Prupe.2G138000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0011176
Physical Location & Seq
Forward (+)
19517922 .. 19520495
2574 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G138000.1

Sequence Viewer

Length: 999 bp
ATGGCATGTTTAGCTCAACCTCCATTCATGATGTCTACCAATTCAGTTCCCAGAGTCCGCTCCCCAATGCAGAAAGTATTGAAAACCTCACATGCAGTACATTTACATACTCTGTCTCACATTCGGATGAAACATTCCCCTGTTTGCTGCACAAAACTGACTCGCTGGGAGCCCTCATCTGCCACATACACCCCCACCGAGAGTGCTGATGACAGCTTCTTAAATAAAACCACCAACATATTTGAAACCCTTTCTTCTGTTAGCACTGATGAAGCACAAGAAACCAACAGTGAAAAGCGTATTGATGCAAGTAATCAGACAAGACCAGAGGTTCAGTTCCTCAAATGGCCAATGTGGCTCTTGGGCCCTTCTCTTCTCCTCATCACTGGCATGGTGCCAACTTTGTGGCTACCGCTATCGTCCATATTCCTTGGCCCCAACATAGCCAGCCTGCTTTCCTTGGTCGGACTTGATTGCATATTTAATCTTGGTGCAACCCTTTTTCTCCTCATGGCTGATTCTTGTGCTCGCCCCAAACTCCCAGCACAAGCCTGCAAAAGCAAGCCTCCCTTTAGCTACCAGTTTTGGAATATGGTTGCAACTGTGACTGGATTTATCATTCCCCTGATGATGGCTTTTGGATCCCAAAAGGGTTTCCTCCAACCCCAGTTGCCTTTGATCTCATTTTCAGTTCTAATGGGTCCCTACCTTCTGCTTATTTCAGTACAGATACTGACTGAGATGCTGACTTGGCATTGGCAGTCACCAGTTTGGCTGGTGACCCCTGTAGTGTACGAGGCTTACCGGCTGTTGCAGCTGATGAGGGGATTGAAGCTTGGAACTGAGCTCAGTGCACCAGCATGGATGATGCATACAATTAGGGGACTGGTGTCCTGGTGGGTGCTAATTCTTAGCATGCAGCTGATGAGAGTTGCTTGGTATGCTGGCTTTACTTCTCGAACTCGTCATCAGCAACAGCGGCCTTCTGATGATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

333

Amino Acids

37.49

Weight (kDa)

9.18

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60590 AT3G60590 AT3G60590 AT3G60590
fragaria_vesca FvH4_7g11080 FvH4_7g11080
malus_domestica MD07G1115500.v1.1
prunus_persica Prupe.2G138000_v2.0.a1
pyrus_communis pycom07g10900
rosa_chinensis RchiOBHm_Chr1g0349101
rosa_laevigata RLG00000028606
rosa_multiflora Rmu_sc0008324.1_g000003 Rmu_sc0012100.1_g000004
rosa_roxburghii Rroxscaffold_4G00306120
rosa_rugosa Rorug01G0200100
rosa_samantha Rh1AG217800 Rh1BG183300 Rh1CG202200 Rh1DG213100
rosa_wichuraiana Rw1G018510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 394
AccBSI CCGCTC 1 cut(s) 60
AccI GTMKAC 1 cut(s) 35
AciI CCGC 3 cut(s) 58, 413, 979
AclWI GGATC 2 cut(s) 636, 649
AcoI YGGCCR 1 cut(s) 347
AfaI GTAC 3 cut(s) 99, 726, 794
AfiI CCNNNNNNNGG 1 cut(s) 631
AgsI TTSAA 3 cut(s) 82, 245, 832
AjnI CCWGG 1 cut(s) 893
AluBI AGCT 7 cut(s) 14, 216, 576, 817, 835, 847, 922
AluI AGCT 7 cut(s) 14, 216, 576, 817, 835, 847, 922
Alw21I GWGCWC 3 cut(s) 529, 849, 856
Alw26I GTCTC 1 cut(s) 120
Alw44I GTGCAC 1 cut(s) 852
AlwI GGATC 2 cut(s) 636, 649
AlwNI CAGNNNCTG 1 cut(s) 733
AoxI GGCC 4 cut(s) 347, 364, 433, 980
ApaI GGGCCC 1 cut(s) 368
ApaLI GTGCAC 1 cut(s) 852
ApeKI GCWGC 3 cut(s) 147, 814, 919
AspS9I GGNCC 4 cut(s) 364, 365, 434, 701
AsuHPI GGTGA 2 cut(s) 756, 790
AvaII GGWCC 1 cut(s) 701
BaeGI GKGCMC 2 cut(s) 368, 856
BalI TGGCCA 1 cut(s) 349
BamHI GGATCC 1 cut(s) 641
BanI GGYRCC 1 cut(s) 394
BanII GRGCYC 3 cut(s) 174, 368, 849
Bbv12I GWGCWC 3 cut(s) 529, 849, 856
BbvI GCAGC 3 cut(s) 134, 826, 931
BccI CCATC 1 cut(s) 625
BciT130I CCWGG 1 cut(s) 895
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 1 cut(s) 997
BfmI CTRYAG 1 cut(s) 786
BglI GCCNNNNNGGC 1 cut(s) 355
BisI GCNGC 4 cut(s) 148, 815, 920, 980
BlsI GCNGC 4 cut(s) 149, 816, 921, 981
Bme1390I CCNGG 1 cut(s) 895
Bme18I GGWCC 1 cut(s) 701
BmgT120I GGNCC 4 cut(s) 364, 365, 434, 701
BmiI GGNNCC 7 cut(s) 171, 366, 396, 436, 643, 702, 703
BmrFI CCNGG 1 cut(s) 895
BmrI ACTGGG 1 cut(s) 661
BmsI GCATC 3 cut(s) 295, 732, 858
BmuI ACTGGG 1 cut(s) 661
BoxI GACNNNNGTC 1 cut(s) 889
BsaJI CCNNGG 2 cut(s) 430, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 631
Bse118I RCCGGY 1 cut(s) 804
Bse1I ACTGG 6 cut(s) 391, 580, 613, 667, 767, 891
BseBI CCWGG 1 cut(s) 895
BseDI CCNNGG 2 cut(s) 430, 459
BseGI GGATG 2 cut(s) 132, 870
BseLI CCNNNNNNNGG 1 cut(s) 631
BseMII CTCAG 3 cut(s) 729, 834, 862
BseNI ACTGG 6 cut(s) 391, 580, 613, 667, 767, 891
BseRI GAGGAG 2 cut(s) 368, 497
BseSI GKGCMC 2 cut(s) 368, 856
BseXI GCAGC 3 cut(s) 134, 826, 931
BseYI CCCAGC 2 cut(s) 165, 541
BsgI GTGCAG 1 cut(s) 133
BshFI GGCC 4 cut(s) 349, 366, 435, 982
BshNI GGYRCC 1 cut(s) 394
BsiHKAI GWGCWC 3 cut(s) 529, 849, 856
BsiSI CCGG 1 cut(s) 805
BslFI GGGAC 2 cut(s) 687, 897
BslI CCNNNNNNNGG 1 cut(s) 631
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 2 cut(s) 687, 897
BsnI GGCC 4 cut(s) 349, 366, 435, 982
Bsp120I GGGCCC 1 cut(s) 364
Bsp1286I GDGCHC 5 cut(s) 174, 368, 529, 849, 856
Bsp143I GATC 2 cut(s) 641, 678
BspACI CCGC 3 cut(s) 58, 413, 979
BspANI GGCC 4 cut(s) 349, 366, 435, 982
BspCNI CTCAG 3 cut(s) 730, 835, 861
BspHI TCATGA 1 cut(s) 27
BspLI GGNNCC 7 cut(s) 171, 366, 396, 436, 643, 702, 703
BspPI GGATC 2 cut(s) 636, 649
BspT107I GGYRCC 1 cut(s) 394
BsrBI CCGCTC 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 804
BsrI ACTGG 6 cut(s) 391, 580, 613, 667, 767, 891
BssAI RCCGGY 1 cut(s) 804
BssECI CCNNGG 2 cut(s) 430, 459
BssMI GATC 2 cut(s) 641, 678
BssT1I CCWWGG 2 cut(s) 430, 459
Bst2UI CCWGG 1 cut(s) 895
Bst4CI ACNGT 2 cut(s) 290, 604
Bst6I CTCTTC 1 cut(s) 378
BstC8I GCNNGC 7 cut(s) 448, 452, 529, 553, 563, 917, 946
BstDEI CTNAG 4 cut(s) 738, 843, 848, 911
BstEII GGTNACC 1 cut(s) 778
BstF5I GGATG 2 cut(s) 132, 870
BstKTI GATC 2 cut(s) 644, 681
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 2 cut(s) 641, 678
BstMWI GCNNNNNNNGC 6 cut(s) 11, 355, 751, 814, 941, 979
BstNI CCWGG 1 cut(s) 895
BstNSI RCATGY 3 cut(s) 9, 95, 919
BstPAI GACNNNNGTC 1 cut(s) 889
BstPI GGTNACC 1 cut(s) 778
BstSCI CCNGG 1 cut(s) 893
BstSFI CTRYAG 1 cut(s) 786
BstSLI GKGCMC 2 cut(s) 368, 856
BstV1I GCAGC 3 cut(s) 134, 826, 931
BstX2I RGATCY 1 cut(s) 641
BstXI CCANNNNNNTGG 1 cut(s) 405
BstYI RGATCY 1 cut(s) 641
BsuRI GGCC 4 cut(s) 349, 366, 435, 982
BtsCI GGATG 2 cut(s) 132, 870
BtsIMutI CAGTG 4 cut(s) 264, 295, 384, 856
Cac8I GCNNGC 7 cut(s) 448, 452, 529, 553, 563, 917, 946
CaiI CAGNNNCTG 1 cut(s) 733
CciI TCATGA 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 804
Cfr13I GGNCC 4 cut(s) 364, 365, 434, 701
Csp6I GTAC 3 cut(s) 98, 725, 793
CviAII CATG 7 cut(s) 6, 28, 92, 391, 511, 861, 916
CviQI GTAC 3 cut(s) 98, 725, 793
DdeI CTNAG 4 cut(s) 738, 843, 848, 911
DpnI GATC 2 cut(s) 643, 680
DpnII GATC 2 cut(s) 641, 678
EaeI YGGCCR 1 cut(s) 347
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Ecl136II GAGCTC 1 cut(s) 847
Eco130I CCWWGG 2 cut(s) 430, 459
Eco24I GRGCYC 3 cut(s) 174, 368, 849
Eco47I GGWCC 1 cut(s) 701
Eco53kI GAGCTC 1 cut(s) 847
Eco91I GGTNACC 1 cut(s) 778
EcoICRI GAGCTC 1 cut(s) 847
EcoO109I RGGNCCY 2 cut(s) 365, 701
EcoO65I GGTNACC 1 cut(s) 778
EcoRII CCWGG 1 cut(s) 893
EcoT14I CCWWGG 2 cut(s) 430, 459
EcoT22I ATGCAT 1 cut(s) 873
EcoT38I GRGCYC 3 cut(s) 174, 368, 849
ErhI CCWWGG 2 cut(s) 430, 459
FaeI CATG 7 cut(s) 9, 31, 95, 394, 514, 864, 919
FalI AAGNNNNNCTT 2 cut(s) 554, 586
FaqI GGGAC 2 cut(s) 687, 897
FatI CATG 7 cut(s) 5, 27, 91, 390, 510, 860, 915
FblI GTMKAC 1 cut(s) 35
Fnu4HI GCNGC 4 cut(s) 148, 815, 920, 980
FokI GGATG 2 cut(s) 139, 877
FriOI GRGCYC 3 cut(s) 174, 368, 849
Fsp4HI GCNGC 4 cut(s) 148, 815, 920, 980
FspBI CTAG 1 cut(s) 997
GluI GCNGC 4 cut(s) 148, 815, 920, 980
GsaI CCCAGC 2 cut(s) 169, 545
HaeIII GGCC 4 cut(s) 349, 366, 435, 982
HapII CCGG 1 cut(s) 805
Hin1II CATG 7 cut(s) 9, 31, 95, 394, 514, 864, 919
HindIII AAGCTT 1 cut(s) 833
HinfI GANTC 3 cut(s) 54, 160, 518
HpaII CCGG 1 cut(s) 805
HphI GGTGA 2 cut(s) 756, 790
Hpy166II GTNNAC 3 cut(s) 36, 793, 854
Hpy188I TCNGA 4 cut(s) 126, 318, 467, 988
Hpy188III TCNNGA 2 cut(s) 28, 957
Hpy8I GTNNAC 3 cut(s) 36, 793, 854
HpyAV CCTTC 3 cut(s) 378, 719, 993
HpyCH4III ACNGT 2 cut(s) 290, 604
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 355, 751, 814, 941, 979
HpyF3I CTNAG 4 cut(s) 738, 843, 848, 911
Hsp92II CATG 7 cut(s) 9, 31, 95, 394, 514, 864, 919
KflI GGGWCCC 1 cut(s) 701
Kzo9I GATC 2 cut(s) 641, 678
LmnI GCTCC 2 cut(s) 65, 169
Lsp1109I GCAGC 3 cut(s) 134, 826, 931
LweI GCATC 3 cut(s) 295, 732, 858
MaeI CTAG 1 cut(s) 997
MaeIII GTNAC 3 cut(s) 604, 762, 778
MalI GATC 2 cut(s) 643, 680
MbiI CCGCTC 1 cut(s) 60
MboI GATC 2 cut(s) 641, 678
MboII GAAGA 2 cut(s) 246, 365
MflI RGATCY 1 cut(s) 641
MhlI GDGCHC 5 cut(s) 174, 368, 529, 849, 856
MlsI TGGCCA 1 cut(s) 349
MluCI AATT 3 cut(s) 40, 876, 906
MluNI TGGCCA 1 cut(s) 349
MlyI GAGTC 2 cut(s) 63, 154
MmeI TCCRAC 2 cut(s) 445, 685
Mox20I TGGCCA 1 cut(s) 349
Mph1103I ATGCAT 1 cut(s) 873
MscI TGGCCA 1 cut(s) 349
MseI TTAA 2 cut(s) 221, 483
MslI CAYNNNNRTG 3 cut(s) 125, 389, 859
Msp20I TGGCCA 1 cut(s) 349
MspA1I CMGCKG 3 cut(s) 817, 922, 979
MspI CCGG 1 cut(s) 805
MspR9I CCNGG 1 cut(s) 895
MvaI CCWGG 1 cut(s) 895
MwoI GCNNNNNNNGC 6 cut(s) 11, 355, 751, 814, 941, 979
NdeII GATC 2 cut(s) 641, 678
NlaIII CATG 7 cut(s) 9, 31, 95, 394, 514, 864, 919
NlaIV GGNNCC 7 cut(s) 171, 366, 396, 436, 643, 702, 703
NmuCI GTSAC 3 cut(s) 604, 762, 778
NsiI ATGCAT 1 cut(s) 873
NspI RCATGY 3 cut(s) 9, 95, 919
PaeI GCATGC 1 cut(s) 919
PagI TCATGA 1 cut(s) 27
PfeI GAWTC 1 cut(s) 518
PkrI GCNGC 4 cut(s) 149, 816, 921, 981
PleI GAGTC 2 cut(s) 62, 154
PpsI GAGTC 2 cut(s) 62, 154
PpuMI RGGWCCY 1 cut(s) 701
PshAI GACNNNNGTC 1 cut(s) 889
Psp124BI GAGCTC 1 cut(s) 849
Psp5II RGGWCCY 1 cut(s) 701
Psp6I CCWGG 1 cut(s) 893
PspEI GGTNACC 1 cut(s) 778
PspFI CCCAGC 2 cut(s) 165, 541
PspGI CCWGG 1 cut(s) 893
PspN4I GGNNCC 7 cut(s) 171, 366, 396, 436, 643, 702, 703
PspOMI GGGCCC 1 cut(s) 364
PspPI GGNCC 4 cut(s) 364, 365, 434, 701
PspPPI RGGWCCY 1 cut(s) 701
PstNI CAGNNNCTG 1 cut(s) 733
PsuI RGATCY 1 cut(s) 641
PvuII CAGCTG 2 cut(s) 817, 922
RsaI GTAC 3 cut(s) 99, 726, 794
RsaNI GTAC 3 cut(s) 98, 725, 793
RseI CAYNNNNRTG 3 cut(s) 125, 389, 859
SacI GAGCTC 1 cut(s) 849
SaqAI TTAA 2 cut(s) 221, 483
SatI GCNGC 4 cut(s) 148, 815, 920, 980
Sau3AI GATC 2 cut(s) 641, 678
Sau96I GGNCC 4 cut(s) 364, 365, 434, 701
SchI GAGTC 2 cut(s) 63, 154
ScrFI CCNGG 1 cut(s) 895
SduI GDGCHC 5 cut(s) 174, 368, 529, 849, 856
SfaNI GCATC 3 cut(s) 295, 732, 858
SfcI CTRYAG 1 cut(s) 786
SinI GGWCC 1 cut(s) 701
SmiMI CAYNNNNRTG 3 cut(s) 125, 389, 859
SphI GCATGC 1 cut(s) 919
Sse9I AATT 3 cut(s) 40, 876, 906
SsiI CCGC 3 cut(s) 58, 413, 979
SspMI CTAG 1 cut(s) 997
SstI GAGCTC 1 cut(s) 849
StyD4I CCNGG 1 cut(s) 893
StyI CCWWGG 2 cut(s) 430, 459
TaaI ACNGT 2 cut(s) 290, 604
TaqI TCGA 1 cut(s) 958
TasI AATT 3 cut(s) 40, 876, 906
TatI WGTACW 2 cut(s) 97, 724
TauI GCSGC 1 cut(s) 982
TfiI GAWTC 1 cut(s) 518
Tru1I TTAA 2 cut(s) 221, 483
Tru9I TTAA 2 cut(s) 221, 483
TscAI CASTG 4 cut(s) 271, 295, 391, 856
TseFI GTSAC 3 cut(s) 604, 762, 778
TseI GCWGC 3 cut(s) 147, 814, 919
Tsp45I GTSAC 3 cut(s) 604, 762, 778
TspDTI ATGAA 3 cut(s) 16, 143, 285
TspRI CASTG 4 cut(s) 271, 295, 391, 856
VneI GTGCAC 1 cut(s) 852
VpaK11BI GGWCC 1 cut(s) 701
XceI RCATGY 3 cut(s) 9, 95, 919
XmiI GTMKAC 1 cut(s) 35
XspI CTAG 1 cut(s) 997
Zsp2I ATGCAT 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.