AT4G00660

Belongs to the DEAD box helicase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
274252 .. 278737
4486 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G00660.2

Sequence Viewer

Length: 1518 bp
ATGAACAATCGAGGAAGGTACCCTCCTGGAATTGGCGCTGGCCGTGGAGCCTTTAACCCTAACCCTAATTACCAATCACGGTCGGGTTATCAACAACATCCGCCGCCCCAATACGTTCAACGCGGTAATTACGCTCAGAATCACCAACAACAGTTTCAACAAGCGCCGTCTCAGCCGCATCAATACCAACAGCAACAGCAGCAACAACAACAATGGCTTCGAAGAGGTCAGATCCCCGGCGGTAACAGTAACGGTGACGCTGTTGTAGAAGTTGAGAAAACTGTTCAATCCGAAGTTATCGACCCAAACTCGGAAGATTGGAAAGCAAGGCTAAAACTACCTGCACCTGATACTCGATACAGAACAGAGGATGTGACAGCCACCAAAGGGAACGAGTTTGAAGATTACTTTTTGAAACGGGAGCTTCTCATGGGAATATATGAGAAGGGTTTTGAAAGACCTTCTCCTATTCAGGAAGAGAGTATTCCAATTGCCTTAACTGGTAGAGATATCCTTGCCAGAGCAAAGAACGGGACTGGAAAGACCGCCGCCTTTTGTATTCCTGTCTTGGAAAAAATTGACCAAGATAACAACGTTATTCAAGCTGTTATAATTGTTCCGACTCGAGAGTTAGCCCTTCAGACATCACAGGTCTGTAAAGAGCTGGGTAAGCATTTGAAGATTCAAGTCATGGTGACCACTGGTGGCACCAGTCTGAAAGACGATATCATGCGTTTGTATCAGCCTGTTCATTTACTGGTAGGAACTCCTGGGAGAATTCTGGATCTTACCAAGAAAGGTGTTTGTGTTTTAAAAGATTGTTCGGTGCTTGTTATGGATGAGGCTGACAAGCTTTTGTCTCAAGAGTTCCAACCTTCAGTGGAACATTTGATTAGCTTTCTTCCAGAAAGTCGTCAGATTTTGATGTTCTCAGCCACCTTCCCTGTCACTGTCAAGGATTTTAAGGATAGGTTTCTGACGAATCCTTACGTCATCAATCTCATGGATGAACTTACGCTCAAGGGTATTACCCAATTCTATGCTTTCGTTGAAGAAAGACAGAAAATTCATTGCTTGAATACACTATTCTCCAAGCTGCAAATTAACCAATCAATCATATTCTGCAATTCTGTAAATCGTGTGGAGCTCTTAGCCAAGAAAATCACAGAACTTGGGTATTCATGCTTTTACATCCATGCAAAGATGCTTCAAGACCACCGAAACAGAGTGTTCCATGACTTCCGGAATGGTGCATGCCGTAATCTCGTGTGTACTGACTTGTTCACACGTGGTATTGACATTCAAGCCGTCAATGTGGTGATAAACTTTGATTTCCCAAAGAATGCTGAAACTTATCTCCATAGGGTTGGACGATCAGGAAGGTTTGGCCATCTTGGTCTAGCTGTGAATCTTATCACCTATGAAGATCGATTTAACCTTTACCGGATTGAGCAAGAGCTTGGAACGGAGATCAAGCAAATTCCTCCACATATCGATCAGGCAATTTATTGCCAATAA

Protein Analysis

505

Amino Acids

57.69

Weight (kDa)

8.4

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 155 - 320 1.6e-48 DEAD/DEAH box helicase
Helicase_C PF00271 355 - 463 6.7e-32 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 611
Acc36I ACCTGC 1 cut(s) 349
Acc65I GGTACC 1 cut(s) 18
AccB1I GGYRCC 2 cut(s) 18, 707
AccII CGCG 1 cut(s) 123
AccIII TCCGGA 1 cut(s) 1242
AciI CCGC 7 cut(s) 101, 104, 123, 176, 240, 546, 549
AclI AACGTT 1 cut(s) 594
AclWI GGATC 2 cut(s) 226, 792
AcoI YGGCCR 2 cut(s) 40, 1387
AcsI RAATTY 3 cut(s) 777, 1065, 1479
AcuI CTGAAG 2 cut(s) 623, 861
AcvI CACGTG 1 cut(s) 1289
AfaI GTAC 2 cut(s) 20, 1273
AfiI CCNNNNNNNGG 3 cut(s) 32, 310, 387
AflIII ACRYGT 1 cut(s) 1286
AjnI CCWGG 2 cut(s) 25, 769
AjuI GAANNNNNNNTTGG 2 cut(s) 138, 170
AluBI AGCT 9 cut(s) 424, 605, 664, 853, 897, 1096, 1147, 1403, 1459
AluI AGCT 9 cut(s) 424, 605, 664, 853, 897, 1096, 1147, 1403, 1459
Alw21I GWGCWC 1 cut(s) 1149
Alw26I GTCTC 2 cut(s) 174, 864
AlwI GGATC 2 cut(s) 226, 792
Ama87I CYCGRG 1 cut(s) 624
Aor13HI TCCGGA 1 cut(s) 1242
AoxI GGCC 2 cut(s) 40, 1387
ApeKI GCWGC 2 cut(s) 199, 1096
ApoI RAATTY 3 cut(s) 777, 1065, 1479
Asp718I GGTACC 1 cut(s) 18
AspLEI GCGC 2 cut(s) 38, 166
AsuC2I CCSGG 1 cut(s) 237
AsuHPI GGTGA 5 cut(s) 134, 266, 706, 1330, 1408
AsuII TTCGAA 1 cut(s) 220
AvaI CYCGRG 1 cut(s) 624
BalI TGGCCA 1 cut(s) 1389
BanI GGYRCC 2 cut(s) 18, 707
BanII GRGCYC 1 cut(s) 1149
BauI CACGAG 1 cut(s) 1265
BbrPI CACGTG 1 cut(s) 1289
Bbv12I GWGCWC 1 cut(s) 1149
BbvI GCAGC 2 cut(s) 211, 1083
BccI CCATC 1 cut(s) 1398
BceAI ACGGC 4 cut(s) 27, 151, 1242, 1292
BciT130I CCWGG 2 cut(s) 27, 771
BcnI CCSGG 1 cut(s) 237
BcoDI GTCTC 2 cut(s) 174, 864
BfaI CTAG 1 cut(s) 1400
BfoI RGCGCY 2 cut(s) 39, 167
BfuAI ACCTGC 1 cut(s) 349
BisI GCNGC 5 cut(s) 104, 176, 200, 549, 1097
BlsI GCNGC 5 cut(s) 105, 177, 201, 550, 1098
Bme1390I CCNGG 3 cut(s) 27, 237, 771
BmeT110I CYCGRG 1 cut(s) 624
BmiI GGNNCC 3 cut(s) 20, 49, 709
BmrFI CCNGG 3 cut(s) 27, 237, 771
BmsI GCATC 2 cut(s) 187, 1194
Bpu14I TTCGAA 1 cut(s) 220
BpuEI CTTGAG 2 cut(s) 846, 1004
BpuMI CCSGG 1 cut(s) 237
Bsa29I ATCGAT 2 cut(s) 1429, 1494
BsaAI YACGTR 1 cut(s) 1289
BsaJI CCNNGG 3 cut(s) 43, 235, 770
BsaWI WCCGGW 2 cut(s) 1242, 1443
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 310, 387
Bse1I ACTGG 5 cut(s) 505, 541, 706, 711, 762
Bse3DI GCAATG 1 cut(s) 1069
BseAI TCCGGA 1 cut(s) 1242
BseBI CCWGG 2 cut(s) 27, 771
BseCI ATCGAT 2 cut(s) 1429, 1494
BseDI CCNNGG 3 cut(s) 43, 235, 770
BseGI GGATG 5 cut(s) 97, 376, 844, 1012, 1191
BseLI CCNNNNNNNGG 3 cut(s) 32, 310, 387
BseMI GCAATG 1 cut(s) 1069
BseMII CTCAG 3 cut(s) 149, 185, 945
BseNI ACTGG 5 cut(s) 505, 541, 706, 711, 762
BseXI GCAGC 2 cut(s) 211, 1083
BseYI CCCAGC 1 cut(s) 664
BsgI GTGCAG 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 2 cut(s) 42, 1389
BshNI GGYRCC 2 cut(s) 18, 707
BshVI ATCGAT 2 cut(s) 1429, 1494
BsiEI CGRYCG 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 1149
BsiHKCI CYCGRG 1 cut(s) 624
BsiSI CCGG 3 cut(s) 237, 1243, 1444
BslFI GGGAC 1 cut(s) 547
BslI CCNNNNNNNGG 3 cut(s) 32, 310, 387
BsmAI GTCTC 2 cut(s) 174, 864
BsmBI CGTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 547
BsmI GAATGC 1 cut(s) 1348
BsnI GGCC 2 cut(s) 42, 1389
BsoBI CYCGRG 1 cut(s) 624
Bsp119I TTCGAA 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 1149
Bsp13I TCCGGA 1 cut(s) 1242
Bsp143I GATC 6 cut(s) 231, 784, 1373, 1426, 1470, 1495
BspACI CCGC 7 cut(s) 101, 104, 123, 176, 240, 546, 549
BspANI GGCC 2 cut(s) 42, 1389
BspCNI CTCAG 3 cut(s) 148, 184, 944
BspDI ATCGAT 2 cut(s) 1429, 1494
BspEI TCCGGA 1 cut(s) 1242
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 3 cut(s) 20, 49, 709
BspMI ACCTGC 1 cut(s) 349
BspPI GGATC 2 cut(s) 226, 792
BspT104I TTCGAA 1 cut(s) 220
BspT107I GGYRCC 2 cut(s) 18, 707
BsrDI GCAATG 1 cut(s) 1069
BsrI ACTGG 5 cut(s) 505, 541, 706, 711, 762
BssECI CCNNGG 3 cut(s) 43, 235, 770
BssMI GATC 6 cut(s) 231, 784, 1373, 1426, 1470, 1495
BssSI CACGAG 1 cut(s) 1265
Bst2BI CACGAG 1 cut(s) 1265
Bst2UI CCWGG 2 cut(s) 27, 771
Bst4CI ACNGT 6 cut(s) 81, 153, 248, 254, 283, 952
Bst6I CTCTTC 2 cut(s) 217, 471
BstBAI YACGTR 1 cut(s) 1289
BstBI TTCGAA 1 cut(s) 220
BstC8I GCNNGC 2 cut(s) 40, 1255
BstDEI CTNAG 4 cut(s) 135, 171, 931, 1150
BstDSI CCRYGG 1 cut(s) 43
BstEII GGTNACC 1 cut(s) 694
BstF5I GGATG 5 cut(s) 97, 376, 844, 1012, 1191
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 2 cut(s) 39, 167
BstHHI GCGC 2 cut(s) 38, 166
BstKTI GATC 6 cut(s) 234, 787, 1376, 1429, 1473, 1498
BstMAI GTCTC 2 cut(s) 174, 864
BstMBI GATC 6 cut(s) 231, 784, 1373, 1426, 1470, 1495
BstMCI CGRYCG 1 cut(s) 83
BstMWI GCNNNNNNNGC 3 cut(s) 172, 199, 670
BstNI CCWGG 2 cut(s) 27, 771
BstNSI RCATGY 1 cut(s) 1257
BstPI GGTNACC 1 cut(s) 694
BstSCI CCNGG 3 cut(s) 25, 235, 769
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 211, 1083
BstX2I RGATCY 2 cut(s) 231, 784
BstXI CCANNNNNNTGG 1 cut(s) 1367
BstYI RGATCY 2 cut(s) 231, 784
Bsu15I ATCGAT 2 cut(s) 1429, 1494
BsuRI GGCC 2 cut(s) 42, 1389
BsuTUI ATCGAT 2 cut(s) 1429, 1494
BtgI CCRYGG 1 cut(s) 43
BtsCI GGATG 5 cut(s) 97, 376, 844, 1012, 1191
BtsIMutI CAGTG 3 cut(s) 699, 885, 948
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 2 cut(s) 40, 1255
CfoI GCGC 2 cut(s) 38, 166
ClaI ATCGAT 2 cut(s) 1429, 1494
CseI GACGC 1 cut(s) 266
Csp6I GTAC 2 cut(s) 19, 1272
CviAII CATG 8 cut(s) 430, 691, 730, 1003, 1182, 1196, 1235, 1254
CviQI GTAC 2 cut(s) 19, 1272
DdeI CTNAG 4 cut(s) 135, 171, 931, 1150
DpnI GATC 6 cut(s) 233, 786, 1375, 1428, 1472, 1497
DpnII GATC 6 cut(s) 231, 784, 1373, 1426, 1470, 1495
DraI TTTAAA 1 cut(s) 813
EaeI YGGCCR 2 cut(s) 40, 1387
Eam1104I CTCTTC 2 cut(s) 217, 471
EarI CTCTTC 2 cut(s) 217, 471
EciI GGCGGA 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 1147
Eco24I GRGCYC 1 cut(s) 1149
Eco32I GATATC 2 cut(s) 511, 727
Eco53kI GAGCTC 1 cut(s) 1147
Eco57I CTGAAG 2 cut(s) 623, 861
Eco72I CACGTG 1 cut(s) 1289
Eco88I CYCGRG 1 cut(s) 624
Eco91I GGTNACC 1 cut(s) 694
EcoICRI GAGCTC 1 cut(s) 1147
EcoO65I GGTNACC 1 cut(s) 694
EcoRI GAATTC 1 cut(s) 777
EcoRII CCWGG 2 cut(s) 25, 769
EcoRV GATATC 2 cut(s) 511, 727
EcoT38I GRGCYC 1 cut(s) 1149
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 8 cut(s) 433, 694, 733, 1006, 1185, 1199, 1238, 1257
FaqI GGGAC 1 cut(s) 547
FatI CATG 8 cut(s) 429, 690, 729, 1002, 1181, 1195, 1234, 1253
Fnu4HI GCNGC 5 cut(s) 104, 176, 200, 549, 1097
FokI GGATG 5 cut(s) 84, 383, 851, 1019, 1178
FriOI GRGCYC 1 cut(s) 1149
Fsp4HI GCNGC 5 cut(s) 104, 176, 200, 549, 1097
FspBI CTAG 1 cut(s) 1400
GlaI GCGC 2 cut(s) 37, 165
GluI GCNGC 5 cut(s) 104, 176, 200, 549, 1097
GsaI CCCAGC 1 cut(s) 668
HaeII RGCGCY 2 cut(s) 39, 167
HaeIII GGCC 2 cut(s) 42, 1389
HapII CCGG 3 cut(s) 237, 1243, 1444
HgaI GACGC 1 cut(s) 266
HhaI GCGC 2 cut(s) 38, 166
Hin1II CATG 8 cut(s) 433, 694, 733, 1006, 1185, 1199, 1238, 1257
Hin6I GCGC 2 cut(s) 36, 164
HinP1I GCGC 2 cut(s) 36, 164
HindIII AAGCTT 1 cut(s) 851
HinfI GANTC 5 cut(s) 139, 622, 682, 982, 1408
HpaII CCGG 3 cut(s) 237, 1243, 1444
HphI GGTGA 5 cut(s) 134, 266, 706, 1330, 1408
Hpy166II GTNNAC 2 cut(s) 1272, 1284
Hpy188I TCNGA 9 cut(s) 138, 231, 292, 313, 621, 642, 717, 918, 978
Hpy188III TCNNGA 8 cut(s) 473, 626, 782, 863, 905, 1211, 1243, 1377
Hpy8I GTNNAC 2 cut(s) 1272, 1284
HpyAV CCTTC 7 cut(s) 9, 439, 471, 647, 885, 949, 1374
HpyCH4III ACNGT 6 cut(s) 81, 153, 248, 254, 283, 952
HpyCH4IV ACGT 4 cut(s) 114, 594, 990, 1288
HpyCH4V TGCA 5 cut(s) 344, 1099, 1125, 1199, 1253
HpyF10VI GCNNNNNNNGC 3 cut(s) 172, 199, 670
HpyF3I CTNAG 4 cut(s) 135, 171, 931, 1150
HpySE526I ACGT 4 cut(s) 114, 594, 990, 1288
Hsp92II CATG 8 cut(s) 433, 694, 733, 1006, 1185, 1199, 1238, 1257
HspAI GCGC 2 cut(s) 36, 164
Kpn2I TCCGGA 1 cut(s) 1242
KpnI GGTACC 1 cut(s) 22
Kzo9I GATC 6 cut(s) 231, 784, 1373, 1426, 1470, 1495
LmnI GCTCC 3 cut(s) 47, 421, 1144
Lsp1109I GCAGC 2 cut(s) 211, 1083
LweI GCATC 2 cut(s) 187, 1194
MaeI CTAG 1 cut(s) 1400
MaeII ACGT 4 cut(s) 114, 594, 990, 1288
MaeIII GTNAC 6 cut(s) 242, 248, 254, 373, 694, 946
MalI GATC 6 cut(s) 233, 786, 1375, 1428, 1472, 1497
MboI GATC 6 cut(s) 231, 784, 1373, 1426, 1470, 1495
MboII GAAGA 8 cut(s) 234, 326, 413, 488, 691, 893, 1064, 1436
MfeI CAATTG 1 cut(s) 489
MflI RGATCY 2 cut(s) 231, 784
MhlI GDGCHC 1 cut(s) 1149
MlsI TGGCCA 1 cut(s) 1389
MluNI TGGCCA 1 cut(s) 1389
MlyI GAGTC 1 cut(s) 616
MmeI TCCRAC 3 cut(s) 644, 895, 1348
MnlI CCTC 6 cut(s) 5, 33, 218, 361, 835, 1494
Mox20I TGGCCA 1 cut(s) 1389
MroI TCCGGA 1 cut(s) 1242
MscI TGGCCA 1 cut(s) 1389
MseI TTAA 6 cut(s) 54, 497, 812, 963, 1104, 1434
Msp20I TGGCCA 1 cut(s) 1389
MspI CCGG 3 cut(s) 237, 1243, 1444
MspR9I CCNGG 3 cut(s) 27, 237, 771
MunI CAATTG 1 cut(s) 489
Mva1269I GAATGC 1 cut(s) 1348
MvaI CCWGG 2 cut(s) 27, 771
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 172, 199, 670
NciI CCSGG 1 cut(s) 237
NdeII GATC 6 cut(s) 231, 784, 1373, 1426, 1470, 1495
NlaIII CATG 8 cut(s) 433, 694, 733, 1006, 1185, 1199, 1238, 1257
NlaIV GGNNCC 3 cut(s) 20, 49, 709
NmuCI GTSAC 4 cut(s) 254, 373, 694, 946
NspI RCATGY 1 cut(s) 1257
NspV TTCGAA 1 cut(s) 220
PaeI GCATGC 1 cut(s) 1257
PaeR7I CTCGAG 1 cut(s) 624
PctI GAATGC 1 cut(s) 1348
PfeI GAWTC 4 cut(s) 139, 682, 982, 1408
PfoI TCCNGGA 1 cut(s) 25
PkrI GCNGC 5 cut(s) 105, 177, 201, 550, 1098
PleI GAGTC 1 cut(s) 616
PmaCI CACGTG 1 cut(s) 1289
PmlI CACGTG 1 cut(s) 1289
PpsI GAGTC 1 cut(s) 616
Ppu21I YACGTR 1 cut(s) 1289
PsiI TTATAA 1 cut(s) 611
Psp124BI GAGCTC 1 cut(s) 1149
Psp1406I AACGTT 1 cut(s) 594
Psp6I CCWGG 2 cut(s) 25, 769
PspCI CACGTG 1 cut(s) 1289
PspEI GGTNACC 1 cut(s) 694
PspFI CCCAGC 1 cut(s) 664
PspGI CCWGG 2 cut(s) 25, 769
PspN4I GGNNCC 3 cut(s) 20, 49, 709
PsuI RGATCY 2 cut(s) 231, 784
RsaI GTAC 2 cut(s) 20, 1273
RsaNI GTAC 2 cut(s) 19, 1272
SacI GAGCTC 1 cut(s) 1149
SaqAI TTAA 6 cut(s) 54, 497, 812, 963, 1104, 1434
SatI GCNGC 5 cut(s) 104, 176, 200, 549, 1097
Sau3AI GATC 6 cut(s) 231, 784, 1373, 1426, 1470, 1495
SchI GAGTC 1 cut(s) 616
ScrFI CCNGG 3 cut(s) 27, 237, 771
SduI GDGCHC 1 cut(s) 1149
SfaNI GCATC 2 cut(s) 187, 1194
Sfr274I CTCGAG 1 cut(s) 624
SfuI TTCGAA 1 cut(s) 220
SlaI CTCGAG 1 cut(s) 624
SmlI CTYRAG 3 cut(s) 624, 861, 1019
SmoI CTYRAG 3 cut(s) 624, 861, 1019
SphI GCATGC 1 cut(s) 1257
SsiI CCGC 7 cut(s) 101, 104, 123, 176, 240, 546, 549
SspMI CTAG 1 cut(s) 1400
SstI GAGCTC 1 cut(s) 1149
StyD4I CCNGG 3 cut(s) 25, 235, 769
TaaI ACNGT 6 cut(s) 81, 153, 248, 254, 283, 952
TaiI ACGT 4 cut(s) 117, 597, 993, 1291
TaqI TCGA 7 cut(s) 10, 220, 300, 355, 625, 1429, 1494
TatI WGTACW 1 cut(s) 1271
TauI GCSGC 3 cut(s) 106, 178, 551
TfiI GAWTC 4 cut(s) 139, 682, 982, 1408
Tru1I TTAA 6 cut(s) 54, 497, 812, 963, 1104, 1434
Tru9I TTAA 6 cut(s) 54, 497, 812, 963, 1104, 1434
TscAI CASTG 3 cut(s) 706, 885, 955
TseFI GTSAC 4 cut(s) 254, 373, 694, 946
TseI GCWGC 2 cut(s) 199, 1096
Tsp45I GTSAC 4 cut(s) 254, 373, 694, 946
TspDTI ATGAA 6 cut(s) 17, 740, 1023, 1058, 1170, 1437
TspGWI ACGGA 1 cut(s) 1481
TspRI CASTG 3 cut(s) 706, 885, 955
XapI RAATTY 3 cut(s) 777, 1065, 1479
XceI RCATGY 1 cut(s) 1257
XhoI CTCGAG 1 cut(s) 624
XspI CTAG 1 cut(s) 1400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.