Prupe.2G163800_v2.0.a1

Belongs to the DEAD box helicase family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
21381598 .. 21387439
5842 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G163800.1

Sequence Viewer

Length: 1500 bp
ATGAACAGTAACAGAGGGAGGTACCCTCCGGGGATCGGAGCTGGGAGAGGTGGTGGCATGAATGCAAACCCTGCATTTCAGTCTCGACCGCCGCATCAGCAACAGTATGTACAGAGGAACCTTTTGCCGAACCATCATCACCAGCAGTACTTTCAGCAACAGCAGCATCAACAGCAGCAGCAGCAACAACAACAGTGGCTCAGGAGAGGTCAGTTGGGTGGGAGTACCAGTGCTGATTCGGCCGTTGATGAGGTCGAGAAGACAGTGCAGTCGGAAGCTGTCGACCCGAGTTCGCATGATTGGAAGGCGAGGTTAAATATTCCAGCACCTGATACTCGTTTCAGAACGGAGGATGTAACTGCAACTAAAGGGAACGAGTTTGAGGACTATTTTCTGAAACGTGAGCTGCTGATGGGAATTTATGAGAAGGGATTCGAAAGACCATCCCCTATTCAGGAAGAAAGTATCCCAATTGCTTTAACTGGTAGTGATATTCTTGCTAGAGCTAAAAATGGAACGGGGAAAACAGCTGCATTTTGCATCCCTGCTTTGGAGAAAATTGATCAAGATAACAATGTAATACAAGTTGTTATTCTTGTTCCAACTCGCGAGTTGGCTCTTCAAACATCACAAGTCTGTAAGGAGCTAGGGAAGCATTTGCAAATTCAAGTTATGGTTACAACCGGAGGTACCAGCTTAAAGGATGATATCATGCGTTTATATCAACCAGTTCACTTACTTGTCGGAACTCCTGGAAGAATTTTAGATCTTGCAAAGAAAGGTGTTTGCATCTTGAAAGATTGTTCTATGCTTGTTATGGATGAGGCCGATAAGCTTTTGTCCCCGGAGTTTCAACCTTCAGTAGAGCAGCTGATCCGCTTCTTACCTTCACATCGACAAATTTTGATGTTTTCAGCTACATTTCCTGTTACTGTCAAGGACTTCAAGGATAGATATCTGCAAAAACCTTATGTTATCAACCTTATGGATGAGCTTACTCTAAAGGGTATTACACAATTTTACGCCTTTGTCGAGGAGAGACAGAAAGTCCACTGCCTAAACACTCTTTTCTCCAAGCTTCAAATAAATCAGTCAATCATATTCTGTAATTCTGTGAATCGGGTAGAGTTGTTGGCCAAGAAAATTACAGAACTTGGCTATTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGTAACAGAGTATTTCATGACTTCCGTAATGGTGCATGCAGAAATCTTGTTTGTACAGATCTATTTACAAGAGGAATAGATATTCAAGCAGTCAATGTTGTCATTAACTTTGATTTTCCAAAGAACTCAGAGACATATCTTCACAGGGTTGGTCGATCTGGAAGGTTTGGACACCTTGGTTTAGCTGTGAATTTGATCACCTATGAAGACCGCTTCAACTTGTATAGAATTGAGCAAGAACTTGGGACCGAGATAAAGCAAATTCCTCCCCATATCGATCAGGCAATTTATTGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

500

Amino Acids

56.97

Weight (kDa)

8.55

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 268
Acc65I GGTACC 2 cut(s) 21, 689
AccB1I GGYRCC 2 cut(s) 21, 689
AccI GTMKAC 1 cut(s) 282
AccII CGCG 1 cut(s) 609
AciI CCGC 4 cut(s) 89, 92, 877, 1411
AclWI GGATC 2 cut(s) 41, 868
AcoI YGGCCR 2 cut(s) 240, 1134
AcsI RAATTY 6 cut(s) 417, 663, 759, 900, 1390, 1461
AcuI CTGAAG 1 cut(s) 843
AfaI GTAC 6 cut(s) 23, 111, 149, 226, 691, 1255
AfiI CCNNNNNNNGG 3 cut(s) 35, 454, 550
AgsI TTSAA 8 cut(s) 623, 668, 796, 854, 946, 1082, 1286, 1417
AhdI GACNNNNNGTC 1 cut(s) 1046
AjnI CCWGG 1 cut(s) 751
Alw26I GTCTC 3 cut(s) 87, 1033, 1325
AlwI GGATC 2 cut(s) 41, 868
AlwNI CAGNNNCTG 1 cut(s) 329
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 3 cut(s) 240, 825, 1134
ApeKI GCWGC 8 cut(s) 163, 175, 178, 181, 406, 530, 868, 1189
ApoI RAATTY 6 cut(s) 417, 663, 759, 900, 1390, 1461
Asp700I GAANNNNTTC 1 cut(s) 431
Asp718I GGTACC 2 cut(s) 21, 689
AspS9I GGNCC 1 cut(s) 1446
AsuC2I CCSGG 2 cut(s) 30, 845
AsuHPI GGTGA 2 cut(s) 131, 1390
AsuII TTCGAA 1 cut(s) 435
AvaI CYCGRG 1 cut(s) 286
AvaII GGWCC 1 cut(s) 1446
BalI TGGCCA 1 cut(s) 1136
BanI GGYRCC 2 cut(s) 21, 689
BbsI GAAGAC 2 cut(s) 266, 1413
BbvI GCAGC 8 cut(s) 175, 187, 190, 193, 393, 517, 880, 1176
BccI CCATC 4 cut(s) 141, 406, 451, 1206
BceAI ACGGC 1 cut(s) 227
BcgI CGANNNNNNTGC 2 cut(s) 1181, 1215
BciT130I CCWGG 1 cut(s) 753
BciVI GTATCC 1 cut(s) 476
BclI TGATCA 2 cut(s) 562, 1395
BcnI CCSGG 2 cut(s) 30, 845
BcoDI GTCTC 3 cut(s) 87, 1033, 1325
BfaI CTAG 2 cut(s) 501, 647
BfuI GTATCC 1 cut(s) 476
BglII AGATCT 2 cut(s) 766, 1258
BisI GCNGC 9 cut(s) 92, 164, 176, 179, 182, 407, 531, 869, 1190
BlsI GCNGC 9 cut(s) 93, 165, 177, 180, 183, 408, 532, 870, 1191
BmcAI AGTACT 1 cut(s) 149
Bme1390I CCNGG 3 cut(s) 30, 753, 845
Bme18I GGWCC 1 cut(s) 1446
BmeRI GACNNNNNGTC 1 cut(s) 1046
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 1446
BmiI GGNNCC 4 cut(s) 23, 119, 691, 1447
BmrFI CCNGG 3 cut(s) 30, 753, 845
BmsI GCATC 5 cut(s) 103, 175, 549, 798, 1176
BpiI GAAGAC 2 cut(s) 266, 1413
BplI GAGNNNNNCTC 2 cut(s) 10, 42
Bpu10I CCTNAGC 1 cut(s) 200
Bpu14I TTCGAA 1 cut(s) 435
BpuMI CCSGG 2 cut(s) 30, 845
Bsa29I ATCGAT 1 cut(s) 1476
BsaBI GATNNNNATC 1 cut(s) 954
BsaJI CCNNGG 3 cut(s) 29, 843, 1375
BsaWI WCCGGW 1 cut(s) 683
BsaXI ACNNNNNCTCC 4 cut(s) 37, 67, 214, 244
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 454, 550
Bse118I RCCGGY 1 cut(s) 1494
Bse1I ACTGG 3 cut(s) 228, 487, 728
Bse8I GATNNNNATC 1 cut(s) 954
BseBI CCWGG 1 cut(s) 753
BseCI ATCGAT 1 cut(s) 1476
BseDI CCNNGG 3 cut(s) 29, 843, 1375
BseGI GGATG 6 cut(s) 358, 443, 540, 709, 826, 994
BseJI GATNNNNATC 1 cut(s) 954
BseLI CCNNNNNNNGG 3 cut(s) 35, 454, 550
BseMII CTCAG 2 cut(s) 214, 1341
BseNI ACTGG 3 cut(s) 228, 487, 728
BseRI GAGGAG 1 cut(s) 1049
BseX3I CGGCCG 1 cut(s) 240
BseXI GCAGC 8 cut(s) 175, 187, 190, 193, 393, 517, 880, 1176
BseYI CCCAGC 1 cut(s) 41
BsgI GTGCAG 1 cut(s) 287
Bsh1236I CGCG 1 cut(s) 609
Bsh1285I CGRYCG 2 cut(s) 89, 243
BshFI GGCC 3 cut(s) 242, 827, 1136
BshNI GGYRCC 2 cut(s) 21, 689
BshVI ATCGAT 1 cut(s) 1476
BsiEI CGRYCG 2 cut(s) 89, 243
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 4 cut(s) 29, 684, 845, 1495
BslFI GGGAC 2 cut(s) 826, 1459
BslI CCNNNNNNNGG 3 cut(s) 35, 454, 550
BsmAI GTCTC 3 cut(s) 87, 1033, 1325
BsmFI GGGAC 2 cut(s) 826, 1459
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 3 cut(s) 242, 827, 1136
BsoBI CYCGRG 1 cut(s) 286
Bsp119I TTCGAA 1 cut(s) 435
Bsp1407I TGTACA 2 cut(s) 109, 1253
Bsp143I GATC 8 cut(s) 33, 562, 766, 873, 1258, 1355, 1395, 1477
Bsp68I TCGCGA 1 cut(s) 609
BspACI CCGC 4 cut(s) 89, 92, 877, 1411
BspANI GGCC 3 cut(s) 242, 827, 1136
BspCNI CTCAG 2 cut(s) 213, 1340
BspDI ATCGAT 1 cut(s) 1476
BspFNI CGCG 1 cut(s) 609
BspHI TCATGA 1 cut(s) 1216
BspLI GGNNCC 4 cut(s) 23, 119, 691, 1447
BspPI GGATC 2 cut(s) 41, 868
BspQI GCTCTTC 1 cut(s) 624
BspT104I TTCGAA 1 cut(s) 435
BspT107I GGYRCC 2 cut(s) 21, 689
BsrFI RCCGGY 1 cut(s) 1494
BsrGI TGTACA 2 cut(s) 109, 1253
BsrI ACTGG 3 cut(s) 228, 487, 728
BssAI RCCGGY 1 cut(s) 1494
BssECI CCNNGG 3 cut(s) 29, 843, 1375
BssMI GATC 8 cut(s) 33, 562, 766, 873, 1258, 1355, 1395, 1477
BssT1I CCWWGG 1 cut(s) 1375
Bst2UI CCWGG 1 cut(s) 753
Bst4CI ACNGT 5 cut(s) 8, 105, 195, 265, 934
Bst6I CTCTTC 1 cut(s) 624
BstAPI GCANNNNNTGC 1 cut(s) 71
BstAUI TGTACA 2 cut(s) 109, 1253
BstBI TTCGAA 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 1237
BstDEI CTNAG 2 cut(s) 200, 1327
BstF5I GGATG 6 cut(s) 358, 443, 540, 709, 826, 994
BstFNI CGCG 1 cut(s) 609
BstKTI GATC 8 cut(s) 36, 565, 769, 876, 1261, 1358, 1398, 1480
BstMAI GTCTC 3 cut(s) 87, 1033, 1325
BstMBI GATC 8 cut(s) 33, 562, 766, 873, 1258, 1355, 1395, 1477
BstMCI CGRYCG 2 cut(s) 89, 243
BstMWI GCNNNNNNNGC 7 cut(s) 71, 97, 163, 172, 181, 239, 652
BstNI CCWGG 1 cut(s) 753
BstNSI RCATGY 1 cut(s) 1239
BstSCI CCNGG 3 cut(s) 28, 751, 843
BstUI CGCG 1 cut(s) 609
BstV1I GCAGC 8 cut(s) 175, 187, 190, 193, 393, 517, 880, 1176
BstV2I GAAGAC 2 cut(s) 266, 1413
BstX2I RGATCY 2 cut(s) 766, 1258
BstYI RGATCY 2 cut(s) 766, 1258
BstZI CGGCCG 1 cut(s) 240
Bsu15I ATCGAT 1 cut(s) 1476
BsuI GTATCC 1 cut(s) 476
BsuRI GGCC 3 cut(s) 242, 827, 1136
BsuTUI ATCGAT 1 cut(s) 1476
BtsCI GGATG 6 cut(s) 358, 443, 540, 709, 826, 994
BtsI GCAGTG 1 cut(s) 1051
BtsIMutI CAGTG 4 cut(s) 200, 235, 270, 1051
BtuMI TCGCGA 1 cut(s) 609
Cac8I GCNNGC 1 cut(s) 1237
CaiI CAGNNNCTG 1 cut(s) 329
CciI TCATGA 1 cut(s) 1216
Cfr10I RCCGGY 1 cut(s) 1494
Cfr13I GGNCC 1 cut(s) 1446
ClaI ATCGAT 1 cut(s) 1476
Csp6I GTAC 6 cut(s) 22, 110, 148, 225, 690, 1254
CspCI CAANNNNNGTGG 2 cut(s) 176, 211
CviAII CATG 6 cut(s) 58, 296, 712, 1178, 1217, 1236
CviQI GTAC 6 cut(s) 22, 110, 148, 225, 690, 1254
DdeI CTNAG 2 cut(s) 200, 1327
DpnI GATC 8 cut(s) 35, 564, 768, 875, 1260, 1357, 1397, 1479
DpnII GATC 8 cut(s) 33, 562, 766, 873, 1258, 1355, 1395, 1477
DrdI GACNNNNNNGTC 1 cut(s) 268
DriI GACNNNNNGTC 1 cut(s) 1046
DseDI GACNNNNNNGTC 1 cut(s) 268
EaeI YGGCCR 2 cut(s) 240, 1134
EagI CGGCCG 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 624
Eam1105I GACNNNNNGTC 1 cut(s) 1046
EarI CTCTTC 1 cut(s) 624
EclXI CGGCCG 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 1375
Eco32I GATATC 2 cut(s) 709, 956
Eco47I GGWCC 1 cut(s) 1446
Eco52I CGGCCG 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 843
Eco88I CYCGRG 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 751
EcoRV GATATC 2 cut(s) 709, 956
EcoT14I CCWWGG 1 cut(s) 1375
ErhI CCWWGG 1 cut(s) 1375
FaeI CATG 6 cut(s) 61, 299, 715, 1181, 1220, 1239
FaqI GGGAC 2 cut(s) 826, 1459
FatI CATG 6 cut(s) 57, 295, 711, 1177, 1216, 1235
FbaI TGATCA 2 cut(s) 562, 1395
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 9 cut(s) 92, 164, 176, 179, 182, 407, 531, 869, 1190
FokI GGATG 6 cut(s) 365, 430, 527, 716, 833, 1001
Fsp4HI GCNGC 9 cut(s) 92, 164, 176, 179, 182, 407, 531, 869, 1190
FspBI CTAG 2 cut(s) 501, 647
GluI GCNGC 9 cut(s) 92, 164, 176, 179, 182, 407, 531, 869, 1190
GsaI CCCAGC 1 cut(s) 45
HaeIII GGCC 3 cut(s) 242, 827, 1136
HapII CCGG 4 cut(s) 29, 684, 845, 1495
Hin1II CATG 6 cut(s) 61, 299, 715, 1181, 1220, 1239
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 2 cut(s) 833, 1076
HinfI GANTC 3 cut(s) 236, 432, 1117
HpaII CCGG 4 cut(s) 29, 684, 845, 1495
HphI GGTGA 2 cut(s) 131, 1390
Hpy166II GTNNAC 3 cut(s) 283, 733, 1051
Hpy188I TCNGA 6 cut(s) 38, 274, 344, 396, 746, 1330
Hpy188III TCNNGA 9 cut(s) 84, 202, 256, 455, 566, 608, 793, 1217, 1359
Hpy8I GTNNAC 3 cut(s) 283, 733, 1051
HpyAV CCTTC 5 cut(s) 298, 421, 867, 897, 1356
HpyCH4III ACNGT 5 cut(s) 8, 105, 195, 265, 934
HpyCH4IV ACGT 1 cut(s) 400
HpyF10VI GCNNNNNNNGC 7 cut(s) 71, 97, 163, 172, 181, 239, 652
HpyF3I CTNAG 2 cut(s) 200, 1327
HpySE526I ACGT 1 cut(s) 400
Hsp92II CATG 6 cut(s) 61, 299, 715, 1181, 1220, 1239
KpnI GGTACC 2 cut(s) 25, 693
Ksp22I TGATCA 2 cut(s) 562, 1395
Kzo9I GATC 8 cut(s) 33, 562, 766, 873, 1258, 1355, 1395, 1477
LguI GCTCTTC 1 cut(s) 624
LmnI GCTCC 2 cut(s) 38, 643
Lsp1109I GCAGC 8 cut(s) 175, 187, 190, 193, 393, 517, 880, 1176
LweI GCATC 5 cut(s) 103, 175, 549, 798, 1176
MaeI CTAG 2 cut(s) 501, 647
MaeII ACGT 1 cut(s) 400
MaeIII GTNAC 5 cut(s) 8, 355, 676, 928, 1202
MalI GATC 8 cut(s) 35, 564, 768, 875, 1260, 1357, 1397, 1479
MboI GATC 8 cut(s) 33, 562, 766, 873, 1258, 1355, 1395, 1477
MboII GAAGA 6 cut(s) 271, 470, 611, 768, 1331, 1418
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 2 cut(s) 766, 1258
MlsI TGGCCA 1 cut(s) 1136
MluNI TGGCCA 1 cut(s) 1136
MmeI TCCRAC 3 cut(s) 252, 626, 724
Mox20I TGGCCA 1 cut(s) 1136
MroXI GAANNNNTTC 1 cut(s) 431
MscI TGGCCA 1 cut(s) 1136
MseI TTAA 4 cut(s) 314, 479, 698, 1305
Msp20I TGGCCA 1 cut(s) 1136
MspA1I CMGCKG 2 cut(s) 530, 871
MspI CCGG 4 cut(s) 29, 684, 845, 1495
MspR9I CCNGG 3 cut(s) 30, 753, 845
MunI CAATTG 1 cut(s) 471
Mva1269I GAATGC 1 cut(s) 67
MvaI CCWGG 1 cut(s) 753
MvnI CGCG 1 cut(s) 609
MwoI GCNNNNNNNGC 7 cut(s) 71, 97, 163, 172, 181, 239, 652
NciI CCSGG 2 cut(s) 30, 845
NdeII GATC 8 cut(s) 33, 562, 766, 873, 1258, 1355, 1395, 1477
NlaIII CATG 6 cut(s) 61, 299, 715, 1181, 1220, 1239
NlaIV GGNNCC 4 cut(s) 23, 119, 691, 1447
NruI TCGCGA 1 cut(s) 609
NspI RCATGY 1 cut(s) 1239
NspV TTCGAA 1 cut(s) 435
PaeI GCATGC 1 cut(s) 1239
PagI TCATGA 1 cut(s) 1216
PciSI GCTCTTC 1 cut(s) 624
PcsI WCGNNNNNNNCGW 1 cut(s) 1029
PctI GAATGC 1 cut(s) 67
PdmI GAANNNNTTC 1 cut(s) 431
PfeI GAWTC 3 cut(s) 236, 432, 1117
PfoI TCCNGGA 1 cut(s) 751
PkrI GCNGC 9 cut(s) 93, 165, 177, 180, 183, 408, 532, 870, 1191
Psp6I CCWGG 1 cut(s) 751
PspFI CCCAGC 1 cut(s) 41
PspGI CCWGG 1 cut(s) 751
PspN4I GGNNCC 4 cut(s) 23, 119, 691, 1447
PspPI GGNCC 1 cut(s) 1446
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 2 cut(s) 766, 1258
PvuII CAGCTG 2 cut(s) 530, 871
RruI TCGCGA 1 cut(s) 609
RsaI GTAC 6 cut(s) 23, 111, 149, 226, 691, 1255
RsaNI GTAC 6 cut(s) 22, 110, 148, 225, 690, 1254
SalI GTCGAC 1 cut(s) 281
SapI GCTCTTC 1 cut(s) 624
SaqAI TTAA 4 cut(s) 314, 479, 698, 1305
SatI GCNGC 9 cut(s) 92, 164, 176, 179, 182, 407, 531, 869, 1190
Sau3AI GATC 8 cut(s) 33, 562, 766, 873, 1258, 1355, 1395, 1477
Sau96I GGNCC 1 cut(s) 1446
ScaI AGTACT 1 cut(s) 149
ScrFI CCNGG 3 cut(s) 30, 753, 845
SfaNI GCATC 5 cut(s) 103, 175, 549, 798, 1176
SfuI TTCGAA 1 cut(s) 435
SinI GGWCC 1 cut(s) 1446
SphI GCATGC 1 cut(s) 1239
SsiI CCGC 4 cut(s) 89, 92, 877, 1411
SspI AATATT 1 cut(s) 319
SspMI CTAG 2 cut(s) 501, 647
StyD4I CCNGG 3 cut(s) 28, 751, 843
StyI CCWWGG 1 cut(s) 1375
TaaI ACNGT 5 cut(s) 8, 105, 195, 265, 934
TaiI ACGT 1 cut(s) 403
TaqI TCGA 8 cut(s) 85, 255, 282, 435, 895, 1032, 1354, 1476
TaqII GACCGA 1 cut(s) 1463
TatI WGTACW 3 cut(s) 109, 147, 1253
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 3 cut(s) 236, 432, 1117
Tru1I TTAA 4 cut(s) 314, 479, 698, 1305
Tru9I TTAA 4 cut(s) 314, 479, 698, 1305
TscAI CASTG 4 cut(s) 200, 235, 270, 1058
TseI GCWGC 8 cut(s) 163, 175, 178, 181, 406, 530, 868, 1189
TspDTI ATGAA 4 cut(s) 17, 74, 1205, 1419
TspGWI ACGGA 2 cut(s) 362, 1214
TspRI CASTG 4 cut(s) 200, 235, 270, 1058
VpaK11BI GGWCC 1 cut(s) 1446
XapI RAATTY 6 cut(s) 417, 663, 759, 900, 1390, 1461
XceI RCATGY 1 cut(s) 1239
XmiI GTMKAC 1 cut(s) 282
XmnI GAANNNNTTC 1 cut(s) 431
XspI CTAG 2 cut(s) 501, 647
ZrmI AGTACT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.