AT3G61240

Belongs to the DEAD box helicase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
22666147 .. 22669757
3611 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61240.1

Sequence Viewer

Length: 1497 bp
ATGAATACTAACAGAGGAAGATATCCACCGGGTGTTGGAACGGGTCGTGGTGCGCCTCCGAATCCAGATTATCATCAGTCGTATCGGCAGCAACAACCACCTCAAGATCAGCAGTATGTTCAACGCGGTTATTCTCAGAACCCTCAGCAGATGCAACTCCAGCAACAACATCAACAACAACAGCAGCAGCAACAGTGGTCAAGACGCCCTCAGCTTCCTGGAAACGCTAGTAACGCTAATGAGGTGGTTCAGCAGACGACCCAGCCCGAAGCTAGCAGCGATGCTAATGGTCAAGACTGGAAGGCTACGTTAAGGCTACCACCTCCTGATACTCGTTATCAGACAGCGGATGTGACAGCTACAAAGGGAAATGAATTCGAAGATTACTTTCTGAAAAGAGATCTGTTAAAGGGAATATATGAGAAGGGTTTTGAGAAGCCATCTCCAATTCAAGAAGAGAGCATTCCAATTGCTTTAACTGGTAGTGATATTCTTGCTAGAGCTAAAAACGGTACAGGAAAGACTGGTGCCTTCTGCATTCCAGTCCTCGAGAAAATTGACCCAAATAACAATGTTATTCAAGCCATGATTCTAGTTCCAACGCGAGAGCTGGCCCTTCAGACATCACAAGTTTGCAAGGAGCTTTCCAAATATTTGAATATCCAGGTTATGGTCACCACTGGCGGTACCAGTCTGAGAGATGATATTATGCGATTACATCAACCTGTGCATCTGCTGGTTGGAACTCCTGGAAGAATATTGGATCTTACAAAAAAGGGTGTCTGTGTTTTGAAAGACTGTGCGATGCTTGTAATGGATGAGGCCGACAAGCTTTTGTCTGCAGAATTCCAACCTTCTCTAGAGGAATTGATACAGTTTCTACCCCAAAATCGTCAGTTTTTGATGTTTTCCGCCACATTCCCTGTCACTGTTAAGGCTTTTAAGGATCGACATCTCCGGAAGCCCTATGTTATCAATCTCATGGATCAACTCACGCTTATGGGTGTCACGCAATATTATGCTTTTGTCGAAGAAAGACAGAAGGTTCACTGCCTCAACACACTTTTCTCTAAGCTGCAAATAAATCAATCGATAATCTTTTGCAACTCTGTCAATCGCGTGGAGCTGTTGGCTAAGAAAATCACAGAACTTGGTTATTCATGCTTCTACATTCATGCAAAGATGGTTCAAGACCACAGGAACAGAGTATTCCACGAGTTCCGCAATGGTGCTTGCAGGAATCTCGTTTGCACTGATCTGTTTACTCGAGGAATTGACATTCAAGCTGTGAATGTCGTGATCAACTTTGATTTTCCTAGGACTTCTGAGTCATATCTACACAGGGTGGGTCGATCAGGACGGTTTGGACACCTTGGATTGGCTGTGAATTTGGTAACTTATGAGGACCGTTTCAAAATGTATCAGACTGAGCAAGAACTTGGGACCGAAATCAAACCAATTCCTTCTAATATCGATCAAGCAATCTACTGTCAGTAA

Protein Analysis

498

Amino Acids

56.77

Weight (kDa)

8.66

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 148 - 312 7.2e-46 DEAD/DEAH box helicase
Helicase_C PF00271 348 - 456 7.4e-31 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1327
Acc65I GGTACC 1 cut(s) 686
AccB1I GGYRCC 2 cut(s) 527, 686
AccB7I CCANNNNNTGG 1 cut(s) 670
AccII CGCG 3 cut(s) 126, 604, 1119
AccIII TCCGGA 1 cut(s) 957
AciI CCGC 5 cut(s) 126, 347, 684, 912, 1222
AclWI GGATC 3 cut(s) 771, 954, 993
AcsI RAATTY 3 cut(s) 374, 845, 1387
AcuI CTGAAG 1 cut(s) 602
AcyI GRCGYC 1 cut(s) 205
AdeI CACNNNGTG 2 cut(s) 32, 1345
AfaI GTAC 2 cut(s) 514, 688
AfiI CCNNNNNNNGG 3 cut(s) 35, 670, 1378
AgsI TTSAA 8 cut(s) 122, 452, 581, 658, 793, 1190, 1283, 1414
AjnI CCWGG 3 cut(s) 217, 663, 748
AlwI GGATC 3 cut(s) 771, 954, 993
Ama87I CYCGRG 2 cut(s) 548, 1266
Aor13HI TCCGGA 1 cut(s) 957
AoxI GGCC 2 cut(s) 612, 822
ApeKI GCWGC 5 cut(s) 88, 184, 187, 276, 1075
ApoI RAATTY 3 cut(s) 374, 845, 1387
Asp718I GGTACC 1 cut(s) 686
AspA2I CCTAGG 1 cut(s) 1316
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 3 cut(s) 613, 1405, 1443
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 1 cut(s) 667
AsuII TTCGAA 1 cut(s) 378
AsuNHI GCTAGC 1 cut(s) 272
AvaI CYCGRG 2 cut(s) 548, 1266
AvaII GGWCC 2 cut(s) 1405, 1443
AvrII CCTAGG 1 cut(s) 1316
BanI GGYRCC 2 cut(s) 527, 686
BauI CACGAG 1 cut(s) 1214
BbvCI CCTCAGC 2 cut(s) 144, 210
BbvI GCAGC 5 cut(s) 100, 196, 199, 288, 1062
BccI CCATC 2 cut(s) 448, 1177
BcgI CGANNNNNNTGC 2 cut(s) 1225, 1259
BciT130I CCWGG 3 cut(s) 219, 665, 750
BclI TGATCA 1 cut(s) 1299
BcnI CCSGG 1 cut(s) 30
BfaI CTAG 6 cut(s) 228, 273, 498, 593, 860, 1317
BfmI CTRYAG 1 cut(s) 840
BglII AGATCT 1 cut(s) 400
BisI GCNGC 5 cut(s) 89, 185, 188, 277, 1076
BlnI CCTAGG 1 cut(s) 1316
BlsI GCNGC 5 cut(s) 90, 186, 189, 278, 1077
Bme1390I CCNGG 4 cut(s) 30, 219, 665, 750
Bme18I GGWCC 2 cut(s) 1405, 1443
BmeT110I CYCGRG 2 cut(s) 548, 1266
BmgT120I GGNCC 3 cut(s) 613, 1405, 1443
BmiI GGNNCC 3 cut(s) 529, 688, 1444
BmrFI CCNGG 4 cut(s) 30, 219, 665, 750
BmsI GCATC 4 cut(s) 141, 271, 739, 795
BmtI GCTAGC 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 143
Bpu10I CCTNAGC 2 cut(s) 144, 210
Bpu14I TTCGAA 1 cut(s) 378
BpuEI CTTGAG 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 30
Bsa29I ATCGAT 2 cut(s) 1091, 1473
BsaBI GATNNNNATC 2 cut(s) 72, 951
BsaHI GRCGYC 1 cut(s) 205
BsaJI CCNNGG 2 cut(s) 1316, 1372
BsaWI WCCGGW 1 cut(s) 957
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 670, 1378
Bse1I ACTGG 6 cut(s) 302, 484, 529, 542, 685, 690
Bse3DI GCAATG 1 cut(s) 1231
Bse8I GATNNNNATC 2 cut(s) 72, 951
BseAI TCCGGA 1 cut(s) 957
BseBI CCWGG 3 cut(s) 219, 665, 750
BseCI ATCGAT 2 cut(s) 1091, 1473
BseDI CCNNGG 2 cut(s) 1316, 1372
BseGI GGATG 2 cut(s) 355, 823
BseJI GATNNNNATC 2 cut(s) 72, 951
BseLI CCNNNNNNNGG 3 cut(s) 35, 670, 1378
BseMI GCAATG 1 cut(s) 1231
BseMII CTCAG 6 cut(s) 149, 158, 224, 686, 1317, 1419
BseNI ACTGG 6 cut(s) 302, 484, 529, 542, 685, 690
BseXI GCAGC 5 cut(s) 100, 196, 199, 288, 1062
BseYI CCCAGC 1 cut(s) 261
Bsh1236I CGCG 3 cut(s) 126, 604, 1119
BshFI GGCC 2 cut(s) 614, 824
BshNI GGYRCC 2 cut(s) 527, 686
BshVI ATCGAT 2 cut(s) 1091, 1473
BsiHKCI CYCGRG 2 cut(s) 548, 1266
BsiSI CCGG 2 cut(s) 29, 958
BslFI GGGAC 1 cut(s) 1456
BslI CCNNNNNNNGG 3 cut(s) 35, 670, 1378
BsmFI GGGAC 1 cut(s) 1456
BsmI GAATGC 2 cut(s) 462, 537
BsnI GGCC 2 cut(s) 614, 824
BsoBI CYCGRG 2 cut(s) 548, 1266
Bsp119I TTCGAA 1 cut(s) 378
Bsp13I TCCGGA 1 cut(s) 957
Bsp143I GATC 9 cut(s) 106, 400, 763, 946, 985, 1255, 1299, 1352, 1474
BspACI CCGC 5 cut(s) 126, 347, 684, 912, 1222
BspANI GGCC 2 cut(s) 614, 824
BspCNI CTCAG 6 cut(s) 148, 157, 223, 687, 1318, 1420
BspDI ATCGAT 2 cut(s) 1091, 1473
BspEI TCCGGA 1 cut(s) 957
BspFNI CGCG 3 cut(s) 126, 604, 1119
BspLI GGNNCC 3 cut(s) 529, 688, 1444
BspMAI CTGCAG 1 cut(s) 844
BspOI GCTAGC 1 cut(s) 276
BspPI GGATC 3 cut(s) 771, 954, 993
BspT104I TTCGAA 1 cut(s) 378
BspT107I GGYRCC 2 cut(s) 527, 686
BsrDI GCAATG 1 cut(s) 1231
BsrI ACTGG 6 cut(s) 302, 484, 529, 542, 685, 690
BssECI CCNNGG 2 cut(s) 1316, 1372
BssMI GATC 9 cut(s) 106, 400, 763, 946, 985, 1255, 1299, 1352, 1474
BssNI GRCGYC 1 cut(s) 205
BssSI CACGAG 1 cut(s) 1214
BssT1I CCWWGG 2 cut(s) 1316, 1372
Bst2BI CACGAG 1 cut(s) 1214
Bst2UI CCWGG 3 cut(s) 219, 665, 750
Bst4CI ACNGT 8 cut(s) 195, 512, 800, 876, 931, 1362, 1409, 1490
Bst6I CTCTTC 1 cut(s) 450
BstACI GRCGYC 1 cut(s) 205
BstBI TTCGAA 1 cut(s) 378
BstC8I GCNNGC 3 cut(s) 274, 612, 1234
BstDEI CTNAG 8 cut(s) 135, 144, 210, 695, 1071, 1134, 1326, 1428
BstEII GGTNACC 1 cut(s) 673
BstF5I GGATG 2 cut(s) 355, 823
BstFNI CGCG 3 cut(s) 126, 604, 1119
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 9 cut(s) 109, 403, 766, 949, 988, 1258, 1302, 1355, 1477
BstMBI GATC 9 cut(s) 106, 400, 763, 946, 985, 1255, 1299, 1352, 1474
BstMWI GCNNNNNNNGC 2 cut(s) 160, 233
BstNI CCWGG 3 cut(s) 219, 665, 750
BstPI GGTNACC 1 cut(s) 673
BstSCI CCNGG 4 cut(s) 28, 217, 663, 748
BstSFI CTRYAG 1 cut(s) 840
BstUI CGCG 3 cut(s) 126, 604, 1119
BstV1I GCAGC 5 cut(s) 100, 196, 199, 288, 1062
BstX2I RGATCY 2 cut(s) 400, 763
BstYI RGATCY 2 cut(s) 400, 763
Bsu15I ATCGAT 2 cut(s) 1091, 1473
BsuRI GGCC 2 cut(s) 614, 824
BsuTUI ATCGAT 2 cut(s) 1091, 1473
BtgZI GCGATG 2 cut(s) 294, 818
BtsCI GGATG 2 cut(s) 355, 823
BtsI GCAGTG 1 cut(s) 1048
BtsIMutI CAGTG 5 cut(s) 200, 678, 927, 1048, 1251
Cac8I GCNNGC 3 cut(s) 274, 612, 1234
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 3 cut(s) 613, 1405, 1443
ClaI ATCGAT 2 cut(s) 1091, 1473
CseI GACGC 1 cut(s) 213
Csp6I GTAC 2 cut(s) 513, 687
CviAII CATG 4 cut(s) 586, 982, 1161, 1175
CviQI GTAC 2 cut(s) 513, 687
DdeI CTNAG 8 cut(s) 135, 144, 210, 695, 1071, 1134, 1326, 1428
DpnI GATC 9 cut(s) 108, 402, 765, 948, 987, 1257, 1301, 1354, 1476
DpnII GATC 9 cut(s) 106, 400, 763, 946, 985, 1255, 1299, 1352, 1474
DraIII CACNNNGTG 2 cut(s) 32, 1345
DrdI GACNNNNNNGTC 1 cut(s) 1327
DseDI GACNNNNNNGTC 1 cut(s) 1327
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
EciI GGCGGA 1 cut(s) 901
Eco130I CCWWGG 2 cut(s) 1316, 1372
Eco32I GATATC 1 cut(s) 23
Eco47I GGWCC 2 cut(s) 1405, 1443
Eco57I CTGAAG 1 cut(s) 602
Eco88I CYCGRG 2 cut(s) 548, 1266
Eco91I GGTNACC 1 cut(s) 673
EcoO65I GGTNACC 1 cut(s) 673
EcoRI GAATTC 2 cut(s) 374, 845
EcoRII CCWGG 3 cut(s) 217, 663, 748
EcoRV GATATC 1 cut(s) 23
EcoT14I CCWWGG 2 cut(s) 1316, 1372
ErhI CCWWGG 2 cut(s) 1316, 1372
FaeI CATG 4 cut(s) 589, 985, 1164, 1178
FaqI GGGAC 1 cut(s) 1456
FatI CATG 4 cut(s) 585, 981, 1160, 1174
FbaI TGATCA 1 cut(s) 1299
Fnu4HI GCNGC 5 cut(s) 89, 185, 188, 277, 1076
FokI GGATG 2 cut(s) 362, 830
Fsp4HI GCNGC 5 cut(s) 89, 185, 188, 277, 1076
FspBI CTAG 6 cut(s) 228, 273, 498, 593, 860, 1317
GlaI GCGC 1 cut(s) 54
GluI GCNGC 5 cut(s) 89, 185, 188, 277, 1076
GsaI CCCAGC 1 cut(s) 265
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 2 cut(s) 614, 824
HapII CCGG 2 cut(s) 29, 958
HgaI GACGC 1 cut(s) 213
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 205
Hin1II CATG 4 cut(s) 589, 985, 1164, 1178
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HindIII AAGCTT 1 cut(s) 830
HinfI GANTC 4 cut(s) 61, 589, 1240, 1328
HpaII CCGG 2 cut(s) 29, 958
HphI GGTGA 1 cut(s) 667
Hpy166II GTNNAC 2 cut(s) 1048, 1263
Hpy188I TCNGA 8 cut(s) 60, 138, 342, 393, 621, 696, 1327, 1425
Hpy8I GTNNAC 2 cut(s) 1048, 1263
HpyAV CCTTC 7 cut(s) 295, 418, 541, 626, 864, 1036, 1473
HpyCH4III ACNGT 8 cut(s) 195, 512, 800, 876, 931, 1362, 1409, 1490
HpyCH4IV ACGT 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 233
HpyF3I CTNAG 8 cut(s) 135, 144, 210, 695, 1071, 1134, 1326, 1428
HpySE526I ACGT 1 cut(s) 308
Hsp92I GRCGYC 1 cut(s) 205
Hsp92II CATG 4 cut(s) 589, 985, 1164, 1178
HspAI GCGC 1 cut(s) 53
Kpn2I TCCGGA 1 cut(s) 957
KpnI GGTACC 1 cut(s) 690
Ksp22I TGATCA 1 cut(s) 1299
Kzo9I GATC 9 cut(s) 106, 400, 763, 946, 985, 1255, 1299, 1352, 1474
LmnI GCTCC 2 cut(s) 640, 1123
Lsp1109I GCAGC 5 cut(s) 100, 196, 199, 288, 1062
LweI GCATC 4 cut(s) 141, 271, 739, 795
MaeI CTAG 6 cut(s) 228, 273, 498, 593, 860, 1317
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 6 cut(s) 230, 352, 673, 925, 1006, 1393
MalI GATC 9 cut(s) 108, 402, 765, 948, 987, 1257, 1301, 1354, 1476
MboI GATC 9 cut(s) 106, 400, 763, 946, 985, 1255, 1299, 1352, 1474
MboII GAAGA 5 cut(s) 30, 392, 467, 765, 1043
MfeI CAATTG 1 cut(s) 468
MflI RGATCY 2 cut(s) 400, 763
MluCI AATT 9 cut(s) 374, 447, 468, 555, 845, 866, 1272, 1387, 1458
MlyI GAGTC 1 cut(s) 1337
MmeI TCCRAC 4 cut(s) 16, 623, 721, 874
MroI TCCGGA 1 cut(s) 957
MseI TTAA 5 cut(s) 311, 407, 476, 933, 942
MslI CAYNNNNRTG 1 cut(s) 998
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 2 cut(s) 29, 958
MspR9I CCNGG 4 cut(s) 30, 219, 665, 750
MunI CAATTG 1 cut(s) 468
Mva1269I GAATGC 2 cut(s) 462, 537
MvaI CCWGG 3 cut(s) 219, 665, 750
MvnI CGCG 3 cut(s) 126, 604, 1119
MwoI GCNNNNNNNGC 2 cut(s) 160, 233
NciI CCSGG 1 cut(s) 30
NdeII GATC 9 cut(s) 106, 400, 763, 946, 985, 1255, 1299, 1352, 1474
NheI GCTAGC 1 cut(s) 272
NlaIII CATG 4 cut(s) 589, 985, 1164, 1178
NlaIV GGNNCC 3 cut(s) 529, 688, 1444
NmuCI GTSAC 4 cut(s) 352, 673, 925, 1006
NspV TTCGAA 1 cut(s) 378
PaeR7I CTCGAG 2 cut(s) 548, 1266
PctI GAATGC 2 cut(s) 462, 537
PfeI GAWTC 3 cut(s) 61, 589, 1240
PflMI CCANNNNNTGG 1 cut(s) 670
PfoI TCCNGGA 2 cut(s) 217, 748
PkrI GCNGC 5 cut(s) 90, 186, 189, 278, 1077
PleI GAGTC 1 cut(s) 1336
PpsI GAGTC 1 cut(s) 1336
Psp6I CCWGG 3 cut(s) 217, 663, 748
PspEI GGTNACC 1 cut(s) 673
PspFI CCCAGC 1 cut(s) 261
PspGI CCWGG 3 cut(s) 217, 663, 748
PspN4I GGNNCC 3 cut(s) 529, 688, 1444
PspPI GGNCC 3 cut(s) 613, 1405, 1443
PspXI VCTCGAGB 1 cut(s) 1266
PstI CTGCAG 1 cut(s) 844
PsuI RGATCY 2 cut(s) 400, 763
RsaI GTAC 2 cut(s) 514, 688
RsaNI GTAC 2 cut(s) 513, 687
RseI CAYNNNNRTG 1 cut(s) 998
SaqAI TTAA 5 cut(s) 311, 407, 476, 933, 942
SatI GCNGC 5 cut(s) 89, 185, 188, 277, 1076
Sau3AI GATC 9 cut(s) 106, 400, 763, 946, 985, 1255, 1299, 1352, 1474
Sau96I GGNCC 3 cut(s) 613, 1405, 1443
SchI GAGTC 1 cut(s) 1337
ScrFI CCNGG 4 cut(s) 30, 219, 665, 750
SfaNI GCATC 4 cut(s) 141, 271, 739, 795
SfcI CTRYAG 1 cut(s) 840
Sfr274I CTCGAG 2 cut(s) 548, 1266
SfuI TTCGAA 1 cut(s) 378
SinI GGWCC 2 cut(s) 1405, 1443
SlaI CTCGAG 2 cut(s) 548, 1266
SmiMI CAYNNNNRTG 1 cut(s) 998
SmlI CTYRAG 3 cut(s) 102, 548, 1266
SmoI CTYRAG 3 cut(s) 102, 548, 1266
Sse9I AATT 9 cut(s) 374, 447, 468, 555, 845, 866, 1272, 1387, 1458
SsiI CCGC 5 cut(s) 126, 347, 684, 912, 1222
SspI AATATT 3 cut(s) 653, 759, 1016
SspMI CTAG 6 cut(s) 228, 273, 498, 593, 860, 1317
StyD4I CCNGG 4 cut(s) 28, 217, 663, 748
StyI CCWWGG 2 cut(s) 1316, 1372
TaaI ACNGT 8 cut(s) 195, 512, 800, 876, 931, 1362, 1409, 1490
TaiI ACGT 1 cut(s) 311
TaqI TCGA 8 cut(s) 378, 549, 949, 1029, 1091, 1267, 1351, 1473
TaqII GACCGA 1 cut(s) 1460
TasI AATT 9 cut(s) 374, 447, 468, 555, 845, 866, 1272, 1387, 1458
TfiI GAWTC 3 cut(s) 61, 589, 1240
Tru1I TTAA 5 cut(s) 311, 407, 476, 933, 942
Tru9I TTAA 5 cut(s) 311, 407, 476, 933, 942
TscAI CASTG 5 cut(s) 200, 685, 934, 1055, 1258
TseFI GTSAC 4 cut(s) 352, 673, 925, 1006
TseI GCWGC 5 cut(s) 88, 184, 187, 276, 1075
Tsp45I GTSAC 4 cut(s) 352, 673, 925, 1006
TspDTI ATGAA 4 cut(s) 17, 387, 1149, 1163
TspRI CASTG 5 cut(s) 200, 685, 934, 1055, 1258
Van91I CCANNNNNTGG 1 cut(s) 670
VpaK11BI GGWCC 2 cut(s) 1405, 1443
XapI RAATTY 3 cut(s) 374, 845, 1387
XbaI TCTAGA 1 cut(s) 859
XhoI CTCGAG 2 cut(s) 548, 1266
XmaJI CCTAGG 1 cut(s) 1316
XspI CTAG 6 cut(s) 228, 273, 498, 593, 860, 1317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.