FvH4_7g11080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011176
Physical Location & Seq
Forward (+)
10370054 .. 10372198
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11080.t1

Sequence Viewer

Length: 1050 bp
ATGAACCAGAGAATGGCATCTATAACTCAAGCCCTGTCCATGATGTCTACTAATGCTGTTCCCAGACTCCATTTCCGATCCCTGAACTTGTTAAAAAGCTCAAAGTCAGTACATTTACACGGTTGCCCTCACATTCAGATAAAAAGTCCCCTTGTTTGCTGCACAAAACTGTCTTCCTGGGATCCCTCATCTGAAACATACTCCCCCACGGACAGTGGCAGTGATAACTTTTTGACAAAAACTTCTAACATATTTGAAAACCTTTCCTCTGCTTGCACTGCTGAAGCACCAGGTACCAACACTGAAACCTCTGCTAGCACTGCTGAAGCACCAGGTACCAACACTGAAACGCTAAATGGCGCAAGTAATCTGACAGGAACAGAGCTTCAGGTCCTCAAATGGCCAATGTGGCTTCTGGGCCCTTCTCTTCTCCTCCTCACAGGCATGTTGCCAACACTGTGGCTACCGATATCTTCCGTATTTCTTGGCCCCAACATAGCAAGCCTGCTTTCTTTGGTCGGACTTGATTGCATTTTCAATCTTGGTGTAACCCTTTTTCTCCTCATGGCTGATTCAATTGCCCGGCCTAAACGTGCAGCACAAGCCTGTAGAAGCAAGCCTCCCTTAAGCTACAAGTTTTGGAATATAGTTGCAACTGTGACTGGATTTGTCATTCCCCTGATGATGGCTTGTGGATCGCAACAGGGTTTCCTCCAACCCCAGTTGCCTCCCATCTCATTTGCAGTTCTATTGGGTCCCTATCTTCTGCTTATCGCAGTACAGATTCTGACTGAGATGCTGACTTGGCATTGGCAGTCACCAGTTTGGCTGGTAACCCCTGTTGTTTATGAAGGTTACCGTTTGTTGCAGCTGATGAGAGGATTGAAGCTTGGAACTGAAATCATGGCACCAGCATGGATGATGCATACAATTAGAGGACTGGTATCTTGGTGGGTTCTGATTCTTGGTATGCAGTTGATGAGGGTTGCTTGGTTTGCAGGCTTCGCTAGTCGATATCGTCAGCAACCTCCCCCTCCTGGTGAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

350

Amino Acids

38.35

Weight (kDa)

9.01

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60590 AT3G60590 AT3G60590 AT3G60590
fragaria_vesca FvH4_7g11080 FvH4_7g11080
malus_domestica MD07G1115500.v1.1
prunus_persica Prupe.2G138000_v2.0.a1
pyrus_communis pycom07g10900
rosa_chinensis RchiOBHm_Chr1g0349101
rosa_laevigata RLG00000028606
rosa_multiflora Rmu_sc0008324.1_g000003 Rmu_sc0012100.1_g000004
rosa_roxburghii Rroxscaffold_4G00306120
rosa_rugosa Rorug01G0200100
rosa_samantha Rh1AG217800 Rh1BG183300 Rh1CG202200 Rh1DG213100
rosa_wichuraiana Rw1G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 293, 335
AccB1I GGYRCC 3 cut(s) 293, 335, 907
AccB7I CCANNNNNTGG 1 cut(s) 13
AccI GTMKAC 1 cut(s) 47
AclWI GGATC 4 cut(s) 72, 176, 189, 703
AcoI YGGCCR 1 cut(s) 401
AcuI CTGAAG 3 cut(s) 303, 345, 371
AfaI GTAC 4 cut(s) 111, 295, 337, 780
AfiI CCNNNNNNNGG 3 cut(s) 13, 685, 1037
AflII CTTAAG 1 cut(s) 625
AgsI TTSAA 4 cut(s) 257, 538, 576, 886
AjnI CCWGG 4 cut(s) 176, 289, 331, 1036
AluBI AGCT 5 cut(s) 99, 385, 630, 871, 889
AluI AGCT 5 cut(s) 99, 385, 630, 871, 889
AlwI GGATC 4 cut(s) 72, 176, 189, 703
AlwNI CAGNNNCTG 1 cut(s) 787
AoxI GGCC 4 cut(s) 401, 418, 487, 584
ApaI GGGCCC 1 cut(s) 422
ApeKI GCWGC 3 cut(s) 159, 596, 868
Asp718I GGTACC 2 cut(s) 293, 335
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 5 cut(s) 391, 418, 419, 488, 755
AsuC2I CCSGG 1 cut(s) 583
AsuHPI GGTGA 1 cut(s) 810
AsuNHI GCTAGC 1 cut(s) 314
AvaII GGWCC 2 cut(s) 391, 755
BaeGI GKGCMC 1 cut(s) 422
BalI TGGCCA 1 cut(s) 403
BamHI GGATCC 1 cut(s) 181
BanI GGYRCC 3 cut(s) 293, 335, 907
BanII GRGCYC 1 cut(s) 422
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 3 cut(s) 146, 608, 880
BccI CCATC 2 cut(s) 679, 740
BciT130I CCWGG 4 cut(s) 178, 291, 333, 1038
BcnI CCSGG 1 cut(s) 583
BfaI CTAG 2 cut(s) 315, 1008
BfmI CTRYAG 1 cut(s) 607
BfrI CTTAAG 1 cut(s) 625
BglI GCCNNNNNGGC 1 cut(s) 409
BisI GCNGC 3 cut(s) 160, 597, 869
BlsI GCNGC 3 cut(s) 161, 598, 870
Bme1390I CCNGG 5 cut(s) 178, 291, 333, 583, 1038
Bme18I GGWCC 2 cut(s) 391, 755
BmgT120I GGNCC 5 cut(s) 391, 418, 419, 488, 755
BmiI GGNNCC 8 cut(s) 183, 295, 337, 420, 490, 756, 757, 909
BmrFI CCNGG 5 cut(s) 178, 291, 333, 583, 1038
BmrI ACTGGG 1 cut(s) 715
BmsI GCATC 3 cut(s) 26, 786, 912
BmtI GCTAGC 1 cut(s) 318
BmuI ACTGGG 1 cut(s) 715
BpiI GAAGAC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 583
BsaJI CCNNGG 2 cut(s) 177, 207
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 685, 1037
Bse1I ACTGG 4 cut(s) 667, 721, 821, 945
BseBI CCWGG 4 cut(s) 178, 291, 333, 1038
BseDI CCNNGG 2 cut(s) 177, 207
BseGI GGATG 1 cut(s) 924
BseLI CCNNNNNNNGG 3 cut(s) 13, 685, 1037
BseMII CTCAG 1 cut(s) 783
BseNI ACTGG 4 cut(s) 667, 721, 821, 945
BseRI GAGGAG 3 cut(s) 422, 425, 551
BseSI GKGCMC 1 cut(s) 422
BseXI GCAGC 3 cut(s) 146, 608, 880
BsgI GTGCAG 2 cut(s) 145, 615
BshFI GGCC 4 cut(s) 403, 420, 489, 586
BshNI GGYRCC 3 cut(s) 293, 335, 907
BsiSI CCGG 1 cut(s) 583
BslFI GGGAC 2 cut(s) 132, 741
BslI CCNNNNNNNGG 3 cut(s) 13, 685, 1037
BsmFI GGGAC 2 cut(s) 132, 741
BsnI GGCC 4 cut(s) 403, 420, 489, 586
Bsp120I GGGCCC 1 cut(s) 418
Bsp1286I GDGCHC 1 cut(s) 422
Bsp143I GATC 3 cut(s) 77, 181, 695
BspANI GGCC 4 cut(s) 403, 420, 489, 586
BspCNI CTCAG 1 cut(s) 784
BspLI GGNNCC 8 cut(s) 183, 295, 337, 420, 490, 756, 757, 909
BspOI GCTAGC 1 cut(s) 318
BspPI GGATC 4 cut(s) 72, 176, 189, 703
BspT107I GGYRCC 3 cut(s) 293, 335, 907
BspTI CTTAAG 1 cut(s) 625
BsrI ACTGG 4 cut(s) 667, 721, 821, 945
BssECI CCNNGG 2 cut(s) 177, 207
BssMI GATC 3 cut(s) 77, 181, 695
Bst2UI CCWGG 4 cut(s) 178, 291, 333, 1038
Bst4CI ACNGT 6 cut(s) 122, 171, 215, 459, 658, 860
Bst6I CTCTTC 1 cut(s) 432
BstAFI CTTAAG 1 cut(s) 625
BstC8I GCNNGC 6 cut(s) 274, 316, 502, 506, 617, 1000
BstDEI CTNAG 1 cut(s) 792
BstDSI CCRYGG 1 cut(s) 207
BstEII GGTNACC 2 cut(s) 832, 854
BstF5I GGATG 1 cut(s) 924
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 3 cut(s) 80, 184, 698
BstMBI GATC 3 cut(s) 77, 181, 695
BstMWI GCNNNNNNNGC 7 cut(s) 278, 320, 409, 602, 805, 995, 1004
BstNI CCWGG 4 cut(s) 178, 291, 333, 1038
BstNSI RCATGY 1 cut(s) 448
BstPI GGTNACC 2 cut(s) 832, 854
BstSCI CCNGG 5 cut(s) 176, 289, 331, 581, 1036
BstSFI CTRYAG 1 cut(s) 607
BstSLI GKGCMC 1 cut(s) 422
BstV1I GCAGC 3 cut(s) 146, 608, 880
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 181
BstXI CCANNNNNNTGG 1 cut(s) 459
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 4 cut(s) 403, 420, 489, 586
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 924
BtsI GCAGTG 3 cut(s) 226, 276, 318
BtsIMutI CAGTG 7 cut(s) 220, 226, 276, 300, 318, 342, 455
Cac8I GCNNGC 6 cut(s) 274, 316, 502, 506, 617, 1000
CaiI CAGNNNCTG 1 cut(s) 787
CfoI GCGC 1 cut(s) 362
Cfr13I GGNCC 5 cut(s) 391, 418, 419, 488, 755
CsiI ACCWGGT 2 cut(s) 289, 331
Csp6I GTAC 4 cut(s) 110, 294, 336, 779
CviAII CATG 5 cut(s) 40, 445, 565, 904, 915
CviQI GTAC 4 cut(s) 110, 294, 336, 779
DdeI CTNAG 1 cut(s) 792
DpnI GATC 3 cut(s) 79, 183, 697
DpnII GATC 3 cut(s) 77, 181, 695
EaeI YGGCCR 1 cut(s) 401
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
Eco24I GRGCYC 1 cut(s) 422
Eco32I GATATC 2 cut(s) 471, 1016
Eco47I GGWCC 2 cut(s) 391, 755
Eco57I CTGAAG 3 cut(s) 303, 345, 371
Eco91I GGTNACC 2 cut(s) 832, 854
EcoO109I RGGNCCY 3 cut(s) 391, 419, 755
EcoO65I GGTNACC 2 cut(s) 832, 854
EcoRII CCWGG 4 cut(s) 176, 289, 331, 1036
EcoRV GATATC 2 cut(s) 471, 1016
EcoT22I ATGCAT 1 cut(s) 927
EcoT38I GRGCYC 1 cut(s) 422
FaeI CATG 5 cut(s) 43, 448, 568, 907, 918
FalI AAGNNNNNCTT 2 cut(s) 608, 640
FaqI GGGAC 2 cut(s) 132, 741
FatI CATG 5 cut(s) 39, 444, 564, 903, 914
FblI GTMKAC 1 cut(s) 47
Fnu4HI GCNGC 3 cut(s) 160, 597, 869
FokI GGATG 1 cut(s) 931
FriOI GRGCYC 1 cut(s) 422
Fsp4HI GCNGC 3 cut(s) 160, 597, 869
FspBI CTAG 2 cut(s) 315, 1008
GlaI GCGC 1 cut(s) 361
GluI GCNGC 3 cut(s) 160, 597, 869
HaeIII GGCC 4 cut(s) 403, 420, 489, 586
HapII CCGG 1 cut(s) 583
HhaI GCGC 1 cut(s) 362
Hin1II CATG 5 cut(s) 43, 448, 568, 907, 918
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HindIII AAGCTT 1 cut(s) 887
HinfI GANTC 4 cut(s) 66, 572, 784, 961
HpaII CCGG 1 cut(s) 583
HphI GGTGA 1 cut(s) 810
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 7 cut(s) 77, 138, 193, 372, 521, 789, 960
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 2 cut(s) 432, 845
HpyCH4III ACNGT 6 cut(s) 122, 171, 215, 459, 658, 860
HpyCH4IV ACGT 1 cut(s) 592
HpyF10VI GCNNNNNNNGC 7 cut(s) 278, 320, 409, 602, 805, 995, 1004
HpyF3I CTNAG 1 cut(s) 792
HpySE526I ACGT 1 cut(s) 592
Hsp92II CATG 5 cut(s) 43, 448, 568, 907, 918
HspAI GCGC 1 cut(s) 360
KflI GGGWCCC 1 cut(s) 755
KpnI GGTACC 2 cut(s) 297, 339
Kzo9I GATC 3 cut(s) 77, 181, 695
Lsp1109I GCAGC 3 cut(s) 146, 608, 880
LweI GCATC 3 cut(s) 26, 786, 912
MabI ACCWGGT 2 cut(s) 289, 331
MaeI CTAG 2 cut(s) 315, 1008
MaeII ACGT 1 cut(s) 592
MaeIII GTNAC 5 cut(s) 547, 658, 816, 832, 854
MalI GATC 3 cut(s) 79, 183, 697
MboI GATC 3 cut(s) 77, 181, 695
MboII GAAGA 4 cut(s) 165, 419, 465, 755
MfeI CAATTG 1 cut(s) 576
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 422
MlsI TGGCCA 1 cut(s) 403
MluCI AATT 3 cut(s) 576, 930, 1045
MluNI TGGCCA 1 cut(s) 403
MlyI GAGTC 1 cut(s) 60
MmeI TCCRAC 2 cut(s) 499, 739
Mox20I TGGCCA 1 cut(s) 403
Mph1103I ATGCAT 1 cut(s) 927
MscI TGGCCA 1 cut(s) 403
MseI TTAA 2 cut(s) 92, 626
MslI CAYNNNNRTG 2 cut(s) 443, 913
Msp20I TGGCCA 1 cut(s) 403
MspA1I CMGCKG 1 cut(s) 871
MspCI CTTAAG 1 cut(s) 625
MspI CCGG 1 cut(s) 583
MspR9I CCNGG 5 cut(s) 178, 291, 333, 583, 1038
MunI CAATTG 1 cut(s) 576
MvaI CCWGG 4 cut(s) 178, 291, 333, 1038
MwoI GCNNNNNNNGC 7 cut(s) 278, 320, 409, 602, 805, 995, 1004
NciI CCSGG 1 cut(s) 583
NdeII GATC 3 cut(s) 77, 181, 695
NheI GCTAGC 1 cut(s) 314
NlaIII CATG 5 cut(s) 43, 448, 568, 907, 918
NlaIV GGNNCC 8 cut(s) 183, 295, 337, 420, 490, 756, 757, 909
NmuCI GTSAC 2 cut(s) 658, 816
NsiI ATGCAT 1 cut(s) 927
NspI RCATGY 1 cut(s) 448
PfeI GAWTC 3 cut(s) 572, 784, 961
PflMI CCANNNNNTGG 1 cut(s) 13
PkrI GCNGC 3 cut(s) 161, 598, 870
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PpuMI RGGWCCY 2 cut(s) 391, 755
Psp5II RGGWCCY 2 cut(s) 391, 755
Psp6I CCWGG 4 cut(s) 176, 289, 331, 1036
PspEI GGTNACC 2 cut(s) 832, 854
PspGI CCWGG 4 cut(s) 176, 289, 331, 1036
PspN4I GGNNCC 8 cut(s) 183, 295, 337, 420, 490, 756, 757, 909
PspOMI GGGCCC 1 cut(s) 418
PspPI GGNCC 5 cut(s) 391, 418, 419, 488, 755
PspPPI RGGWCCY 2 cut(s) 391, 755
PstNI CAGNNNCTG 1 cut(s) 787
PsuI RGATCY 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 871
RsaI GTAC 4 cut(s) 111, 295, 337, 780
RsaNI GTAC 4 cut(s) 110, 294, 336, 779
RseI CAYNNNNRTG 2 cut(s) 443, 913
SaqAI TTAA 2 cut(s) 92, 626
SatI GCNGC 3 cut(s) 160, 597, 869
Sau3AI GATC 3 cut(s) 77, 181, 695
Sau96I GGNCC 5 cut(s) 391, 418, 419, 488, 755
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 5 cut(s) 178, 291, 333, 583, 1038
SduI GDGCHC 1 cut(s) 422
SexAI ACCWGGT 2 cut(s) 289, 331
SfaNI GCATC 3 cut(s) 26, 786, 912
SfcI CTRYAG 1 cut(s) 607
SinI GGWCC 2 cut(s) 391, 755
SmiMI CAYNNNNRTG 2 cut(s) 443, 913
SmlI CTYRAG 2 cut(s) 27, 625
SmoI CTYRAG 2 cut(s) 27, 625
Sse9I AATT 3 cut(s) 576, 930, 1045
SspMI CTAG 2 cut(s) 315, 1008
StyD4I CCNGG 5 cut(s) 176, 289, 331, 581, 1036
TaaI ACNGT 6 cut(s) 122, 171, 215, 459, 658, 860
TaiI ACGT 1 cut(s) 595
TaqI TCGA 1 cut(s) 1012
TasI AATT 3 cut(s) 576, 930, 1045
TatI WGTACW 2 cut(s) 109, 778
TfiI GAWTC 3 cut(s) 572, 784, 961
Tru1I TTAA 2 cut(s) 92, 626
Tru9I TTAA 2 cut(s) 92, 626
TscAI CASTG 7 cut(s) 220, 226, 283, 307, 325, 349, 462
TseFI GTSAC 2 cut(s) 658, 816
TseI GCWGC 3 cut(s) 159, 596, 868
Tsp45I GTSAC 2 cut(s) 658, 816
TspDTI ATGAA 2 cut(s) 17, 864
TspGWI ACGGA 2 cut(s) 224, 466
TspRI CASTG 7 cut(s) 220, 226, 283, 307, 325, 349, 462
Van91I CCANNNNNTGG 1 cut(s) 13
Vha464I CTTAAG 1 cut(s) 625
VpaK11BI GGWCC 2 cut(s) 391, 755
XceI RCATGY 1 cut(s) 448
XmiI GTMKAC 1 cut(s) 47
XspI CTAG 2 cut(s) 315, 1008
Zsp2I ATGCAT 1 cut(s) 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.