Rh1BG183300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011176
Physical Location & Seq
Forward (+)
29289806 .. 29290864
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG183300.1

Sequence Viewer

Length: 1059 bp
ATGTTTCAGAGCGATAAGAGTAGGCCTTGCTCGAAGTTGTTATATTCGACAATGAACCATAGAATGGCATCTTTAGCTAGAGCTCCGTTCATGATGCCTACCAATACTGTTCCCAGACTCCATATCCGAACCCTGAACTTGTTAAAAAGCTCAAACTCAGTACATTTACACACTTTCCCTCACATTCAGATAAAAAGTCCCCCTGTTTGCTGCACAAAACTGTCTTCCTGGGATCCCTCATCTGACACATACGCCCCCACAGACAGTGCCAGTGATAACTTTTTGAATAAAACCACCAACATATTTGAAACCCTTTCCTCTGCTGCCACTGCCGAAGCACCAGATACCAACAGTGAAAAGCTTAATGGCACAAGTAATCAGACAGGAACCGAGCTTCAGGTCCTCAAATGGCCAATGTGGCTTCTGGGCCCTTCTTTTCTCCTCCTCACTGGCATGTTGCCAACACTGTGGCTACCAATATCTTCCATATTTCTTGGCCCCAACATAGCAAGCCTACTTGCTTTGGTTGGACTCGATTGCATTTTTAATCTTGGTGCAACCCTTTTTCTCCTCATGGCTGATTCGATAGCCCGGCCTAAAAGTTCAGCACAGGCCTGCAAAAGCAAACCTCCCTTTAGCTACAAGTTTTGGAATATAGTTGCAACTGTGACTGGATTTATCATTCCCCTGATGATGGCTTATGGATCCCAACAAGGTTTCCTCCAACCCCAGTTGCCTCCCATCTCATTTGCAGTTCTATTGGGTCCCTATCTTCTGCTTATCGCAGTACAGATTCTGACTGAGATGCTGACTTGGAATTGGCAGTCACCGGTTTGGCTGGTAACCCCTGTGGTTTATGAGGGTTACCGTTTGTTGCAGCTGATGAGAGGATTGAAGCTTGGAACTGAAATCATGGCACCAGCATGGATGATGCATACAATTAGAGGACTGGTGTCCTGGTGGGTTCTGATTCTTGGTATGCAGTTGATGAGGGTTGCTTGGTTTGCAGGCTTCGCTAGTCGATATCGTCAGCAACCGTCGCCTCCTGGTGATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

352

Amino Acids

39.2

Weight (kDa)

9.42

Isoelectric Point (pI)

48.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60590 AT3G60590 AT3G60590 AT3G60590
fragaria_vesca FvH4_7g11080 FvH4_7g11080
malus_domestica MD07G1115500.v1.1
prunus_persica Prupe.2G138000_v2.0.a1
pyrus_communis pycom07g10900
rosa_chinensis RchiOBHm_Chr1g0349101
rosa_laevigata RLG00000028606
rosa_multiflora Rmu_sc0008324.1_g000003 Rmu_sc0012100.1_g000004
rosa_roxburghii Rroxscaffold_4G00306120
rosa_rugosa Rorug01G0200100
rosa_samantha Rh1AG217800 Rh1BG183300 Rh1CG202200 Rh1DG213100
rosa_wichuraiana Rw1G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 916
AccB7I CCANNNNNTGG 1 cut(s) 64
AclWI GGATC 4 cut(s) 227, 240, 699, 712
AcoI YGGCCR 1 cut(s) 410
AcuI CTGAAG 1 cut(s) 380
AfaI GTAC 2 cut(s) 162, 789
AfiI CCNNNNNNNGG 2 cut(s) 64, 694
AgeI ACCGGT 1 cut(s) 829
AgsI TTSAA 3 cut(s) 286, 308, 895
AjnI CCWGG 3 cut(s) 227, 956, 1045
AluBI AGCT 8 cut(s) 77, 83, 150, 361, 394, 639, 880, 898
AluI AGCT 8 cut(s) 77, 83, 150, 361, 394, 639, 880, 898
Alw21I GWGCWC 1 cut(s) 85
AlwI GGATC 4 cut(s) 227, 240, 699, 712
AlwNI CAGNNNCTG 1 cut(s) 796
AoxI GGCC 6 cut(s) 23, 410, 427, 496, 593, 612
ApaI GGGCCC 1 cut(s) 431
ApeKI GCWGC 3 cut(s) 210, 323, 877
AsiGI ACCGGT 1 cut(s) 829
AspS9I GGNCC 5 cut(s) 400, 427, 428, 497, 764
AsuC2I CCSGG 1 cut(s) 592
AsuHPI GGTGA 1 cut(s) 819
AvaII GGWCC 2 cut(s) 400, 764
BaeGI GKGCMC 1 cut(s) 431
BalI TGGCCA 1 cut(s) 412
BamHI GGATCC 2 cut(s) 232, 704
BanI GGYRCC 1 cut(s) 916
BanII GRGCYC 2 cut(s) 85, 431
BbsI GAAGAC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 3 cut(s) 197, 310, 889
BccI CCATC 2 cut(s) 688, 749
BciT130I CCWGG 3 cut(s) 229, 958, 1047
BcnI CCSGG 1 cut(s) 592
BfaI CTAG 2 cut(s) 78, 1017
BglI GCCNNNNNGGC 1 cut(s) 418
BisI GCNGC 3 cut(s) 211, 324, 878
BlsI GCNGC 3 cut(s) 212, 325, 879
Bme1390I CCNGG 4 cut(s) 229, 592, 958, 1047
Bme18I GGWCC 2 cut(s) 400, 764
BmgT120I GGNCC 5 cut(s) 400, 427, 428, 497, 764
BmiI GGNNCC 8 cut(s) 234, 388, 429, 499, 706, 765, 766, 918
BmrFI CCNGG 4 cut(s) 229, 592, 958, 1047
BmrI ACTGGG 1 cut(s) 724
BmsI GCATC 4 cut(s) 77, 84, 795, 921
BmuI ACTGGG 1 cut(s) 724
BoxI GACNNNNGTC 1 cut(s) 952
BpiI GAAGAC 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 592
BsaJI CCNNGG 1 cut(s) 228
BsaWI WCCGGW 1 cut(s) 829
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 694
Bse118I RCCGGY 1 cut(s) 829
Bse1I ACTGG 5 cut(s) 270, 454, 676, 730, 954
BseBI CCWGG 3 cut(s) 229, 958, 1047
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 933
BseLI CCNNNNNNNGG 2 cut(s) 64, 694
BseMII CTCAG 2 cut(s) 171, 792
BseNI ACTGG 5 cut(s) 270, 454, 676, 730, 954
BseRI GAGGAG 3 cut(s) 431, 434, 560
BseSI GKGCMC 1 cut(s) 431
BseXI GCAGC 3 cut(s) 197, 310, 889
BsgI GTGCAG 1 cut(s) 196
BshFI GGCC 6 cut(s) 25, 412, 429, 498, 595, 614
BshNI GGYRCC 1 cut(s) 916
BshTI ACCGGT 1 cut(s) 829
BsiHKAI GWGCWC 1 cut(s) 85
BsiSI CCGG 2 cut(s) 592, 830
BslFI GGGAC 2 cut(s) 183, 750
BslI CCNNNNNNNGG 2 cut(s) 64, 694
BsmFI GGGAC 2 cut(s) 183, 750
BsnI GGCC 6 cut(s) 25, 412, 429, 498, 595, 614
Bsp120I GGGCCC 1 cut(s) 427
Bsp1286I GDGCHC 2 cut(s) 85, 431
Bsp143I GATC 2 cut(s) 232, 704
BspANI GGCC 6 cut(s) 25, 412, 429, 498, 595, 614
BspCNI CTCAG 2 cut(s) 170, 793
BspHI TCATGA 1 cut(s) 90
BspLI GGNNCC 8 cut(s) 234, 388, 429, 499, 706, 765, 766, 918
BspPI GGATC 4 cut(s) 227, 240, 699, 712
BspT107I GGYRCC 1 cut(s) 916
BsrFI RCCGGY 1 cut(s) 829
BsrI ACTGG 5 cut(s) 270, 454, 676, 730, 954
BssAI RCCGGY 1 cut(s) 829
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 2 cut(s) 232, 704
Bst2UI CCWGG 3 cut(s) 229, 958, 1047
Bst4CI ACNGT 8 cut(s) 109, 222, 266, 353, 468, 667, 869, 1038
BstC8I GCNNGC 3 cut(s) 511, 616, 1009
BstDEI CTNAG 2 cut(s) 157, 801
BstEII GGTNACC 2 cut(s) 841, 863
BstF5I GGATG 1 cut(s) 933
BstKTI GATC 2 cut(s) 235, 707
BstMBI GATC 2 cut(s) 232, 704
BstMWI GCNNNNNNNGC 6 cut(s) 74, 329, 418, 1004, 1013, 1039
BstNI CCWGG 3 cut(s) 229, 958, 1047
BstNSI RCATGY 1 cut(s) 457
BstPAI GACNNNNGTC 1 cut(s) 952
BstPI GGTNACC 2 cut(s) 841, 863
BstSCI CCNGG 4 cut(s) 227, 590, 956, 1045
BstSLI GKGCMC 1 cut(s) 431
BstV1I GCAGC 3 cut(s) 197, 310, 889
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 2 cut(s) 232, 704
BstXI CCANNNNNNTGG 1 cut(s) 468
BstYI RGATCY 2 cut(s) 232, 704
BsuRI GGCC 6 cut(s) 25, 412, 429, 498, 595, 614
BtsCI GGATG 1 cut(s) 933
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 6 cut(s) 271, 277, 327, 358, 447, 464
Cac8I GCNNGC 3 cut(s) 511, 616, 1009
CaiI CAGNNNCTG 1 cut(s) 796
CciI TCATGA 1 cut(s) 90
Cfr10I RCCGGY 1 cut(s) 829
Cfr13I GGNCC 5 cut(s) 400, 427, 428, 497, 764
Csp6I GTAC 2 cut(s) 161, 788
CspAI ACCGGT 1 cut(s) 829
CviAII CATG 5 cut(s) 91, 454, 574, 913, 924
CviQI GTAC 2 cut(s) 161, 788
DdeI CTNAG 2 cut(s) 157, 801
DpnI GATC 2 cut(s) 234, 706
DpnII GATC 2 cut(s) 232, 704
EaeI YGGCCR 1 cut(s) 410
Ecl136II GAGCTC 1 cut(s) 83
Eco147I AGGCCT 2 cut(s) 25, 614
Eco24I GRGCYC 2 cut(s) 85, 431
Eco32I GATATC 1 cut(s) 1025
Eco47I GGWCC 2 cut(s) 400, 764
Eco53kI GAGCTC 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 380
Eco91I GGTNACC 2 cut(s) 841, 863
EcoICRI GAGCTC 1 cut(s) 83
EcoO109I RGGNCCY 3 cut(s) 400, 428, 764
EcoO65I GGTNACC 2 cut(s) 841, 863
EcoRII CCWGG 3 cut(s) 227, 956, 1045
EcoRV GATATC 1 cut(s) 1025
EcoT22I ATGCAT 1 cut(s) 936
EcoT38I GRGCYC 2 cut(s) 85, 431
FaeI CATG 5 cut(s) 94, 457, 577, 916, 927
FaqI GGGAC 2 cut(s) 183, 750
FatI CATG 5 cut(s) 90, 453, 573, 912, 923
Fnu4HI GCNGC 3 cut(s) 211, 324, 878
FokI GGATG 1 cut(s) 940
FriOI GRGCYC 2 cut(s) 85, 431
Fsp4HI GCNGC 3 cut(s) 211, 324, 878
FspBI CTAG 2 cut(s) 78, 1017
GluI GCNGC 3 cut(s) 211, 324, 878
HaeIII GGCC 6 cut(s) 25, 412, 429, 498, 595, 614
HapII CCGG 2 cut(s) 592, 830
Hin1II CATG 5 cut(s) 94, 457, 577, 916, 927
HindIII AAGCTT 2 cut(s) 359, 896
HinfI GANTC 5 cut(s) 117, 531, 581, 793, 970
HpaII CCGG 2 cut(s) 592, 830
HphI GGTGA 1 cut(s) 819
Hpy188I TCNGA 7 cut(s) 9, 128, 189, 244, 381, 798, 969
Hpy188III TCNNGA 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 1042
HpyAV CCTTC 1 cut(s) 441
HpyCH4III ACNGT 8 cut(s) 109, 222, 266, 353, 468, 667, 869, 1038
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 329, 418, 1004, 1013, 1039
HpyF3I CTNAG 2 cut(s) 157, 801
Hsp92II CATG 5 cut(s) 94, 457, 577, 916, 927
KflI GGGWCCC 1 cut(s) 764
Kzo9I GATC 2 cut(s) 232, 704
LmnI GCTCC 1 cut(s) 88
Lsp1109I GCAGC 3 cut(s) 197, 310, 889
LweI GCATC 4 cut(s) 77, 84, 795, 921
MaeI CTAG 2 cut(s) 78, 1017
MaeIII GTNAC 4 cut(s) 667, 825, 841, 863
MalI GATC 2 cut(s) 234, 706
MboI GATC 2 cut(s) 232, 704
MboII GAAGA 3 cut(s) 216, 474, 764
MflI RGATCY 2 cut(s) 232, 704
MhlI GDGCHC 2 cut(s) 85, 431
MlsI TGGCCA 1 cut(s) 412
MluCI AATT 3 cut(s) 817, 939, 1054
MluNI TGGCCA 1 cut(s) 412
MlyI GAGTC 2 cut(s) 111, 525
MmeI TCCRAC 2 cut(s) 508, 748
Mox20I TGGCCA 1 cut(s) 412
Mph1103I ATGCAT 1 cut(s) 936
MscI TGGCCA 1 cut(s) 412
MseI TTAA 3 cut(s) 143, 363, 546
MslI CAYNNNNRTG 2 cut(s) 452, 922
Msp20I TGGCCA 1 cut(s) 412
MspA1I CMGCKG 1 cut(s) 880
MspI CCGG 2 cut(s) 592, 830
MspR9I CCNGG 4 cut(s) 229, 592, 958, 1047
MvaI CCWGG 3 cut(s) 229, 958, 1047
MwoI GCNNNNNNNGC 6 cut(s) 74, 329, 418, 1004, 1013, 1039
NciI CCSGG 1 cut(s) 592
NdeII GATC 2 cut(s) 232, 704
NlaIII CATG 5 cut(s) 94, 457, 577, 916, 927
NlaIV GGNNCC 8 cut(s) 234, 388, 429, 499, 706, 765, 766, 918
NmuCI GTSAC 2 cut(s) 667, 825
NsiI ATGCAT 1 cut(s) 936
NspI RCATGY 1 cut(s) 457
PagI TCATGA 1 cut(s) 90
PceI AGGCCT 2 cut(s) 25, 614
PfeI GAWTC 3 cut(s) 581, 793, 970
PflMI CCANNNNNTGG 1 cut(s) 64
PinAI ACCGGT 1 cut(s) 829
PkrI GCNGC 3 cut(s) 212, 325, 879
PleI GAGTC 2 cut(s) 111, 525
PpsI GAGTC 2 cut(s) 111, 525
PpuMI RGGWCCY 2 cut(s) 400, 764
PshAI GACNNNNGTC 1 cut(s) 952
Psp124BI GAGCTC 1 cut(s) 85
Psp5II RGGWCCY 2 cut(s) 400, 764
Psp6I CCWGG 3 cut(s) 227, 956, 1045
PspEI GGTNACC 2 cut(s) 841, 863
PspGI CCWGG 3 cut(s) 227, 956, 1045
PspN4I GGNNCC 8 cut(s) 234, 388, 429, 499, 706, 765, 766, 918
PspOMI GGGCCC 1 cut(s) 427
PspPI GGNCC 5 cut(s) 400, 427, 428, 497, 764
PspPPI RGGWCCY 2 cut(s) 400, 764
PstNI CAGNNNCTG 1 cut(s) 796
PsuI RGATCY 2 cut(s) 232, 704
PvuII CAGCTG 1 cut(s) 880
RsaI GTAC 2 cut(s) 162, 789
RsaNI GTAC 2 cut(s) 161, 788
RseI CAYNNNNRTG 2 cut(s) 452, 922
SacI GAGCTC 1 cut(s) 85
SaqAI TTAA 3 cut(s) 143, 363, 546
SatI GCNGC 3 cut(s) 211, 324, 878
Sau3AI GATC 2 cut(s) 232, 704
Sau96I GGNCC 5 cut(s) 400, 427, 428, 497, 764
SchI GAGTC 2 cut(s) 111, 525
ScrFI CCNGG 4 cut(s) 229, 592, 958, 1047
SduI GDGCHC 2 cut(s) 85, 431
SfaNI GCATC 4 cut(s) 77, 84, 795, 921
SinI GGWCC 2 cut(s) 400, 764
SmiMI CAYNNNNRTG 2 cut(s) 452, 922
Sse9I AATT 3 cut(s) 817, 939, 1054
SseBI AGGCCT 2 cut(s) 25, 614
SspMI CTAG 2 cut(s) 78, 1017
SstI GAGCTC 1 cut(s) 85
StuI AGGCCT 2 cut(s) 25, 614
StyD4I CCNGG 4 cut(s) 227, 590, 956, 1045
TaaI ACNGT 8 cut(s) 109, 222, 266, 353, 468, 667, 869, 1038
TaqI TCGA 5 cut(s) 32, 47, 534, 584, 1021
TasI AATT 3 cut(s) 817, 939, 1054
TatI WGTACW 2 cut(s) 160, 787
TfiI GAWTC 3 cut(s) 581, 793, 970
Tru1I TTAA 3 cut(s) 143, 363, 546
Tru9I TTAA 3 cut(s) 143, 363, 546
TscAI CASTG 6 cut(s) 271, 277, 334, 358, 454, 471
TseFI GTSAC 2 cut(s) 667, 825
TseI GCWGC 3 cut(s) 210, 323, 877
Tsp45I GTSAC 2 cut(s) 667, 825
TspDTI ATGAA 2 cut(s) 68, 79
TspGWI ACGGA 1 cut(s) 75
TspRI CASTG 6 cut(s) 271, 277, 334, 358, 454, 471
Van91I CCANNNNNTGG 1 cut(s) 64
VpaK11BI GGWCC 2 cut(s) 400, 764
XceI RCATGY 1 cut(s) 457
XspI CTAG 2 cut(s) 78, 1017
Zsp2I ATGCAT 1 cut(s) 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.