Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006588

Physical Location & Seq

Genomic Coordinates Reverse (-)

8946172 .. 8951009

Gene Structure 4838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g07950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGAACAGTAATAGAGGGAGGTACCCGCCGGGGATCGGAGCTGGGAGGGGCGGCGGCATGAATGCGAACCCTCCATTCCAGTCCCGTCCGCCGCATCAGCAGCAGTATGTACAGAGGAACCCTTTGCCGAACCATCATCACCAGCAGCAGTACTTTCAGCAGCAGCAGCAACACCAACAGCATCAACAGCAGCAACACCAACAGCAGCAGCTACAACAGCAACAGCAGTGGCTCAGGAGAGGCCAGTTGGGTGGGAGTACGAGTGCTGATTCGGCCGTTGATGAGGTGGAAAAGACCGTGCAGTCGGAAGCTGTCGACCCGAGTTCGCAAGATTGGAAGGCGAGGTTAAAGATTCCACCAGCTGATACACGTTTCAGAACAGAGGATGTAACGGCAACTAAAGGAAATGAGTTTGAGGATTATTTTCTGAAACGTGAGCTGCTGATGGGAATATATGAGAAGGGATTTGAAAGACCATCTCCTATTCAGGAAGAAAGTATTCCAATTGCTTTAACTGGTAGTGATATTCTTGCTAGGGCTAAAAATGGGACGGGAAAGACAGCTGCATTTTGCATCCCTGCATTGGAAAAAATTGATCAAGATAACAATGTGATACAAGTTGTTATTCTTGTTCCAACTCGTGAGTTGGCTCTTCAAACATCACAAGTCTGTAAGGAGCTAGGGAAGCATTTGCAAATTCAAGTTATGGTTACAACTGGAGGCACCAGCTTAAAGGATGATATCATGCGTTTATATCAACCAGTTCACTTGCTTGTTGGAACTCCTGGAAGAATTTTAGATCTTGCAAAGAAAGGTGTTTGCATCTTGAAAGATTGTTCTATGCTTGTTATGGATGAGGCTGATAAACTTATGTCCCCGGAATTTCAACCTTCAGTAGAGCAGTTGATCCGCTTCTTACATTCACATCGACAGATCTTGATGTTTTCAGCTACATTTCCTGTTACTGTCAAGGACTTTAAGGATAGATATCTGAAAAAACCGTATGTTATCAATCTTATGGATGAGCTTACTCTAAAGGGTATTACACAATTTTACGCCTTTGTCGAGGAGAGACAGAAAGTCCACTGCCTAAACACCCTTTTCTCTAAGCTTCAAATAAACCAGTCAATCATATTCTGTAACTCTGTGAATCGGGTCGAATTGTTGGCCAAGAAAATTACAGAACTTGGCTATTCTTGTTTCTATATTCATGCAAAGATGCTGCAAGACCATCGTAACAGAGTATTTCATGACTTCCGTAATGGTGCATGCAGAAATCTTGTTTGTACCGATCTCTTTACAAGAGGAATAGATATTCAAGCAGTTAATGTTGTCATTAACTTTGATTTTCCGAAGAACTCAGAGACATATCTTCACAGGGTTGGTCGCTCTGGAAGGTTTGGACACCTTGGTTTAGCTGTGAATTTGATCACCTATGAGGACCGTTTCAACTTGTATAGAATTGAGCAAGAACTTGGCACTGAGATAAAGCAAATTCCTCCCCATATCGATCAGGCAATTTATTGCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

511

Amino Acids

58.45

Weight (kDa)

8.76

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45810 AT3G61240 AT3G61240 AT4G00660 AT4G00660
fragaria_vesca	FvH4_7g13810 FvH4_7g13810 FvH4_7g13810 FvH4_7g13810 FvH4_7g13810 FvH4_7g13810
malus_domestica	MD01G1054200.v1.1 MD07G1141100.v1.1
prunus_persica	Prupe.2G163800_v2.0.a1
pyrus_communis	pycom01g07950 pycom07g13890
rosa_chinensis	RchiOBHm_Chr1g0353991
rosa_laevigata	RLG00000028238
rosa_multiflora	Rmu_sc0001763.1_g000011
rosa_roxburghii	Rroxscaffold_4G00301390
rosa_rugosa	Rorug01G0239700
rosa_samantha	Rh1AG251200 Rh1BG222800 Rh1CG235400 Rh1DG249700
rosa_wichuraiana	Rw1G021910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	301
Acc65I	GGTACC	1 cut(s)	21
AccB1I	GGYRCC	2 cut(s)	21, 722
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	6 cut(s)	26, 51, 54, 89, 92, 910
AclWI	GGATC	2 cut(s)	41, 901
AcoI	YGGCCR	2 cut(s)	273, 1167
AcsI	RAATTY	5 cut(s)	696, 792, 881, 1423, 1494
AcuI	CTGAAG	1 cut(s)	876
AfaI	GTAC	5 cut(s)	23, 111, 152, 259, 1288
AfiI	CCNNNNNNNGG	2 cut(s)	35, 583
AflIII	ACRYGT	1 cut(s)	368
AgsI	TTSAA	8 cut(s)	470, 656, 701, 829, 887, 1115, 1319, 1450
AhdI	GACNNNNNGTC	1 cut(s)	1079
AjnI	CCWGG	1 cut(s)	784
Alw26I	GTCTC	2 cut(s)	1066, 1358
AlwI	GGATC	2 cut(s)	41, 901
Ama87I	CYCGRG	1 cut(s)	319
AoxI	GGCC	3 cut(s)	241, 273, 1167
ApoI	RAATTY	5 cut(s)	696, 792, 881, 1423, 1494
Asp700I	GAANNNNTTC	1 cut(s)	498
Asp718I	GGTACC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	1441
AsuC2I	CCSGG	2 cut(s)	30, 878
AsuHPI	GGTGA	2 cut(s)	131, 1423
AvaI	CYCGRG	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	1441
BalI	TGGCCA	1 cut(s)	1169
BanI	GGYRCC	2 cut(s)	21, 722
BauI	CACGAG	1 cut(s)	639
BccI	CCATC	4 cut(s)	141, 439, 484, 1239
BceAI	ACGGC	2 cut(s)	260, 408
BcgI	CGANNNNNNTGC	2 cut(s)	1214, 1248
BciT130I	CCWGG	1 cut(s)	786
BclI	TGATCA	2 cut(s)	595, 1428
BcnI	CCSGG	2 cut(s)	30, 878
BcoDI	GTCTC	2 cut(s)	1066, 1358
BfaI	CTAG	2 cut(s)	534, 680
BglII	AGATCT	2 cut(s)	799, 933
BmcAI	AGTACT	1 cut(s)	152
Bme1390I	CCNGG	3 cut(s)	30, 786, 878
Bme18I	GGWCC	1 cut(s)	1441
BmeRI	GACNNNNNGTC	1 cut(s)	1079
BmeT110I	CYCGRG	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	1441
BmiI	GGNNCC	3 cut(s)	23, 119, 724
BmrFI	CCNGG	3 cut(s)	30, 786, 878
BmsI	GCATC	5 cut(s)	103, 190, 582, 831, 1209
BpmI	CTGGAG	1 cut(s)	738
Bpu10I	CCTNAGC	1 cut(s)	233
BpuMI	CCSGG	2 cut(s)	30, 878
Bsa29I	ATCGAT	1 cut(s)	1509
BsaBI	GATNNNNATC	1 cut(s)	987
BsaJI	CCNNGG	3 cut(s)	29, 876, 1408
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 583
Bse118I	RCCGGY	1 cut(s)	1527
Bse1I	ACTGG	6 cut(s)	79, 244, 520, 721, 761, 1123
Bse8I	GATNNNNATC	1 cut(s)	987
BseBI	CCWGG	1 cut(s)	786
BseCI	ATCGAT	1 cut(s)	1509
BseDI	CCNNGG	3 cut(s)	29, 876, 1408
BseGI	GGATG	5 cut(s)	391, 573, 742, 859, 1027
BseJI	GATNNNNATC	1 cut(s)	987
BseLI	CCNNNNNNNGG	2 cut(s)	35, 583
BseMII	CTCAG	3 cut(s)	247, 1374, 1473
BseNI	ACTGG	6 cut(s)	79, 244, 520, 721, 761, 1123
BseRI	GAGGAG	1 cut(s)	1082
BseX3I	CGGCCG	1 cut(s)	273
BseYI	CCCAGC	1 cut(s)	41
BsgI	GTGCAG	1 cut(s)	320
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	3 cut(s)	243, 275, 1169
BshNI	GGYRCC	2 cut(s)	21, 722
BshVI	ATCGAT	1 cut(s)	1509
BsiEI	CGRYCG	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	319
BsiSI	CCGG	3 cut(s)	29, 878, 1528
BslFI	GGGAC	3 cut(s)	67, 562, 859
BslI	CCNNNNNNNGG	2 cut(s)	35, 583
BsmAI	GTCTC	2 cut(s)	1066, 1358
BsmFI	GGGAC	3 cut(s)	67, 562, 859
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	3 cut(s)	243, 275, 1169
BsoBI	CYCGRG	1 cut(s)	319
Bsp1407I	TGTACA	1 cut(s)	109
Bsp143I	GATC	8 cut(s)	33, 595, 799, 906, 933, 1291, 1428, 1510
BspACI	CCGC	6 cut(s)	26, 51, 54, 89, 92, 910
BspANI	GGCC	3 cut(s)	243, 275, 1169
BspCNI	CTCAG	3 cut(s)	246, 1373, 1474
BspDI	ATCGAT	1 cut(s)	1509
BspHI	TCATGA	1 cut(s)	1249
BspLI	GGNNCC	3 cut(s)	23, 119, 724
BspPI	GGATC	2 cut(s)	41, 901
BspQI	GCTCTTC	1 cut(s)	657
BspT107I	GGYRCC	2 cut(s)	21, 722
BsrFI	RCCGGY	1 cut(s)	1527
BsrGI	TGTACA	1 cut(s)	109
BsrI	ACTGG	6 cut(s)	79, 244, 520, 721, 761, 1123
BssAI	RCCGGY	1 cut(s)	1527
BssECI	CCNNGG	3 cut(s)	29, 876, 1408
BssMI	GATC	8 cut(s)	33, 595, 799, 906, 933, 1291, 1428, 1510
BssSI	CACGAG	1 cut(s)	639
BssT1I	CCWWGG	1 cut(s)	1408
Bst2BI	CACGAG	1 cut(s)	639
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	5 cut(s)	8, 298, 967, 1002, 1445
Bst6I	CTCTTC	1 cut(s)	657
BstAUI	TGTACA	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	1270
BstDEI	CTNAG	4 cut(s)	233, 1107, 1360, 1482
BstF5I	GGATG	5 cut(s)	391, 573, 742, 859, 1027
BstKTI	GATC	8 cut(s)	36, 598, 802, 909, 936, 1294, 1431, 1513
BstMAI	GTCTC	2 cut(s)	1066, 1358
BstMBI	GATC	8 cut(s)	33, 595, 799, 906, 933, 1291, 1428, 1510
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	7 cut(s)	97, 100, 166, 187, 217, 272, 685
BstNI	CCWGG	1 cut(s)	786
BstNSI	RCATGY	1 cut(s)	1272
BstSCI	CCNGG	3 cut(s)	28, 784, 876
BstX2I	RGATCY	2 cut(s)	799, 933
BstXI	CCANNNNNNTGG	1 cut(s)	251
BstYI	RGATCY	2 cut(s)	799, 933
BstZI	CGGCCG	1 cut(s)	273
Bsu15I	ATCGAT	1 cut(s)	1509
BsuRI	GGCC	3 cut(s)	243, 275, 1169
BsuTUI	ATCGAT	1 cut(s)	1509
BtsCI	GGATG	5 cut(s)	391, 573, 742, 859, 1027
BtsI	GCAGTG	2 cut(s)	233, 1084
BtsIMutI	CAGTG	3 cut(s)	233, 1084, 1479
Cac8I	GCNNGC	1 cut(s)	1270
CciI	TCATGA	1 cut(s)	1249
Cfr10I	RCCGGY	1 cut(s)	1527
Cfr13I	GGNCC	1 cut(s)	1441
ClaI	ATCGAT	1 cut(s)	1509
Csp6I	GTAC	5 cut(s)	22, 110, 151, 258, 1287
CspCI	CAANNNNNGTGG	2 cut(s)	209, 244
CviAII	CATG	5 cut(s)	58, 745, 1211, 1250, 1269
CviQI	GTAC	5 cut(s)	22, 110, 151, 258, 1287
DdeI	CTNAG	4 cut(s)	233, 1107, 1360, 1482
DpnI	GATC	8 cut(s)	35, 597, 801, 908, 935, 1293, 1430, 1512
DpnII	GATC	8 cut(s)	33, 595, 799, 906, 933, 1291, 1428, 1510
DrdI	GACNNNNNNGTC	1 cut(s)	301
DriI	GACNNNNNGTC	1 cut(s)	1079
DseDI	GACNNNNNNGTC	1 cut(s)	301
EaeI	YGGCCR	2 cut(s)	273, 1167
EagI	CGGCCG	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	657
Eam1105I	GACNNNNNGTC	1 cut(s)	1079
EarI	CTCTTC	1 cut(s)	657
EciI	GGCGGA	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	1408
Eco32I	GATATC	2 cut(s)	742, 989
Eco47I	GGWCC	1 cut(s)	1441
Eco52I	CGGCCG	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	876
Eco88I	CYCGRG	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	784
EcoRV	GATATC	2 cut(s)	742, 989
EcoT14I	CCWWGG	1 cut(s)	1408
ErhI	CCWWGG	1 cut(s)	1408
FaeI	CATG	5 cut(s)	61, 748, 1214, 1253, 1272
FaqI	GGGAC	3 cut(s)	67, 562, 859
FatI	CATG	5 cut(s)	57, 744, 1210, 1249, 1268
FauI	CCCGC	1 cut(s)	33
FbaI	TGATCA	2 cut(s)	595, 1428
FblI	GTMKAC	1 cut(s)	315
FokI	GGATG	5 cut(s)	398, 560, 749, 866, 1034
FspBI	CTAG	2 cut(s)	534, 680
GsaI	CCCAGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	738
HaeIII	GGCC	3 cut(s)	243, 275, 1169
HapII	CCGG	3 cut(s)	29, 878, 1528
Hin1II	CATG	5 cut(s)	61, 748, 1214, 1253, 1272
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	1109
HinfI	GANTC	3 cut(s)	269, 352, 1150
HpaII	CCGG	3 cut(s)	29, 878, 1528
HphI	GGTGA	2 cut(s)	131, 1423
Hpy166II	GTNNAC	3 cut(s)	316, 766, 1084
Hpy188I	TCNGA	7 cut(s)	38, 307, 377, 429, 993, 1353, 1363
Hpy188III	TCNNGA	8 cut(s)	235, 488, 599, 641, 826, 937, 1250, 1392
Hpy8I	GTNNAC	3 cut(s)	316, 766, 1084
HpyAV	CCTTC	4 cut(s)	331, 454, 900, 1389
HpyCH4III	ACNGT	5 cut(s)	8, 298, 967, 1002, 1445
HpyCH4IV	ACGT	2 cut(s)	370, 433
HpyF10VI	GCNNNNNNNGC	7 cut(s)	97, 100, 166, 187, 217, 272, 685
HpyF3I	CTNAG	4 cut(s)	233, 1107, 1360, 1482
HpySE526I	ACGT	2 cut(s)	370, 433
Hsp92II	CATG	5 cut(s)	61, 748, 1214, 1253, 1272
KpnI	GGTACC	1 cut(s)	25
Ksp22I	TGATCA	2 cut(s)	595, 1428
Kzo9I	GATC	8 cut(s)	33, 595, 799, 906, 933, 1291, 1428, 1510
LguI	GCTCTTC	1 cut(s)	657
LmnI	GCTCC	2 cut(s)	38, 676
LweI	GCATC	5 cut(s)	103, 190, 582, 831, 1209
MaeI	CTAG	2 cut(s)	534, 680
MaeII	ACGT	2 cut(s)	370, 433
MaeIII	GTNAC	5 cut(s)	388, 709, 961, 1139, 1235
MalI	GATC	8 cut(s)	35, 597, 801, 908, 935, 1293, 1430, 1512
MboI	GATC	8 cut(s)	33, 595, 799, 906, 933, 1291, 1428, 1510
MboII	GAAGA	5 cut(s)	503, 644, 801, 1364, 1366
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	2 cut(s)	799, 933
MlsI	TGGCCA	1 cut(s)	1169
MluNI	TGGCCA	1 cut(s)	1169
MmeI	TCCRAC	3 cut(s)	285, 659, 757
Mox20I	TGGCCA	1 cut(s)	1169
MroXI	GAANNNNTTC	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	1169
MseI	TTAA	6 cut(s)	347, 512, 731, 978, 1326, 1338
Msp20I	TGGCCA	1 cut(s)	1169
MspA1I	CMGCKG	2 cut(s)	362, 563
MspI	CCGG	3 cut(s)	29, 878, 1528
MspR9I	CCNGG	3 cut(s)	30, 786, 878
MunI	CAATTG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	786
MwoI	GCNNNNNNNGC	7 cut(s)	97, 100, 166, 187, 217, 272, 685
NciI	CCSGG	2 cut(s)	30, 878
NdeII	GATC	8 cut(s)	33, 595, 799, 906, 933, 1291, 1428, 1510
NlaIII	CATG	5 cut(s)	61, 748, 1214, 1253, 1272
NlaIV	GGNNCC	3 cut(s)	23, 119, 724
NspI	RCATGY	1 cut(s)	1272
PaeI	GCATGC	1 cut(s)	1272
PagI	TCATGA	1 cut(s)	1249
PciSI	GCTCTTC	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	1 cut(s)	1062
PctI	GAATGC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	3 cut(s)	269, 352, 1150
PfoI	TCCNGGA	1 cut(s)	784
Psp6I	CCWGG	1 cut(s)	784
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	784
PspN4I	GGNNCC	3 cut(s)	23, 119, 724
PspPI	GGNCC	1 cut(s)	1441
PsuI	RGATCY	2 cut(s)	799, 933
PvuII	CAGCTG	2 cut(s)	362, 563
RsaI	GTAC	5 cut(s)	23, 111, 152, 259, 1288
RsaNI	GTAC	5 cut(s)	22, 110, 151, 258, 1287
SalI	GTCGAC	1 cut(s)	314
SapI	GCTCTTC	1 cut(s)	657
SaqAI	TTAA	6 cut(s)	347, 512, 731, 978, 1326, 1338
Sau3AI	GATC	8 cut(s)	33, 595, 799, 906, 933, 1291, 1428, 1510
Sau96I	GGNCC	1 cut(s)	1441
ScaI	AGTACT	1 cut(s)	152
ScrFI	CCNGG	3 cut(s)	30, 786, 878
SfaNI	GCATC	5 cut(s)	103, 190, 582, 831, 1209
SinI	GGWCC	1 cut(s)	1441
SphI	GCATGC	1 cut(s)	1272
SsiI	CCGC	6 cut(s)	26, 51, 54, 89, 92, 910
SspMI	CTAG	2 cut(s)	534, 680
StyD4I	CCNGG	3 cut(s)	28, 784, 876
StyI	CCWWGG	1 cut(s)	1408
TaaI	ACNGT	5 cut(s)	8, 298, 967, 1002, 1445
TaiI	ACGT	2 cut(s)	373, 436
TaqI	TCGA	5 cut(s)	315, 928, 1065, 1158, 1509
TatI	WGTACW	2 cut(s)	109, 150
TauI	GCSGC	3 cut(s)	54, 57, 94
TfiI	GAWTC	3 cut(s)	269, 352, 1150
Tru1I	TTAA	6 cut(s)	347, 512, 731, 978, 1326, 1338
Tru9I	TTAA	6 cut(s)	347, 512, 731, 978, 1326, 1338
TscAI	CASTG	3 cut(s)	233, 1091, 1486
TspDTI	ATGAA	4 cut(s)	17, 74, 1199, 1238
TspGWI	ACGGA	1 cut(s)	1247
TspRI	CASTG	3 cut(s)	233, 1091, 1486
VpaK11BI	GGWCC	1 cut(s)	1441
XapI	RAATTY	5 cut(s)	696, 792, 881, 1423, 1494
XceI	RCATGY	1 cut(s)	1272
XmiI	GTMKAC	1 cut(s)	315
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	2 cut(s)	534, 680
ZrmI	AGTACT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.