pycom07g10900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0011176
Physical Location & Seq
Reverse (-)
11286978 .. 11287952
975 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g10900.1

Sequence Viewer

Length: 975 bp
ATGGCATCATTAGCTCAAACTCCATTCATGATGTCTGCCAATAATGTTTGCAGAGTCCACCCTGCAATGCAGAAATCAGTGAACACATCAAACACAATACATATACCCACCTTTTCTCACATTCGGATAAAACTTTCCCCTGTTTGCTGCACAAAACTGACTCGCTGGGAGCCCTCAGCTGCCTCATACGCCCCCACGGAGAGTGCTGGTGACAACTTCTTGAATAAAACCTCCAACATATTTGAAACCCTTTCTTCTATTAGCAATGATGAAGCACCAGAAACCAACAGTGAAACGCTTACTGATGCAAGTAATCAGACAAAAACGGAGTTTCAGGTCCTCAAATGGCCAATGTGGCTCTTGGGCCCTTCTCTTCTCCTCATCACCGGCATGGTGCCAACTTTGTGGCTACCAATATCTTCCATATTCCTTGGCCCCAACATAGCCAGCCTGCTTTCCTTGGTCGGACTTGATTGTATATTTAATCTTGGCGCAACCCTTTTTCTACTCATGGCCGATTCTTGTGCTCGGCCTAAACAGCCAGAACAAGCCTGTAAAAGCAAGCCCCCGTTTAGCTACCAGTTTTGGAATATGGTTGCAACCGTGTCTGGATTTATCGTTCCCCTAATAATGGCTTTTGGATCCCAAAAGGGTTTCCTCCAACCCCAGCTGCCTTTCATCTCATTTGCAGTTCTATTGGGTCCCTACCTTCTGCTTATTTCAGTACAAATTCTGACAGAGATGCTGACTTGGCATTGGCAGTCACCCGTTTGGCTGGTGACCCCTGTAGTGTACGAGTCTTACCGGCTGTTGCAGCTGATGAGGGGACTGAAGCTTGGAACTGAGCTCAGTGCACCAGCATGGGTGATGCATACGATCAGAGGACTAGTGTCGTGGTGGGTACTGATTCTTGGCATGCAGCTGATGAGAGTTGCTTGGTTTGCGGGTTTCAGTGCTCGAGCTCGTAAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

36.12

Weight (kDa)

9.07

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60590 AT3G60590 AT3G60590 AT3G60590
fragaria_vesca FvH4_7g11080 FvH4_7g11080
malus_domestica MD07G1115500.v1.1
prunus_persica Prupe.2G138000_v2.0.a1
pyrus_communis pycom07g10900
rosa_chinensis RchiOBHm_Chr1g0349101
rosa_laevigata RLG00000028606
rosa_multiflora Rmu_sc0008324.1_g000003 Rmu_sc0012100.1_g000004
rosa_roxburghii Rroxscaffold_4G00306120
rosa_rugosa Rorug01G0200100
rosa_samantha Rh1AG217800 Rh1BG183300 Rh1CG202200 Rh1DG213100
rosa_wichuraiana Rw1G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 394
AciI CCGC 1 cut(s) 944
AclWI GGATC 2 cut(s) 636, 649
AcoI YGGCCR 2 cut(s) 347, 513
AcsI RAATTY 1 cut(s) 729
AcuI CTGAAG 1 cut(s) 851
AfaI GTAC 3 cut(s) 726, 794, 903
AfiI CCNNNNNNNGG 1 cut(s) 631
AgsI TTSAA 2 cut(s) 223, 245
AhlI ACTAGT 1 cut(s) 886
AloI GAACNNNNNNTCC 2 cut(s) 603, 635
AluBI AGCT 9 cut(s) 14, 179, 576, 670, 817, 835, 847, 922, 962
AluI AGCT 9 cut(s) 14, 179, 576, 670, 817, 835, 847, 922, 962
Alw21I GWGCWC 5 cut(s) 529, 849, 856, 958, 964
Alw44I GTGCAC 1 cut(s) 852
AlwI GGATC 2 cut(s) 636, 649
Ama87I CYCGRG 1 cut(s) 957
AoxI GGCC 5 cut(s) 347, 364, 433, 513, 530
ApaI GGGCCC 1 cut(s) 368
ApaLI GTGCAC 1 cut(s) 852
ApeKI GCWGC 5 cut(s) 147, 179, 670, 814, 919
ApoI RAATTY 1 cut(s) 729
AspLEI GCGC 1 cut(s) 494
AspS9I GGNCC 5 cut(s) 337, 364, 365, 434, 701
AsuHPI GGTGA 5 cut(s) 221, 376, 756, 790, 877
AvaI CYCGRG 1 cut(s) 957
AvaII GGWCC 2 cut(s) 337, 701
BaeGI GKGCMC 2 cut(s) 368, 856
BalI TGGCCA 1 cut(s) 349
BamHI GGATCC 1 cut(s) 641
BanI GGYRCC 1 cut(s) 394
BanII GRGCYC 4 cut(s) 174, 368, 849, 964
Bbv12I GWGCWC 5 cut(s) 529, 849, 856, 958, 964
BbvCI CCTCAGC 1 cut(s) 175
BbvI GCAGC 5 cut(s) 134, 166, 657, 826, 931
BcgI CGANNNNNNTGC 2 cut(s) 506, 540
BcuI ACTAGT 1 cut(s) 886
BfaI CTAG 1 cut(s) 887
BfmI CTRYAG 1 cut(s) 786
BglI GCCNNNNNGGC 1 cut(s) 355
BisI GCNGC 5 cut(s) 148, 180, 671, 815, 920
BlsI GCNGC 5 cut(s) 149, 181, 672, 816, 921
Bme18I GGWCC 2 cut(s) 337, 701
BmeT110I CYCGRG 1 cut(s) 957
BmgT120I GGNCC 5 cut(s) 337, 364, 365, 434, 701
BmiI GGNNCC 7 cut(s) 171, 366, 396, 436, 643, 702, 703
BmsI GCATC 4 cut(s) 14, 295, 732, 858
BoxI GACNNNNGTC 1 cut(s) 889
Bpu10I CCTNAGC 1 cut(s) 175
BsaJI CCNNGG 3 cut(s) 195, 430, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 631
Bse118I RCCGGY 2 cut(s) 386, 804
Bse1I ACTGG 1 cut(s) 580
Bse3DI GCAATG 2 cut(s) 72, 271
BseDI CCNNGG 3 cut(s) 195, 430, 459
BseLI CCNNNNNNNGG 1 cut(s) 631
BseMI GCAATG 2 cut(s) 72, 271
BseMII CTCAG 3 cut(s) 189, 834, 862
BseNI ACTGG 1 cut(s) 580
BseRI GAGGAG 1 cut(s) 368
BseSI GKGCMC 2 cut(s) 368, 856
BseXI GCAGC 5 cut(s) 134, 166, 657, 826, 931
BseYI CCCAGC 2 cut(s) 165, 666
BsgI GTGCAG 1 cut(s) 133
BshFI GGCC 5 cut(s) 349, 366, 435, 515, 532
BshNI GGYRCC 1 cut(s) 394
BsiHKAI GWGCWC 5 cut(s) 529, 849, 856, 958, 964
BsiHKCI CYCGRG 1 cut(s) 957
BsiSI CCGG 2 cut(s) 387, 805
BslFI GGGAC 2 cut(s) 687, 840
BslI CCNNNNNNNGG 1 cut(s) 631
BsmFI GGGAC 2 cut(s) 687, 840
BsnI GGCC 5 cut(s) 349, 366, 435, 515, 532
BsoBI CYCGRG 1 cut(s) 957
Bsp120I GGGCCC 1 cut(s) 364
Bsp1286I GDGCHC 7 cut(s) 174, 368, 529, 849, 856, 958, 964
Bsp143I GATC 2 cut(s) 641, 876
BspACI CCGC 1 cut(s) 944
BspANI GGCC 5 cut(s) 349, 366, 435, 515, 532
BspCNI CTCAG 3 cut(s) 188, 835, 861
BspHI TCATGA 1 cut(s) 27
BspLI GGNNCC 7 cut(s) 171, 366, 396, 436, 643, 702, 703
BspPI GGATC 2 cut(s) 636, 649
BspT107I GGYRCC 1 cut(s) 394
BsrDI GCAATG 2 cut(s) 72, 271
BsrFI RCCGGY 2 cut(s) 386, 804
BsrI ACTGG 1 cut(s) 580
BssAI RCCGGY 2 cut(s) 386, 804
BssECI CCNNGG 3 cut(s) 195, 430, 459
BssMI GATC 2 cut(s) 641, 876
BssT1I CCWWGG 2 cut(s) 430, 459
Bst4CI ACNGT 2 cut(s) 290, 604
Bst6I CTCTTC 1 cut(s) 378
BstC8I GCNNGC 4 cut(s) 448, 452, 563, 917
BstDEI CTNAG 3 cut(s) 175, 843, 848
BstDSI CCRYGG 1 cut(s) 195
BstEII GGTNACC 1 cut(s) 778
BstHHI GCGC 1 cut(s) 494
BstKTI GATC 2 cut(s) 644, 879
BstMBI GATC 2 cut(s) 641, 876
BstMWI GCNNNNNNNGC 7 cut(s) 11, 188, 355, 538, 751, 814, 941
BstNSI RCATGY 1 cut(s) 919
BstPAI GACNNNNGTC 1 cut(s) 889
BstPI GGTNACC 1 cut(s) 778
BstSFI CTRYAG 1 cut(s) 786
BstSLI GKGCMC 2 cut(s) 368, 856
BstV1I GCAGC 5 cut(s) 134, 166, 657, 826, 931
BstX2I RGATCY 1 cut(s) 641
BstXI CCANNNNNNTGG 1 cut(s) 405
BstYI RGATCY 1 cut(s) 641
BsuRI GGCC 5 cut(s) 349, 366, 435, 515, 532
BtgI CCRYGG 1 cut(s) 195
BtsIMutI CAGTG 4 cut(s) 84, 295, 856, 958
Cac8I GCNNGC 4 cut(s) 448, 452, 563, 917
CciI TCATGA 1 cut(s) 27
CfoI GCGC 1 cut(s) 494
Cfr10I RCCGGY 2 cut(s) 386, 804
Cfr13I GGNCC 5 cut(s) 337, 364, 365, 434, 701
Csp6I GTAC 3 cut(s) 725, 793, 902
CviAII CATG 5 cut(s) 28, 391, 511, 861, 916
CviQI GTAC 3 cut(s) 725, 793, 902
DdeI CTNAG 3 cut(s) 175, 843, 848
DpnI GATC 2 cut(s) 643, 878
DpnII GATC 2 cut(s) 641, 876
EaeI YGGCCR 2 cut(s) 347, 513
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Ecl136II GAGCTC 2 cut(s) 847, 962
Eco130I CCWWGG 2 cut(s) 430, 459
Eco24I GRGCYC 4 cut(s) 174, 368, 849, 964
Eco47I GGWCC 2 cut(s) 337, 701
Eco53kI GAGCTC 2 cut(s) 847, 962
Eco57I CTGAAG 1 cut(s) 851
Eco88I CYCGRG 1 cut(s) 957
Eco91I GGTNACC 1 cut(s) 778
EcoICRI GAGCTC 2 cut(s) 847, 962
EcoO109I RGGNCCY 3 cut(s) 337, 365, 701
EcoO65I GGTNACC 1 cut(s) 778
EcoT14I CCWWGG 2 cut(s) 430, 459
EcoT22I ATGCAT 1 cut(s) 873
EcoT38I GRGCYC 4 cut(s) 174, 368, 849, 964
ErhI CCWWGG 2 cut(s) 430, 459
FaeI CATG 5 cut(s) 31, 394, 514, 864, 919
FaqI GGGAC 2 cut(s) 687, 840
FatI CATG 5 cut(s) 27, 390, 510, 860, 915
FauI CCCGC 1 cut(s) 937
Fnu4HI GCNGC 5 cut(s) 148, 180, 671, 815, 920
FriOI GRGCYC 4 cut(s) 174, 368, 849, 964
Fsp4HI GCNGC 5 cut(s) 148, 180, 671, 815, 920
FspBI CTAG 1 cut(s) 887
GlaI GCGC 1 cut(s) 493
GluI GCNGC 5 cut(s) 148, 180, 671, 815, 920
GsaI CCCAGC 2 cut(s) 169, 670
HaeIII GGCC 5 cut(s) 349, 366, 435, 515, 532
HapII CCGG 2 cut(s) 387, 805
HhaI GCGC 1 cut(s) 494
Hin1II CATG 5 cut(s) 31, 394, 514, 864, 919
Hin6I GCGC 1 cut(s) 492
HinP1I GCGC 1 cut(s) 492
HindIII AAGCTT 1 cut(s) 833
HinfI GANTC 5 cut(s) 54, 160, 518, 797, 907
HpaII CCGG 2 cut(s) 387, 805
HphI GGTGA 5 cut(s) 221, 376, 756, 790, 877
Hpy166II GTNNAC 4 cut(s) 58, 82, 793, 854
Hpy188I TCNGA 5 cut(s) 126, 318, 467, 735, 881
Hpy188III TCNNGA 3 cut(s) 28, 220, 609
Hpy8I GTNNAC 4 cut(s) 58, 82, 793, 854
HpyAV CCTTC 2 cut(s) 378, 719
HpyCH4III ACNGT 2 cut(s) 290, 604
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 188, 355, 538, 751, 814, 941
HpyF3I CTNAG 3 cut(s) 175, 843, 848
Hsp92II CATG 5 cut(s) 31, 394, 514, 864, 919
HspAI GCGC 1 cut(s) 492
KflI GGGWCCC 1 cut(s) 701
Kzo9I GATC 2 cut(s) 641, 876
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 5 cut(s) 134, 166, 657, 826, 931
LweI GCATC 4 cut(s) 14, 295, 732, 858
MaeI CTAG 1 cut(s) 887
MaeIII GTNAC 3 cut(s) 209, 762, 778
MalI GATC 2 cut(s) 643, 878
MboI GATC 2 cut(s) 641, 876
MboII GAAGA 3 cut(s) 246, 365, 411
MflI RGATCY 1 cut(s) 641
MhlI GDGCHC 7 cut(s) 174, 368, 529, 849, 856, 958, 964
MlsI TGGCCA 1 cut(s) 349
MluCI AATT 1 cut(s) 729
MluNI TGGCCA 1 cut(s) 349
MlyI GAGTC 3 cut(s) 63, 154, 806
MmeI TCCRAC 3 cut(s) 258, 445, 685
MnlI CCTC 8 cut(s) 184, 193, 241, 350, 389, 668, 816, 875
Mox20I TGGCCA 1 cut(s) 349
Mph1103I ATGCAT 1 cut(s) 873
MscI TGGCCA 1 cut(s) 349
MseI TTAA 1 cut(s) 483
MslI CAYNNNNRTG 2 cut(s) 389, 859
Msp20I TGGCCA 1 cut(s) 349
MspA1I CMGCKG 4 cut(s) 179, 670, 817, 922
MspI CCGG 2 cut(s) 387, 805
MwoI GCNNNNNNNGC 7 cut(s) 11, 188, 355, 538, 751, 814, 941
NdeII GATC 2 cut(s) 641, 876
NlaIII CATG 5 cut(s) 31, 394, 514, 864, 919
NlaIV GGNNCC 7 cut(s) 171, 366, 396, 436, 643, 702, 703
NmeAIII GCCGAG 1 cut(s) 508
NmuCI GTSAC 3 cut(s) 209, 762, 778
NsiI ATGCAT 1 cut(s) 873
NspI RCATGY 1 cut(s) 919
PaeI GCATGC 1 cut(s) 919
PaeR7I CTCGAG 1 cut(s) 957
PagI TCATGA 1 cut(s) 27
PfeI GAWTC 2 cut(s) 518, 907
PkrI GCNGC 5 cut(s) 149, 181, 672, 816, 921
PleI GAGTC 3 cut(s) 62, 154, 805
PpsI GAGTC 3 cut(s) 62, 154, 805
PpuMI RGGWCCY 2 cut(s) 337, 701
PshAI GACNNNNGTC 1 cut(s) 889
Psp124BI GAGCTC 2 cut(s) 849, 964
Psp5II RGGWCCY 2 cut(s) 337, 701
PspEI GGTNACC 1 cut(s) 778
PspFI CCCAGC 2 cut(s) 165, 666
PspN4I GGNNCC 7 cut(s) 171, 366, 396, 436, 643, 702, 703
PspOMI GGGCCC 1 cut(s) 364
PspPI GGNCC 5 cut(s) 337, 364, 365, 434, 701
PspPPI RGGWCCY 2 cut(s) 337, 701
PspXI VCTCGAGB 1 cut(s) 957
PsuI RGATCY 1 cut(s) 641
PvuII CAGCTG 4 cut(s) 179, 670, 817, 922
RsaI GTAC 3 cut(s) 726, 794, 903
RsaNI GTAC 3 cut(s) 725, 793, 902
RseI CAYNNNNRTG 2 cut(s) 389, 859
SacI GAGCTC 2 cut(s) 849, 964
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 5 cut(s) 148, 180, 671, 815, 920
Sau3AI GATC 2 cut(s) 641, 876
Sau96I GGNCC 5 cut(s) 337, 364, 365, 434, 701
SchI GAGTC 3 cut(s) 63, 154, 806
SduI GDGCHC 7 cut(s) 174, 368, 529, 849, 856, 958, 964
SfaNI GCATC 4 cut(s) 14, 295, 732, 858
SfcI CTRYAG 1 cut(s) 786
Sfr274I CTCGAG 1 cut(s) 957
SinI GGWCC 2 cut(s) 337, 701
SlaI CTCGAG 1 cut(s) 957
SmiMI CAYNNNNRTG 2 cut(s) 389, 859
SmlI CTYRAG 1 cut(s) 957
SmoI CTYRAG 1 cut(s) 957
SpeI ACTAGT 1 cut(s) 886
SphI GCATGC 1 cut(s) 919
Sse9I AATT 1 cut(s) 729
SsiI CCGC 1 cut(s) 944
SspMI CTAG 1 cut(s) 887
SstI GAGCTC 2 cut(s) 849, 964
StyI CCWWGG 2 cut(s) 430, 459
TaaI ACNGT 2 cut(s) 290, 604
TaqI TCGA 1 cut(s) 958
TasI AATT 1 cut(s) 729
TatI WGTACW 1 cut(s) 724
TfiI GAWTC 2 cut(s) 518, 907
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 4 cut(s) 84, 295, 856, 958
TseFI GTSAC 3 cut(s) 209, 762, 778
TseI GCWGC 5 cut(s) 147, 179, 670, 814, 919
Tsp45I GTSAC 3 cut(s) 209, 762, 778
TspDTI ATGAA 3 cut(s) 16, 285, 667
TspGWI ACGGA 2 cut(s) 212, 341
TspRI CASTG 4 cut(s) 84, 295, 856, 958
VneI GTGCAC 1 cut(s) 852
VpaK11BI GGWCC 2 cut(s) 337, 701
XapI RAATTY 1 cut(s) 729
XceI RCATGY 1 cut(s) 919
XhoI CTCGAG 1 cut(s) 957
XspI CTAG 1 cut(s) 887
Zsp2I ATGCAT 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.