s) 160, 827
BlsI GCNGC 2 cut(s) 161, 828
Bme1390I CCNGG 3 cut(s) 178, 907, 996
Bme18I GGWCC 2 cut(s) 349, 713
BmeT110I CYCGRG 1 cut(s) 27
BmgT120I GGNCC 5 cut(s) 349, 376, 377, 446, 713
BmiI GGNNCC 7 cut(s) 183, 337, 378, 448, 655, 714, 715
BmrFI CCNGG 3 cut(s) 178, 907, 996
BmrI ACTGGG 1 cut(s) 673
BmsI GCATC 3 cut(s) 26, 296, 744
BmuI ACTGGG 1 cut(s) 673
BoxI GACNNNNGTC 1 cut(s) 901
BpiI GAAGAC 1 cut(s) 165
Bpu14I TTCGAA 1 cut(s) 76
BsaJI CCNNGG 2 cut(s) 177, 207
BsaWI WCCGGW 1 cut(s) 778
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 643
Bse118I RCCGGY 1 cut(s) 778
Bse1I ACTGG 5 cut(s) 219, 403, 625, 679, 903
BseBI CCWGG 3 cut(s) 178, 907, 996
BseDI CCNNGG 2 cut(s) 177, 207
BseGI GGATG 2 cut(s) 630, 882
BseLI CCNNNNNNNGG 2 cut(s) 13, 643
BseMII CTCAG 2 cut(s) 120, 741
BseNI ACTGG 5 cut(s) 219, 403, 625, 679, 903
BseRI GAGGAG 3 cut(s) 380, 383, 509
BseSI GKGCMC 1 cut(s) 380
BseXI GCAGC 2 cut(s) 146, 838
BsgI GTGCAG 1 cut(s) 145
BshFI GGCC 5 cut(s) 361, 378, 447, 563, 647
BshTI ACCGGT 1 cut(s) 778
BsiHKAI GWGCWC 1 cut(s) 34
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 1 cut(s) 779
BslFI GGGAC 2 cut(s) 132, 699
BslI CCNNNNNNNGG 2 cut(s) 13, 643
BsmFI GGGAC 2 cut(s) 132, 699
BsnI GGCC 5 cut(s) 361, 378, 447, 563, 647
BsoBI CYCGRG 1 cut(s) 27
Bsp119I TTCGAA 1 cut(s) 76
Bsp120I GGGCCC 1 cut(s) 376
Bsp1286I GDGCHC 2 cut(s) 34, 380
Bsp143I GATC 2 cut(s) 181, 653
BspACI CCGC 1 cut(s) 541
BspANI GGCC 5 cut(s) 361, 378, 447, 563, 647
BspCNI CTCAG 2 cut(s) 119, 742
BspLI GGNNCC 7 cut(s) 183, 337, 378, 448, 655, 714, 715
BspPI GGATC 4 cut(s) 176, 189, 648, 661
BspT104I TTCGAA 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 778
BsrI ACTGG 5 cut(s) 219, 403, 625, 679, 903
BssAI RCCGGY 1 cut(s) 778
BssECI CCNNGG 2 cut(s) 177, 207
BssMI GATC 2 cut(s) 181, 653
BssNAI GTATAC 1 cut(s) 885
Bst1107I GTATAC 1 cut(s) 885
Bst2UI CCWGG 3 cut(s) 178, 907, 996
Bst4CI ACNGT 8 cut(s) 58, 171, 215, 302, 417, 616, 818, 987
BstBI TTCGAA 1 cut(s) 76
BstC8I GCNNGC 5 cut(s) 460, 541, 565, 575, 958
BstDEI CTNAG 3 cut(s) 106, 750, 1005
BstDSI CCRYGG 1 cut(s) 207
BstEII GGTNACC 2 cut(s) 790, 812
BstF5I GGATG 2 cut(s) 630, 882
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 2 cut(s) 184, 656
BstMBI GATC 2 cut(s) 181, 653
BstMWI GCNNNNNNNGC 6 cut(s) 23, 278, 367, 953, 962, 988
BstNI CCWGG 3 cut(s) 178, 907, 996
BstNSI RCATGY 1 cut(s) 406
BstPAI GACNNNNGTC 1 cut(s) 901
BstPI GGTNACC 2 cut(s) 790, 812
BstSCI CCNGG 3 cut(s) 176, 905, 994
BstSLI GKGCMC 1 cut(s) 380
BstV1I GCAGC 2 cut(s) 146, 838
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 2 cut(s) 181, 653
BstXI CCANNNNNNTGG 1 cut(s) 417
BstYI RGATCY 2 cut(s) 181, 653
BstZ17I GTATAC 1 cut(s) 885
BsuRI GGCC 5 cut(s) 361, 378, 447, 563, 647
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 2 cut(s) 630, 882
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 6 cut(s) 220, 226, 276, 307, 396, 413
Cac8I GCNNGC 5 cut(s) 460, 541, 565, 575, 958
CaiI CAGNNNCTG 1 cut(s) 985
CfoI GCGC 1 cut(s) 320
Cfr10I RCCGGY 1 cut(s) 778
Cfr13I GGNCC 5 cut(s) 349, 376, 377, 446, 713
Csp6I GTAC 2 cut(s) 110, 737
CspAI ACCGGT 1 cut(s) 778
CviAII CATG 4 cut(s) 40, 403, 523, 873
CviQI GTAC 2 cut(s) 110, 737
DdeI CTNAG 3 cut(s) 106, 750, 1005
DpnI GATC 2 cut(s) 183, 655
DpnII GATC 2 cut(s) 181, 653
EaeI YGGCCR 1 cut(s) 359
Ecl136II GAGCTC 1 cut(s) 32
Eco147I AGGCCT 1 cut(s) 563
Eco24I GRGCYC 2 cut(s) 34, 380
Eco32I GATATC 1 cut(s) 974
Eco47I GGWCC 2 cut(s) 349, 713
Eco53kI GAGCTC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 27
Eco91I GGTNACC 2 cut(s) 790, 812
EcoICRI GAGCTC 1 cut(s) 32
EcoO109I RGGNCCY 3 cut(s) 349, 377, 713
EcoO65I GGTNACC 2 cut(s) 790, 812
EcoRII CCWGG 3 cut(s) 176, 905, 994
EcoRV GATATC 1 cut(s) 974
EcoT38I GRGCYC 2 cut(s) 34, 380
FaeI CATG 4 cut(s) 43, 406, 526, 876
FalI AAGNNNNNCTT 2 cut(s) 566, 598
FaqI GGGAC 2 cut(s) 132, 699
FatI CATG 4 cut(s) 39, 402, 522, 872
FauI CCCGC 1 cut(s) 548
FauNDI CATATG 1 cut(s) 199
FblI GTMKAC 2 cut(s) 47, 884
Fnu4HI GCNGC 2 cut(s) 160, 827
FokI GGATG 2 cut(s) 617, 889
FriOI GRGCYC 2 cut(s) 34, 380
Fsp4HI GCNGC 2 cut(s) 160, 827
FspBI CTAG 1 cut(s) 966
GlaI GCGC 1 cut(s) 319
GluI GCNGC 2 cut(s) 160, 827
HaeIII GGCC 5 cut(s) 361, 378, 447, 563, 647
HapII CCGG 1 cut(s) 779
HhaI GCGC 1 cut(s) 320
Hin1II CATG 4 cut(s) 43, 406, 526, 876
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HindIII AAGCTT 2 cut(s) 308, 845
HinfI GANTC 4 cut(s) 66, 480, 530, 919
HpaII CCGG 1 cut(s) 779
HphI GGTGA 1 cut(s) 768
Hpy166II GTNNAC 3 cut(s) 48, 116, 885
Hpy188I TCNGA 5 cut(s) 138, 193, 292, 330, 918
Hpy8I GTNNAC 3 cut(s) 48, 116, 885
Hpy99I CGWCG 1 cut(s) 866
HpyAV CCTTC 1 cut(s) 390
HpyCH4III ACNGT 8 cut(s) 58, 171, 215, 302, 417, 616, 818, 987
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 9 cut(s) 162, 489, 506, 567, 611, 701, 826, 931, 956
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 278, 367, 953, 962, 988
HpyF3I CTNAG 3 cut(s) 106, 750, 1005
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 4 cut(s) 43, 406, 526, 876
HspAI GCGC 1 cut(s) 318
KflI GGGWCCC 1 cut(s) 713
Kzo9I GATC 2 cut(s) 181, 653
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 2 cut(s) 146, 838
LweI GCATC 3 cut(s) 26, 296, 744
MaeI CTAG 1 cut(s) 966
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 5 cut(s) 616, 745, 774, 790, 812
MalI GATC 2 cut(s) 183, 655
MboI GATC 2 cut(s) 181, 653
MboII GAAGA 3 cut(s) 165, 423, 713
MflI RGATCY 2 cut(s) 181, 653
MhlI GDGCHC 2 cut(s) 34, 380
MlsI TGGCCA 1 cut(s) 361
MluCI AATT 2 cut(s) 766, 888
MluNI TGGCCA 1 cut(s) 361
MlyI GAGTC 2 cut(s) 60, 474
MmeI TCCRAC 2 cut(s) 457, 697
Mox20I TGGCCA 1 cut(s) 361
MscI TGGCCA 1 cut(s) 361
MseI TTAA 2 cut(s) 312, 495
MslI CAYNNNNRTG 2 cut(s) 401, 871
Msp20I TGGCCA 1 cut(s) 361
MspA1I CMGCKG 1 cut(s) 829
MspI CCGG 1 cut(s) 779
MspR9I CCNGG 3 cut(s) 178, 907, 996
MvaI CCWGG 3 cut(s) 178, 907, 996
MwoI GCNNNNNNNGC 6 cut(s) 23, 278, 367, 953, 962, 988
NdeI CATATG 1 cut(s) 199
NdeII GATC 2 cut(s) 181, 653
NlaIII CATG 4 cut(s) 43, 406, 526, 876
NlaIV GGNNCC 7 cut(s) 183, 337, 378, 448, 655, 714, 715
NmuCI GTSAC 3 cut(s) 616, 745, 774
NspI RCATGY 1 cut(s) 406
NspV TTCGAA 1 cut(s) 76
PaeR7I CTCGAG 1 cut(s) 27
PceI AGGCCT 1 cut(s) 563
PfeI GAWTC 2 cut(s) 530, 919
PflMI CCANNNNNTGG 1 cut(s) 13
PinAI ACCGGT 1 cut(s) 778
PkrI GCNGC 2 cut(s) 161, 828
PleI GAGTC 2 cut(s) 60, 474
PpsI GAGTC 2 cut(s) 60, 474
PpuMI RGGWCCY 2 cut(s) 349, 713
PshAI GACNNNNGTC 1 cut(s) 901
Psp124BI GAGCTC 1 cut(s) 34
Psp5II RGGWCCY 2 cut(s) 349, 713
Psp6I CCWGG 3 cut(s) 176, 905, 994
PspEI GGTNACC 2 cut(s) 790, 812
PspGI CCWGG 3 cut(s) 176, 905, 994
PspN4I GGNNCC 7 cut(s) 183, 337, 378, 448, 655, 714, 715
PspOMI GGGCCC 1 cut(s) 376
PspPI GGNCC 5 cut(s) 349, 376, 377, 446, 713
PspPPI RGGWCCY 2 cut(s) 349, 713
PspXI VCTCGAGB 1 cut(s) 27
PstNI CAGNNNCTG 1 cut(s) 985
PsuI RGATCY 2 cut(s) 181, 653
PvuII CAGCTG 1 cut(s) 829
RsaI GTAC 2 cut(s) 111, 738
RsaNI GTAC 2 cut(s) 110, 737
RseI CAYNNNNRTG 2 cut(s) 401, 871
SacI GAGCTC 1 cut(s) 34
SaqAI TTAA 2 cut(s) 312, 495
SatI GCNGC 2 cut(s) 160, 827
Sau3AI GATC 2 cut(s) 181, 653
Sau96I GGNCC 5 cut(s) 349, 376, 377, 446, 713
SchI GAGTC 2 cut(s) 60, 474
ScrFI CCNGG 3 cut(s) 178, 907, 996
SduI GDGCHC 2 cut(s) 34, 380
SfaNI GCATC 3 cut(s) 26, 296, 744
Sfr274I CTCGAG 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 76
SinI GGWCC 2 cut(s) 349, 713
SlaI CTCGAG 1 cut(s) 27
SmiMI CAYNNNNRTG 2 cut(s) 401, 871
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 2 cut(s) 766, 888
SseBI AGGCCT 1 cut(s) 563
SsiI CCGC 1 cut(s) 541
SspMI CTAG 1 cut(s) 966
SstI GAGCTC 1 cut(s) 34
StuI AGGCCT 1 cut(s) 563
StyD4I CCNGG 3 cut(s) 176, 905, 994
TaaI ACNGT 8 cut(s) 58, 171, 215, 302, 417, 616, 818, 987
TaiI ACGT 1 cut(s) 115
TaqI TCGA 5 cut(s) 28, 76, 483, 533, 970
TasI AATT 2 cut(s) 766, 888
TatI WGTACW 1 cut(s) 736
TfiI GAWTC 2 cut(s) 530, 919
Tru1I TTAA 2 cut(s) 312, 495
Tru9I TTAA 2 cut(s) 312, 495
TscAI CASTG 6 cut(s) 220, 226, 283, 307, 403, 420
TseFI GTSAC 3 cut(s) 616, 745, 774
TseI GCWGC 2 cut(s) 159, 826
Tsp45I GTSAC 3 cut(s) 616, 745, 774
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 24, 224
TspRI CASTG 6 cut(s) 220, 226, 283, 307, 403, 420
Van91I CCANNNNNTGG 1 cut(s) 13
VpaK11BI GGWCC 2 cut(s) 349, 713
XceI RCATGY 1 cut(s) 406
XhoI CTCGAG 1 cut(s) 27
XmiI GTMKAC 2 cut(s) 47, 884
XspI CTAG 1 cut(s) 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.