RLG00000028606

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0011176
Physical Location & Seq
Reverse (-)
24962809 .. 24964728
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028606

Sequence Viewer

Length: 1092 bp
ATGCCCGCCATCTTAGCTGCTACAGCTAACGCTTCCAGAGAGAGCGATAAGATTAGGCCTTGCTCAGAGTTGTTATATTCGACAATGAACCATAGAATGGCATCTTTAGCTCGAGCTCCGTTCATGATATCTACCAATACTGTTCCCAGACTCCATATCCGAACCCTGAACTTGTTAAAAAGCTCAAATTCAGTACATTTACACACTTTCCCTCACATTCAGATAAAAATTCCCCCTGTTTGCTGCACAAAACTGTCTTCCTGGGATCCCTCATCTGACACATACGCCCCCACGGACAGTGCCAATGATAACTTTTTGAATAAAACCACCAACATATTTGAAACCCTTTCCTCTGCTACCACTGCTGAAGCACCAGATCCCAACAGTGAAAAGCTTAATGGCGCAAGTAATCAGACAGGAACCGAGCTTCAGGTACTCAAATGGCCAATGTGGCTTCTGGGCCCTTCTTTTCTCCTCGTCACTGGCATGTTGCCAACACTGTGGCTACCAATATCTTCCATATTTCTTGGCACCAACATAGCAAGCCTACTTTCTTTGGTTGGACTCGATTGCATTTTTAATCTTGGTGCAACCCTTTTTCTCCTCATGGCTGATTCGATAGCCCGGCCTAAAAGTTCAGCACAAGCCTGCAAAAGCAAGCCTCCCTTTAGCTACAAGTTTTGGAATATAGTTGCAACTGTGACTGGATTAATCATCCCCCTGATAATGGCTTATGGATCCCAACAGGGTTTCCTCCAACCCCAGTTGCCTCCCATCTCATTTGCAATTCTATTGGGTCCCTATCTTCTGCTTATTGCAGTACAGATTGTGACTGAGATGCTGACTTGGAATTGGCAGTCACCAGTTTGGCTGGTAACCCCTGTGGTTTATGAGGGTTACCGTTTGTTGCAGCTGATGAGAGGCTTGAAGCTTGGAACTGAAATCATTGCACCAGCATGGATGATGTATACAATTAGAGGACTGGTGTCCTGGTGGGTTCTGATTCTTGGTATGCAGTTGATGAGGGTTGCTTGGTTTGCAGGCTTCGCTAGTCGATATCGTCAGCAACCGTCGCCTCCTGGTGATACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

364

Amino Acids

40.19

Weight (kDa)

9.21

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60590 AT3G60590 AT3G60590 AT3G60590
fragaria_vesca FvH4_7g11080 FvH4_7g11080
malus_domestica MD07G1115500.v1.1
prunus_persica Prupe.2G138000_v2.0.a1
pyrus_communis pycom07g10900
rosa_chinensis RchiOBHm_Chr1g0349101
rosa_laevigata RLG00000028606
rosa_multiflora Rmu_sc0008324.1_g000003 Rmu_sc0012100.1_g000004
rosa_roxburghii Rroxscaffold_4G00306120
rosa_rugosa Rorug01G0200100
rosa_samantha Rh1AG217800 Rh1BG183300 Rh1CG202200 Rh1DG213100
rosa_wichuraiana Rw1G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 530
AccB7I CCANNNNNTGG 1 cut(s) 97
AccI GTMKAC 1 cut(s) 968
AciI CCGC 1 cut(s) 6
AclWI GGATC 5 cut(s) 260, 273, 371, 732, 745
AcoI YGGCCR 1 cut(s) 443
AcsI RAATTY 2 cut(s) 187, 228
AcuI CTGAAG 2 cut(s) 387, 413
AfaI GTAC 3 cut(s) 195, 435, 822
AfiI CCNNNNNNNGG 2 cut(s) 97, 727
AgsI TTSAA 3 cut(s) 319, 341, 928
AjnI CCWGG 3 cut(s) 260, 989, 1078
Alw21I GWGCWC 1 cut(s) 118
AlwI GGATC 5 cut(s) 260, 273, 371, 732, 745
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 4 cut(s) 56, 443, 460, 626
ApaI GGGCCC 1 cut(s) 464
ApeKI GCWGC 3 cut(s) 17, 243, 910
ApoI RAATTY 2 cut(s) 187, 228
AseI ATTAAT 1 cut(s) 710
AspLEI GCGC 1 cut(s) 404
AspS9I GGNCC 3 cut(s) 460, 461, 797
AsuC2I CCSGG 1 cut(s) 625
AsuHPI GGTGA 1 cut(s) 852
AvaI CYCGRG 1 cut(s) 111
AvaII GGWCC 1 cut(s) 797
BaeGI GKGCMC 1 cut(s) 464
BalI TGGCCA 1 cut(s) 445
BamHI GGATCC 2 cut(s) 265, 737
BanI GGYRCC 1 cut(s) 530
BanII GRGCYC 2 cut(s) 118, 464
BbsI GAAGAC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 3 cut(s) 4, 230, 922
BccI CCATC 2 cut(s) 17, 782
BciT130I CCWGG 3 cut(s) 262, 991, 1080
BcnI CCSGG 1 cut(s) 625
BfaI CTAG 1 cut(s) 1050
BfmI CTRYAG 1 cut(s) 21
BglI GCCNNNNNGGC 1 cut(s) 451
BisI GCNGC 3 cut(s) 18, 244, 911
BlsI GCNGC 3 cut(s) 19, 245, 912
Bme1390I CCNGG 4 cut(s) 262, 625, 991, 1080
Bme18I GGWCC 1 cut(s) 797
BmeT110I CYCGRG 1 cut(s) 111
BmgT120I GGNCC 3 cut(s) 460, 461, 797
BmiI GGNNCC 7 cut(s) 267, 421, 462, 532, 739, 798, 799
BmrFI CCNGG 4 cut(s) 262, 625, 991, 1080
BmrI ACTGGG 1 cut(s) 757
BmsI GCATC 2 cut(s) 110, 828
BmuI ACTGGG 1 cut(s) 757
BoxI GACNNNNGTC 1 cut(s) 985
BpiI GAAGAC 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 625
BsaJI CCNNGG 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 727
Bse1I ACTGG 5 cut(s) 487, 709, 763, 863, 987
Bse3DI GCAATG 1 cut(s) 945
BseBI CCWGG 3 cut(s) 262, 991, 1080
BseDI CCNNGG 2 cut(s) 261, 291
BseGI GGATG 2 cut(s) 714, 966
BseLI CCNNNNNNNGG 2 cut(s) 97, 727
BseMI GCAATG 1 cut(s) 945
BseMII CTCAG 2 cut(s) 78, 825
BseNI ACTGG 5 cut(s) 487, 709, 763, 863, 987
BseRI GAGGAG 2 cut(s) 464, 593
BseSI GKGCMC 1 cut(s) 464
BseXI GCAGC 3 cut(s) 4, 230, 922
BsgI GTGCAG 1 cut(s) 229
BshFI GGCC 4 cut(s) 58, 445, 462, 628
BshNI GGYRCC 1 cut(s) 530
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 1 cut(s) 625
BslFI GGGAC 1 cut(s) 783
BslI CCNNNNNNNGG 2 cut(s) 97, 727
BsmFI GGGAC 1 cut(s) 783
BsnI GGCC 4 cut(s) 58, 445, 462, 628
BsoBI CYCGRG 1 cut(s) 111
Bsp120I GGGCCC 1 cut(s) 460
Bsp1286I GDGCHC 2 cut(s) 118, 464
Bsp143I GATC 3 cut(s) 265, 376, 737
BspACI CCGC 1 cut(s) 6
BspANI GGCC 4 cut(s) 58, 445, 462, 628
BspCNI CTCAG 2 cut(s) 77, 826
BspHI TCATGA 1 cut(s) 123
BspLI GGNNCC 7 cut(s) 267, 421, 462, 532, 739, 798, 799
BspPI GGATC 5 cut(s) 260, 273, 371, 732, 745
BspT107I GGYRCC 1 cut(s) 530
BsrDI GCAATG 1 cut(s) 945
BsrI ACTGG 5 cut(s) 487, 709, 763, 863, 987
BssECI CCNNGG 2 cut(s) 261, 291
BssMI GATC 3 cut(s) 265, 376, 737
BssNAI GTATAC 1 cut(s) 969
Bst1107I GTATAC 1 cut(s) 969
Bst2UI CCWGG 3 cut(s) 262, 991, 1080
Bst4CI ACNGT 8 cut(s) 142, 255, 299, 386, 501, 700, 902, 1071
BstC8I GCNNGC 5 cut(s) 6, 544, 649, 659, 1042
BstDEI CTNAG 4 cut(s) 13, 64, 834, 1089
BstDSI CCRYGG 1 cut(s) 291
BstEII GGTNACC 2 cut(s) 874, 896
BstF5I GGATG 2 cut(s) 714, 966
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 3 cut(s) 268, 379, 740
BstMBI GATC 3 cut(s) 265, 376, 737
BstMWI GCNNNNNNNGC 8 cut(s) 14, 23, 107, 362, 451, 1037, 1046, 1072
BstNI CCWGG 3 cut(s) 262, 991, 1080
BstNSI RCATGY 1 cut(s) 490
BstPAI GACNNNNGTC 1 cut(s) 985
BstPI GGTNACC 2 cut(s) 874, 896
BstSCI CCNGG 4 cut(s) 260, 623, 989, 1078
BstSFI CTRYAG 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 464
BstV1I GCAGC 3 cut(s) 4, 230, 922
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 3 cut(s) 265, 376, 737
BstXI CCANNNNNNTGG 1 cut(s) 501
BstYI RGATCY 3 cut(s) 265, 376, 737
BstZ17I GTATAC 1 cut(s) 969
BsuRI GGCC 4 cut(s) 58, 445, 462, 628
BtgI CCRYGG 1 cut(s) 291
BtsCI GGATG 2 cut(s) 714, 966
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 5 cut(s) 304, 360, 391, 480, 497
Cac8I GCNNGC 5 cut(s) 6, 544, 649, 659, 1042
CciI TCATGA 1 cut(s) 123
CfoI GCGC 1 cut(s) 404
Cfr13I GGNCC 3 cut(s) 460, 461, 797
Csp6I GTAC 3 cut(s) 194, 434, 821
CviAII CATG 4 cut(s) 124, 487, 607, 957
CviQI GTAC 3 cut(s) 194, 434, 821
DdeI CTNAG 4 cut(s) 13, 64, 834, 1089
DpnI GATC 3 cut(s) 267, 378, 739
DpnII GATC 3 cut(s) 265, 376, 737
EaeI YGGCCR 1 cut(s) 443
Ecl136II GAGCTC 1 cut(s) 116
Eco147I AGGCCT 1 cut(s) 58
Eco24I GRGCYC 2 cut(s) 118, 464
Eco32I GATATC 2 cut(s) 129, 1058
Eco47I GGWCC 1 cut(s) 797
Eco53kI GAGCTC 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 387, 413
Eco88I CYCGRG 1 cut(s) 111
Eco91I GGTNACC 2 cut(s) 874, 896
EcoICRI GAGCTC 1 cut(s) 116
EcoO109I RGGNCCY 2 cut(s) 461, 797
EcoO65I GGTNACC 2 cut(s) 874, 896
EcoRII CCWGG 3 cut(s) 260, 989, 1078
EcoRV GATATC 2 cut(s) 129, 1058
EcoT38I GRGCYC 2 cut(s) 118, 464
FaeI CATG 4 cut(s) 127, 490, 610, 960
FalI AAGNNNNNCTT 2 cut(s) 650, 682
FaqI GGGAC 1 cut(s) 783
FatI CATG 4 cut(s) 123, 486, 606, 956
FauI CCCGC 1 cut(s) 13
FblI GTMKAC 1 cut(s) 968
Fnu4HI GCNGC 3 cut(s) 18, 244, 911
FokI GGATG 2 cut(s) 701, 973
FriOI GRGCYC 2 cut(s) 118, 464
Fsp4HI GCNGC 3 cut(s) 18, 244, 911
FspBI CTAG 1 cut(s) 1050
GlaI GCGC 1 cut(s) 403
GluI GCNGC 3 cut(s) 18, 244, 911
HaeIII GGCC 4 cut(s) 58, 445, 462, 628
HapII CCGG 1 cut(s) 625
HhaI GCGC 1 cut(s) 404
Hin1II CATG 4 cut(s) 127, 490, 610, 960
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HindIII AAGCTT 2 cut(s) 392, 929
HinfI GANTC 4 cut(s) 150, 564, 614, 1003
HpaII CCGG 1 cut(s) 625
HphI GGTGA 1 cut(s) 852
Hpy166II GTNNAC 1 cut(s) 969
Hpy188I TCNGA 6 cut(s) 67, 161, 222, 277, 414, 1002
Hpy188III TCNNGA 2 cut(s) 36, 124
Hpy8I GTNNAC 1 cut(s) 969
Hpy99I CGWCG 1 cut(s) 1075
HpyAV CCTTC 1 cut(s) 474
HpyCH4III ACNGT 8 cut(s) 142, 255, 299, 386, 501, 700, 902, 1071
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 23, 107, 362, 451, 1037, 1046, 1072
HpyF3I CTNAG 4 cut(s) 13, 64, 834, 1089
Hsp92II CATG 4 cut(s) 127, 490, 610, 960
HspAI GCGC 1 cut(s) 402
KflI GGGWCCC 1 cut(s) 797
Kzo9I GATC 3 cut(s) 265, 376, 737
LmnI GCTCC 1 cut(s) 121
Lsp1109I GCAGC 3 cut(s) 4, 230, 922
LweI GCATC 2 cut(s) 110, 828
MaeI CTAG 1 cut(s) 1050
MaeIII GTNAC 6 cut(s) 478, 700, 829, 858, 874, 896
MalI GATC 3 cut(s) 267, 378, 739
MboI GATC 3 cut(s) 265, 376, 737
MboII GAAGA 3 cut(s) 249, 507, 797
MflI RGATCY 3 cut(s) 265, 376, 737
MhlI GDGCHC 2 cut(s) 118, 464
MlsI TGGCCA 1 cut(s) 445
MluCI AATT 5 cut(s) 187, 228, 786, 850, 972
MluNI TGGCCA 1 cut(s) 445
MlyI GAGTC 2 cut(s) 144, 558
MmeI TCCRAC 2 cut(s) 541, 781
Mox20I TGGCCA 1 cut(s) 445
MscI TGGCCA 1 cut(s) 445
MseI TTAA 4 cut(s) 176, 396, 579, 710
MslI CAYNNNNRTG 2 cut(s) 485, 955
Msp20I TGGCCA 1 cut(s) 445
MspA1I CMGCKG 1 cut(s) 913
MspI CCGG 1 cut(s) 625
MspR9I CCNGG 4 cut(s) 262, 625, 991, 1080
MvaI CCWGG 3 cut(s) 262, 991, 1080
MwoI GCNNNNNNNGC 8 cut(s) 14, 23, 107, 362, 451, 1037, 1046, 1072
NciI CCSGG 1 cut(s) 625
NdeII GATC 3 cut(s) 265, 376, 737
NlaIII CATG 4 cut(s) 127, 490, 610, 960
NlaIV GGNNCC 7 cut(s) 267, 421, 462, 532, 739, 798, 799
NmuCI GTSAC 4 cut(s) 478, 700, 829, 858
NspI RCATGY 1 cut(s) 490
PaeR7I CTCGAG 1 cut(s) 111
PagI TCATGA 1 cut(s) 123
PceI AGGCCT 1 cut(s) 58
PfeI GAWTC 2 cut(s) 614, 1003
PflMI CCANNNNNTGG 1 cut(s) 97
PkrI GCNGC 3 cut(s) 19, 245, 912
PleI GAGTC 2 cut(s) 144, 558
PpsI GAGTC 2 cut(s) 144, 558
PpuMI RGGWCCY 1 cut(s) 797
PshAI GACNNNNGTC 1 cut(s) 985
PshBI ATTAAT 1 cut(s) 710
Psp124BI GAGCTC 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 797
Psp6I CCWGG 3 cut(s) 260, 989, 1078
PspEI GGTNACC 2 cut(s) 874, 896
PspGI CCWGG 3 cut(s) 260, 989, 1078
PspN4I GGNNCC 7 cut(s) 267, 421, 462, 532, 739, 798, 799
PspOMI GGGCCC 1 cut(s) 460
PspPI GGNCC 3 cut(s) 460, 461, 797
PspPPI RGGWCCY 1 cut(s) 797
PspXI VCTCGAGB 1 cut(s) 111
PsuI RGATCY 3 cut(s) 265, 376, 737
PvuII CAGCTG 1 cut(s) 913
RsaI GTAC 3 cut(s) 195, 435, 822
RsaNI GTAC 3 cut(s) 194, 434, 821
RseI CAYNNNNRTG 2 cut(s) 485, 955
SacI GAGCTC 1 cut(s) 118
SaqAI TTAA 4 cut(s) 176, 396, 579, 710
SatI GCNGC 3 cut(s) 18, 244, 911
Sau3AI GATC 3 cut(s) 265, 376, 737
Sau96I GGNCC 3 cut(s) 460, 461, 797
SchI GAGTC 2 cut(s) 144, 558
ScrFI CCNGG 4 cut(s) 262, 625, 991, 1080
SduI GDGCHC 2 cut(s) 118, 464
SfaNI GCATC 2 cut(s) 110, 828
SfcI CTRYAG 1 cut(s) 21
Sfr274I CTCGAG 1 cut(s) 111
SinI GGWCC 1 cut(s) 797
SlaI CTCGAG 1 cut(s) 111
SmiMI CAYNNNNRTG 2 cut(s) 485, 955
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
Sse9I AATT 5 cut(s) 187, 228, 786, 850, 972
SseBI AGGCCT 1 cut(s) 58
SsiI CCGC 1 cut(s) 6
SspMI CTAG 1 cut(s) 1050
SstI GAGCTC 1 cut(s) 118
StuI AGGCCT 1 cut(s) 58
StyD4I CCNGG 4 cut(s) 260, 623, 989, 1078
TaaI ACNGT 8 cut(s) 142, 255, 299, 386, 501, 700, 902, 1071
TaqI TCGA 5 cut(s) 80, 112, 567, 617, 1054
TasI AATT 5 cut(s) 187, 228, 786, 850, 972
TatI WGTACW 2 cut(s) 193, 820
TfiI GAWTC 2 cut(s) 614, 1003
Tru1I TTAA 4 cut(s) 176, 396, 579, 710
Tru9I TTAA 4 cut(s) 176, 396, 579, 710
TscAI CASTG 5 cut(s) 304, 367, 391, 487, 504
TseFI GTSAC 4 cut(s) 478, 700, 829, 858
TseI GCWGC 3 cut(s) 17, 243, 910
Tsp45I GTSAC 4 cut(s) 478, 700, 829, 858
TspDTI ATGAA 2 cut(s) 101, 112
TspGWI ACGGA 2 cut(s) 108, 308
TspRI CASTG 5 cut(s) 304, 367, 391, 487, 504
Van91I CCANNNNNTGG 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 797
VspI ATTAAT 1 cut(s) 710
XapI RAATTY 2 cut(s) 187, 228
XceI RCATGY 1 cut(s) 490
XhoI CTCGAG 1 cut(s) 111
XmiI GTMKAC 1 cut(s) 968
XspI CTAG 1 cut(s) 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.