Rorug01G0200100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011176
Physical Location & Seq
Forward (+)
27951795 .. 27956482
4688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0200100.1

Sequence Viewer

Length: 930 bp
ATGGAAACAGTCAAGCCAATACAAGTGGCTTTGGAGCAACAACATTATAAGAGTAGTGCTGATTCAAGACCTCTTCAGTCAAGACGAAGACCTTTGACTTCGAGAGCAACCTCTCTAAGAGCAACTCCTCTCCTTCTCTTTCTCTTAACGGTGATCACACTCCTAGTCCTAGTCTTCTCAGAAGCCGACTTTCAGTGCCACCAAACCCTCTGTCAACGTACTTCGGTCCTAGTCTCCTCGGGAGCCGACGGTAGTGCCGCGACCACAACGGTTACAGAACCAGCCAAGCAAGGAAGCTCAGCAAAAGTCCTCACCACGAGGCACAAAGAATCCCACGACGAGGTTGGTGCTCTCCTCGTCCACAATCGCTTGATAGAAGTCAGGTCAAGGGACACCCCCGACGACCGCACCCGAAAGATTGGTGACAGCAGTAGGCTAGGGTTATTGTTTCTTGGGCTGCTTGTCAAACGTGCTGATGTCTGGGTTAAGGAGCTGGGTCTTAGTAATATACATTTCATGTATGCAAATGCCACTACTTCTTTTAATCAACTGGTGTCTACCTACCCTGGACCACTGATGCTTGTTTCAATCCTGTGCCCAGATCCGTATTTTAAGAGAAAGCATCACAAGAGACGGGTTGTACAGAAGCCTTTAGTAGATTCCATTGTGAATAATTTAGCTCCCCACGGACAGGTGTTTATACAGTCCGATGTACTTGACATCGCACTTGAGATGAGAAACCAATTTGATTCTCTGCCCCATGTTCTGAAGCACATAGATGAAATCGAATCCAGCGTGTTGTGTGACAGTGAGGGATGGTTGTTGAGCAATCCAATAGGAAAAAGGACGGAAAGAGAAATTCATGCTGAATTTGAAGGGGCAAAAATTTACAGGAGAGTATACCAGAAAGTACAGAAGGCTATTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

34.69

Weight (kDa)

9.35

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_4 PF02390 161 - 256 4.8e-19 Putative methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60590 AT3G60590 AT3G60590 AT3G60590
fragaria_vesca FvH4_7g11080 FvH4_7g11080
malus_domestica MD07G1115500.v1.1
prunus_persica Prupe.2G138000_v2.0.a1
pyrus_communis pycom07g10900
rosa_chinensis RchiOBHm_Chr1g0349101
rosa_laevigata RLG00000028606
rosa_multiflora Rmu_sc0008324.1_g000003 Rmu_sc0012100.1_g000004
rosa_roxburghii Rroxscaffold_4G00306120
rosa_rugosa Rorug01G0200100
rosa_samantha Rh1AG217800 Rh1BG183300 Rh1CG202200 Rh1DG213100
rosa_wichuraiana Rw1G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 48
AccI GTMKAC 2 cut(s) 557, 900
AccII CGCG 1 cut(s) 260
AciI CCGC 2 cut(s) 258, 406
AclWI GGATC 1 cut(s) 596
AcsI RAATTY 3 cut(s) 858, 869, 885
AcuI CTGAAG 2 cut(s) 59, 788
AfaI GTAC 4 cut(s) 220, 642, 714, 912
AfiI CCNNNNNNNGG 2 cut(s) 340, 691
AgsI TTSAA 3 cut(s) 66, 588, 875
AjnI CCWGG 1 cut(s) 565
AluBI AGCT 3 cut(s) 297, 493, 680
AluI AGCT 3 cut(s) 297, 493, 680
Alw21I GWGCWC 1 cut(s) 352
Alw26I GTCTC 2 cut(s) 238, 625
AlwI GGATC 1 cut(s) 596
Ama87I CYCGRG 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 457
ApoI RAATTY 3 cut(s) 858, 869, 885
ArsI GACNNNNNNTTYG 2 cut(s) 196, 228
AspS9I GGNCC 2 cut(s) 226, 569
AsuHPI GGTGA 3 cut(s) 163, 304, 434
AvaI CYCGRG 1 cut(s) 238
AvaII GGWCC 2 cut(s) 226, 569
BaeGI GKGCMC 1 cut(s) 599
BauI CACGAG 1 cut(s) 316
BbsI GAAGAC 2 cut(s) 94, 166
Bbv12I GWGCWC 1 cut(s) 352
BbvI GCAGC 1 cut(s) 444
BccI CCATC 1 cut(s) 810
BcgI CGANNNNNNTGC 4 cut(s) 236, 270, 329, 363
BciT130I CCWGG 1 cut(s) 567
BclI TGATCA 1 cut(s) 153
BcoDI GTCTC 2 cut(s) 238, 625
BfaI CTAG 4 cut(s) 164, 170, 230, 437
BisI GCNGC 2 cut(s) 258, 458
BlpI GCTNAGC 1 cut(s) 298
BlsI GCNGC 2 cut(s) 259, 459
Bme1390I CCNGG 1 cut(s) 567
Bme18I GGWCC 2 cut(s) 226, 569
BmeT110I CYCGRG 1 cut(s) 238
BmgT120I GGNCC 2 cut(s) 226, 569
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 567
BmsI GCATC 2 cut(s) 567, 631
BpiI GAAGAC 2 cut(s) 94, 166
Bpu1102I GCTNAGC 1 cut(s) 298
BpuEI CTTGAG 1 cut(s) 749
BsaJI CCNNGG 3 cut(s) 237, 565, 685
Bsc4I CCNNNNNNNGG 2 cut(s) 340, 691
Bse1I ACTGG 1 cut(s) 555
BseBI CCWGG 1 cut(s) 567
BseDI CCNNGG 3 cut(s) 237, 565, 685
BseGI GGATG 1 cut(s) 821
BseLI CCNNNNNNNGG 2 cut(s) 340, 691
BseMII CTCAG 2 cut(s) 192, 312
BseNI ACTGG 1 cut(s) 555
BseRI GAGGAG 3 cut(s) 117, 226, 344
BseSI GKGCMC 1 cut(s) 599
BseXI GCAGC 1 cut(s) 444
BseYI CCCAGC 1 cut(s) 493
Bsh1236I CGCG 1 cut(s) 260
Bsh1285I CGRYCG 1 cut(s) 406
BsiEI CGRYCG 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 352
BsiHKCI CYCGRG 1 cut(s) 238
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 2 cut(s) 340, 691
BsmAI GTCTC 2 cut(s) 238, 625
BsmBI CGTCTC 1 cut(s) 625
BsmFI GGGAC 1 cut(s) 404
BsoBI CYCGRG 1 cut(s) 238
Bsp1286I GDGCHC 2 cut(s) 352, 599
Bsp1407I TGTACA 1 cut(s) 640
Bsp143I GATC 2 cut(s) 153, 601
Bsp1720I GCTNAGC 1 cut(s) 298
BspACI CCGC 2 cut(s) 258, 406
BspCNI CTCAG 2 cut(s) 191, 311
BspFNI CGCG 1 cut(s) 260
BspLI GGNNCC 1 cut(s) 244
BspPI GGATC 1 cut(s) 596
BsrGI TGTACA 1 cut(s) 640
BsrI ACTGG 1 cut(s) 555
BssECI CCNNGG 3 cut(s) 237, 565, 685
BssMI GATC 2 cut(s) 153, 601
BssNAI GTATAC 1 cut(s) 901
BssSI CACGAG 1 cut(s) 316
Bst1107I GTATAC 1 cut(s) 901
Bst2BI CACGAG 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 567
Bst4CI ACNGT 6 cut(s) 10, 151, 251, 271, 705, 809
Bst6I CTCTTC 1 cut(s) 78
BstAUI TGTACA 1 cut(s) 640
BstDEI CTNAG 4 cut(s) 116, 178, 298, 500
BstDSI CCRYGG 1 cut(s) 685
BstF5I GGATG 1 cut(s) 821
BstFNI CGCG 1 cut(s) 260
BstKTI GATC 2 cut(s) 156, 604
BstMAI GTCTC 2 cut(s) 238, 625
BstMBI GATC 2 cut(s) 153, 601
BstMCI CGRYCG 1 cut(s) 406
BstNI CCWGG 1 cut(s) 567
BstSCI CCNGG 1 cut(s) 565
BstSLI GKGCMC 1 cut(s) 599
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 444
BstV2I GAAGAC 2 cut(s) 94, 166
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
BstZ17I GTATAC 1 cut(s) 901
BtgI CCRYGG 1 cut(s) 685
BtgZI GCGATG 1 cut(s) 706
BtsCI GGATG 1 cut(s) 821
BtsIMutI CAGTG 3 cut(s) 200, 572, 814
Cfr13I GGNCC 2 cut(s) 226, 569
Csp6I GTAC 4 cut(s) 219, 641, 713, 911
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 3 cut(s) 517, 761, 863
CviQI GTAC 4 cut(s) 219, 641, 713, 911
DdeI CTNAG 4 cut(s) 116, 178, 298, 500
DpnI GATC 2 cut(s) 155, 603
DpnII GATC 2 cut(s) 153, 601
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco47I GGWCC 2 cut(s) 226, 569
Eco57I CTGAAG 2 cut(s) 59, 788
Eco88I CYCGRG 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 565
Esp3I CGTCTC 1 cut(s) 625
FaeI CATG 3 cut(s) 520, 764, 866
FaiI YATR 9 cut(s) 48, 509, 518, 522, 701, 762, 776, 864, 901
FaqI GGGAC 1 cut(s) 404
FatI CATG 3 cut(s) 516, 760, 862
FbaI TGATCA 1 cut(s) 153
FblI GTMKAC 2 cut(s) 557, 900
Fnu4HI GCNGC 2 cut(s) 258, 458
FokI GGATG 1 cut(s) 828
Fsp4HI GCNGC 2 cut(s) 258, 458
FspBI CTAG 4 cut(s) 164, 170, 230, 437
GluI GCNGC 2 cut(s) 258, 458
GsaI CCCAGC 1 cut(s) 497
Hin1II CATG 3 cut(s) 520, 764, 866
HincII GTYRAC 1 cut(s) 215
HindII GTYRAC 1 cut(s) 215
HinfI GANTC 5 cut(s) 62, 329, 659, 749, 788
HphI GGTGA 3 cut(s) 163, 304, 434
Hpy166II GTNNAC 4 cut(s) 215, 361, 558, 901
Hpy188I TCNGA 3 cut(s) 181, 709, 768
Hpy188III TCNNGA 4 cut(s) 66, 81, 102, 240
Hpy8I GTNNAC 4 cut(s) 215, 361, 558, 901
Hpy99I CGWCG 3 cut(s) 251, 341, 404
HpyAV CCTTC 3 cut(s) 143, 869, 910
HpyCH4III ACNGT 6 cut(s) 10, 151, 251, 271, 705, 809
HpyCH4IV ACGT 2 cut(s) 217, 469
HpyCH4V TGCA 1 cut(s) 524
HpyF3I CTNAG 4 cut(s) 116, 178, 298, 500
HpySE526I ACGT 2 cut(s) 217, 469
Hsp92II CATG 3 cut(s) 520, 764, 866
Ksp22I TGATCA 1 cut(s) 153
Kzo9I GATC 2 cut(s) 153, 601
LmnI GCTCC 4 cut(s) 34, 242, 490, 685
Lsp1109I GCAGC 1 cut(s) 444
LweI GCATC 2 cut(s) 567, 631
MaeI CTAG 4 cut(s) 164, 170, 230, 437
MaeII ACGT 2 cut(s) 217, 469
MaeIII GTNAC 3 cut(s) 271, 422, 803
MalI GATC 2 cut(s) 155, 603
MboI GATC 2 cut(s) 153, 601
MboII GAAGA 3 cut(s) 65, 99, 166
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 2 cut(s) 352, 599
MluCI AATT 5 cut(s) 673, 743, 858, 869, 885
MseI TTAA 4 cut(s) 146, 486, 543, 612
MslI CAYNNNNRTG 1 cut(s) 777
MspR9I CCNGG 1 cut(s) 567
MvaI CCWGG 1 cut(s) 567
MvnI CGCG 1 cut(s) 260
NdeII GATC 2 cut(s) 153, 601
NlaIII CATG 3 cut(s) 520, 764, 866
NlaIV GGNNCC 1 cut(s) 244
NmuCI GTSAC 2 cut(s) 422, 803
PcsI WCGNNNNNNNCGW 1 cut(s) 792
PfeI GAWTC 5 cut(s) 62, 329, 659, 749, 788
PkrI GCNGC 2 cut(s) 259, 459
PsiI TTATAA 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 565
PspFI CCCAGC 1 cut(s) 493
PspGI CCWGG 1 cut(s) 565
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 2 cut(s) 226, 569
PsuI RGATCY 1 cut(s) 601
RsaI GTAC 4 cut(s) 220, 642, 714, 912
RsaNI GTAC 4 cut(s) 219, 641, 713, 911
RseI CAYNNNNRTG 1 cut(s) 777
SaqAI TTAA 4 cut(s) 146, 486, 543, 612
SatI GCNGC 2 cut(s) 258, 458
Sau3AI GATC 2 cut(s) 153, 601
Sau96I GGNCC 2 cut(s) 226, 569
ScrFI CCNGG 1 cut(s) 567
SduI GDGCHC 2 cut(s) 352, 599
SfaNI GCATC 2 cut(s) 567, 631
SinI GGWCC 2 cut(s) 226, 569
SmiMI CAYNNNNRTG 1 cut(s) 777
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
Sse9I AATT 5 cut(s) 673, 743, 858, 869, 885
SsiI CCGC 2 cut(s) 258, 406
SspMI CTAG 4 cut(s) 164, 170, 230, 437
StyD4I CCNGG 1 cut(s) 565
TaaI ACNGT 6 cut(s) 10, 151, 251, 271, 705, 809
TaiI ACGT 2 cut(s) 220, 472
TaqI TCGA 2 cut(s) 101, 786
TaqII GACCGA 1 cut(s) 214
TasI AATT 5 cut(s) 673, 743, 858, 869, 885
TatI WGTACW 3 cut(s) 640, 712, 910
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 5 cut(s) 62, 329, 659, 749, 788
Tru1I TTAA 4 cut(s) 146, 486, 543, 612
Tru9I TTAA 4 cut(s) 146, 486, 543, 612
TscAI CASTG 3 cut(s) 200, 579, 814
TseFI GTSAC 2 cut(s) 422, 803
TseI GCWGC 1 cut(s) 457
Tsp45I GTSAC 2 cut(s) 422, 803
TspDTI ATGAA 3 cut(s) 505, 795, 851
TspGWI ACGGA 3 cut(s) 594, 702, 863
TspRI CASTG 3 cut(s) 200, 579, 814
VpaK11BI GGWCC 2 cut(s) 226, 569
XapI RAATTY 3 cut(s) 858, 869, 885
XcmI CCANNNNNNNNNTGG 1 cut(s) 341
XmiI GTMKAC 2 cut(s) 557, 900
XspI CTAG 4 cut(s) 164, 170, 230, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.