Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006588

Physical Location & Seq

Genomic Coordinates Reverse (-)

15868259 .. 15874943

Gene Structure 6685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1054200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGAACAGTAATAGAGGGAGGTACCCGCCGGGGATCGGAGCTGGGAGGGGCGGCGGCATGAATGCGAACCCTGCATTCCAGTCCCGTCCGCCGCATCAGCAGCAGTATGTACAGAGGAACCTTTTGCCGAACCATCATCACCAGCAGCAGTACTTTCAGCAGCAGCAGCAGCAGCAGCAACACCAACAGCATCAACAGCAGCAACTACAACAGCAACAGCAGTGGCTCAGGAGAGGCCAGTTGGGTGGGAGTACGAGTGCTGATTCAGCCGTTGATGAGGTGGAAAAGACCGTGCAGTCGGAAGCTGTCGACCCGAGTTCGCAAGATTGGAAGGCCAGGTTAAAGATTCCACCAGCTGATACACGTTTCAGAACAGAGGATGTAACGGCAACAAAAGGAAATGAGTTTGAGGACTATTTTCTGAAACGTGAGCTGCTGATGGGAATATATGAGAAGGGATTTGAAAGACCATCTCCTATTCAGGAAGAAAGTATTCCAATTGCTTTAACTGGTAGTGATATTCTTGCTAGAGCTAAAAATGGGACGGGAAAGACAGCTGCATTTTGCATCCCTGCATTGGAAAAAATTGATCAAGATAACAATGTGATACAAGTTGTTATTCTTGTTCCAACTCGTGAGTTGGCTCTTCAAACATCACAAGTCTGTAAGGAGCTAGGGAAGCATTTGCAAATTCAAGTTATGGTTACAACCGGAGGCACCAGCTTAAAGGATGATATCATGCGTTTATATCAACCAGTTCACTTACTTGTCGGAACTCCTGGAAGAATTTTAGATCTTGCAAAGAAAGGTGTTTGCATCTTGAAAGATTGTTCTATGCTTGTTATGGATGAGGCTGATAAACTTATGTCCCCGGAATTTCAACCTTCAGTAGAGCAGTTGATCCGCTTCTTACCTTCACATCGACAGATTTTGATGTTTTCAGCTACATTTCCTGTTACTGTCAAGGACTTTAAGGATAGATATCTGCAAAAACCATATGTTATCAATCTTATGGATGAGCTTACTCTAAAGGGTATTACACAATTTTACGCCTTTGTGGAGGAGAGACAGAAAGTCCACTGCCTAAACACCCTTTTCTCTAAGCTTCAAATAAACCAGTCAATCATATTCTGTAACTCTGTGAACCGGGTCGAATTGTTGGCCAAGAAAATTACAGAACTTGGCTATTCTTGTTTCTATATCCATGCAAAGATGCTGCAAGACCATCGTAACAGAGTATTTCATGACTTCCGTAATGGTGCATGCAGAAATCTTGTTTGTACCGATCTCTTTACAAGAGGAATAGATATTCAAGCAGTTAATGTTGTCATTAACTTTGATTTTCCGAAGAACTCAGAGACATATCTTCACAGGGTTGGTCGATCCGGAAGGTTTGGACACCTTGGTTTAGCTGTGAATTTGATCACCTATGAGGACCGTTTCAACTTGTATAGAATTGAGCAAGAACTTGGCACTGAGATAAAGCAAATTCCTCCCCATATCGATCAGGCAATTTATTGCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

509

Amino Acids

58.14

Weight (kDa)

8.67

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	158 - 323	3.2e-47	DEAD/DEAH box helicase
Helicase_C	PF00271	358 - 466	6.2e-32	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45810 AT3G61240 AT3G61240 AT4G00660 AT4G00660
fragaria_vesca	FvH4_7g13810 FvH4_7g13810 FvH4_7g13810 FvH4_7g13810 FvH4_7g13810 FvH4_7g13810
malus_domestica	MD01G1054200.v1.1 MD07G1141100.v1.1
prunus_persica	Prupe.2G163800_v2.0.a1
pyrus_communis	pycom01g07950 pycom07g13890
rosa_chinensis	RchiOBHm_Chr1g0353991
rosa_laevigata	RLG00000028238
rosa_multiflora	Rmu_sc0001763.1_g000011
rosa_roxburghii	Rroxscaffold_4G00301390
rosa_rugosa	Rorug01G0239700
rosa_samantha	Rh1AG251200 Rh1BG222800 Rh1CG235400 Rh1DG249700
rosa_wichuraiana	Rw1G021910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	295
Acc65I	GGTACC	1 cut(s)	21
AccB1I	GGYRCC	2 cut(s)	21, 716
AccI	GTMKAC	1 cut(s)	309
AccIII	TCCGGA	1 cut(s)	1385
AciI	CCGC	6 cut(s)	26, 51, 54, 89, 92, 904
AclWI	GGATC	3 cut(s)	41, 895, 1377
AcoI	YGGCCR	1 cut(s)	1161
AcsI	RAATTY	5 cut(s)	690, 786, 875, 1417, 1488
AcuI	CTGAAG	1 cut(s)	870
AfaI	GTAC	5 cut(s)	23, 111, 152, 253, 1282
AfiI	CCNNNNNNNGG	2 cut(s)	35, 577
AflIII	ACRYGT	1 cut(s)	362
AgsI	TTSAA	8 cut(s)	464, 650, 695, 823, 881, 1109, 1313, 1444
AhdI	GACNNNNNGTC	1 cut(s)	1073
AjnI	CCWGG	2 cut(s)	335, 778
Alw26I	GTCTC	2 cut(s)	1060, 1352
AlwI	GGATC	3 cut(s)	41, 895, 1377
Ama87I	CYCGRG	1 cut(s)	313
Aor13HI	TCCGGA	1 cut(s)	1385
AoxI	GGCC	3 cut(s)	235, 333, 1161
ApoI	RAATTY	5 cut(s)	690, 786, 875, 1417, 1488
Asp700I	GAANNNNTTC	1 cut(s)	492
Asp718I	GGTACC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	1435
AsuC2I	CCSGG	3 cut(s)	30, 872, 1148
AsuHPI	GGTGA	2 cut(s)	131, 1417
AvaI	CYCGRG	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	1435
BalI	TGGCCA	1 cut(s)	1163
BanI	GGYRCC	2 cut(s)	21, 716
BauI	CACGAG	1 cut(s)	633
BccI	CCATC	4 cut(s)	141, 433, 478, 1233
BceAI	ACGGC	2 cut(s)	254, 402
BcgI	CGANNNNNNTGC	2 cut(s)	1208, 1242
BciT130I	CCWGG	2 cut(s)	337, 780
BclI	TGATCA	2 cut(s)	589, 1422
BcnI	CCSGG	3 cut(s)	30, 872, 1148
BcoDI	GTCTC	2 cut(s)	1060, 1352
BfaI	CTAG	2 cut(s)	528, 674
BglII	AGATCT	1 cut(s)	793
BmcAI	AGTACT	1 cut(s)	152
Bme1390I	CCNGG	5 cut(s)	30, 337, 780, 872, 1148
Bme18I	GGWCC	1 cut(s)	1435
BmeRI	GACNNNNNGTC	1 cut(s)	1073
BmeT110I	CYCGRG	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	1435
BmiI	GGNNCC	3 cut(s)	23, 119, 718
BmrFI	CCNGG	5 cut(s)	30, 337, 780, 872, 1148
BmsI	GCATC	5 cut(s)	103, 199, 576, 825, 1203
Bpu10I	CCTNAGC	1 cut(s)	227
BpuMI	CCSGG	3 cut(s)	30, 872, 1148
Bsa29I	ATCGAT	1 cut(s)	1503
BsaBI	GATNNNNATC	1 cut(s)	981
BsaJI	CCNNGG	3 cut(s)	29, 870, 1402
BsaWI	WCCGGW	2 cut(s)	710, 1385
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 577
Bse118I	RCCGGY	1 cut(s)	1521
Bse1I	ACTGG	5 cut(s)	79, 238, 514, 755, 1117
Bse8I	GATNNNNATC	1 cut(s)	981
BseAI	TCCGGA	1 cut(s)	1385
BseBI	CCWGG	2 cut(s)	337, 780
BseCI	ATCGAT	1 cut(s)	1503
BseDI	CCNNGG	3 cut(s)	29, 870, 1402
BseGI	GGATG	5 cut(s)	385, 567, 736, 853, 1021
BseJI	GATNNNNATC	1 cut(s)	981
BseLI	CCNNNNNNNGG	2 cut(s)	35, 577
BseMII	CTCAG	3 cut(s)	241, 1368, 1467
BseNI	ACTGG	5 cut(s)	79, 238, 514, 755, 1117
BseRI	GAGGAG	1 cut(s)	1076
BseYI	CCCAGC	1 cut(s)	41
BsgI	GTGCAG	1 cut(s)	314
BshFI	GGCC	3 cut(s)	237, 335, 1163
BshNI	GGYRCC	2 cut(s)	21, 716
BshVI	ATCGAT	1 cut(s)	1503
BsiHKCI	CYCGRG	1 cut(s)	313
BsiSI	CCGG	6 cut(s)	29, 711, 872, 1147, 1386, 1522
BslFI	GGGAC	3 cut(s)	67, 556, 853
BslI	CCNNNNNNNGG	2 cut(s)	35, 577
BsmAI	GTCTC	2 cut(s)	1060, 1352
BsmFI	GGGAC	3 cut(s)	67, 556, 853
BsmI	GAATGC	2 cut(s)	67, 74
BsnI	GGCC	3 cut(s)	237, 335, 1163
BsoBI	CYCGRG	1 cut(s)	313
Bsp13I	TCCGGA	1 cut(s)	1385
Bsp1407I	TGTACA	1 cut(s)	109
Bsp143I	GATC	8 cut(s)	33, 589, 793, 900, 1285, 1382, 1422, 1504
BspACI	CCGC	6 cut(s)	26, 51, 54, 89, 92, 904
BspANI	GGCC	3 cut(s)	237, 335, 1163
BspCNI	CTCAG	3 cut(s)	240, 1367, 1468
BspDI	ATCGAT	1 cut(s)	1503
BspEI	TCCGGA	1 cut(s)	1385
BspHI	TCATGA	1 cut(s)	1243
BspLI	GGNNCC	3 cut(s)	23, 119, 718
BspPI	GGATC	3 cut(s)	41, 895, 1377
BspQI	GCTCTTC	1 cut(s)	651
BspT107I	GGYRCC	2 cut(s)	21, 716
BsrFI	RCCGGY	1 cut(s)	1521
BsrGI	TGTACA	1 cut(s)	109
BsrI	ACTGG	5 cut(s)	79, 238, 514, 755, 1117
BssAI	RCCGGY	1 cut(s)	1521
BssECI	CCNNGG	3 cut(s)	29, 870, 1402
BssMI	GATC	8 cut(s)	33, 589, 793, 900, 1285, 1382, 1422, 1504
BssSI	CACGAG	1 cut(s)	633
BssT1I	CCWWGG	1 cut(s)	1402
Bst2BI	CACGAG	1 cut(s)	633
Bst2UI	CCWGG	2 cut(s)	337, 780
Bst4CI	ACNGT	4 cut(s)	8, 292, 961, 1439
Bst6I	CTCTTC	1 cut(s)	651
BstAUI	TGTACA	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	1264
BstDEI	CTNAG	4 cut(s)	227, 1101, 1354, 1476
BstF5I	GGATG	5 cut(s)	385, 567, 736, 853, 1021
BstKTI	GATC	8 cut(s)	36, 592, 796, 903, 1288, 1385, 1425, 1507
BstMAI	GTCTC	2 cut(s)	1060, 1352
BstMBI	GATC	8 cut(s)	33, 589, 793, 900, 1285, 1382, 1422, 1504
BstNI	CCWGG	2 cut(s)	337, 780
BstNSI	RCATGY	1 cut(s)	1266
BstSCI	CCNGG	5 cut(s)	28, 335, 778, 870, 1146
BstX2I	RGATCY	1 cut(s)	793
BstXI	CCANNNNNNTGG	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	793
Bsu15I	ATCGAT	1 cut(s)	1503
BsuRI	GGCC	3 cut(s)	237, 335, 1163
BsuTUI	ATCGAT	1 cut(s)	1503
BtsCI	GGATG	5 cut(s)	385, 567, 736, 853, 1021
BtsI	GCAGTG	2 cut(s)	227, 1078
BtsIMutI	CAGTG	3 cut(s)	227, 1078, 1473
Cac8I	GCNNGC	1 cut(s)	1264
CciI	TCATGA	1 cut(s)	1243
Cfr10I	RCCGGY	1 cut(s)	1521
Cfr13I	GGNCC	1 cut(s)	1435
ClaI	ATCGAT	1 cut(s)	1503
Csp6I	GTAC	5 cut(s)	22, 110, 151, 252, 1281
CspCI	CAANNNNNGTGG	2 cut(s)	203, 238
CviAII	CATG	5 cut(s)	58, 739, 1205, 1244, 1263
CviQI	GTAC	5 cut(s)	22, 110, 151, 252, 1281
DdeI	CTNAG	4 cut(s)	227, 1101, 1354, 1476
DpnI	GATC	8 cut(s)	35, 591, 795, 902, 1287, 1384, 1424, 1506
DpnII	GATC	8 cut(s)	33, 589, 793, 900, 1285, 1382, 1422, 1504
DrdI	GACNNNNNNGTC	1 cut(s)	295
DriI	GACNNNNNGTC	1 cut(s)	1073
DseDI	GACNNNNNNGTC	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	1161
Eam1104I	CTCTTC	1 cut(s)	651
Eam1105I	GACNNNNNGTC	1 cut(s)	1073
EarI	CTCTTC	1 cut(s)	651
EciI	GGCGGA	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	1402
Eco32I	GATATC	2 cut(s)	736, 983
Eco47I	GGWCC	1 cut(s)	1435
Eco57I	CTGAAG	1 cut(s)	870
Eco88I	CYCGRG	1 cut(s)	313
EcoRII	CCWGG	2 cut(s)	335, 778
EcoRV	GATATC	2 cut(s)	736, 983
EcoT14I	CCWWGG	1 cut(s)	1402
ErhI	CCWWGG	1 cut(s)	1402
FaeI	CATG	5 cut(s)	61, 742, 1208, 1247, 1266
FaqI	GGGAC	3 cut(s)	67, 556, 853
FatI	CATG	5 cut(s)	57, 738, 1204, 1243, 1262
FauI	CCCGC	1 cut(s)	33
FauNDI	CATATG	1 cut(s)	997
FbaI	TGATCA	2 cut(s)	589, 1422
FblI	GTMKAC	1 cut(s)	309
FokI	GGATG	5 cut(s)	392, 554, 743, 860, 1028
FspBI	CTAG	2 cut(s)	528, 674
GsaI	CCCAGC	1 cut(s)	45
HaeIII	GGCC	3 cut(s)	237, 335, 1163
HapII	CCGG	6 cut(s)	29, 711, 872, 1147, 1386, 1522
Hin1II	CATG	5 cut(s)	61, 742, 1208, 1247, 1266
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	1 cut(s)	1103
HinfI	GANTC	2 cut(s)	263, 346
HpaII	CCGG	6 cut(s)	29, 711, 872, 1147, 1386, 1522
HphI	GGTGA	2 cut(s)	131, 1417
Hpy166II	GTNNAC	4 cut(s)	310, 760, 1078, 1144
Hpy188I	TCNGA	7 cut(s)	38, 301, 371, 423, 773, 1347, 1357
Hpy188III	TCNNGA	7 cut(s)	229, 482, 593, 635, 820, 1244, 1386
Hpy8I	GTNNAC	4 cut(s)	310, 760, 1078, 1144
HpyAV	CCTTC	5 cut(s)	325, 448, 894, 924, 1383
HpyCH4III	ACNGT	4 cut(s)	8, 292, 961, 1439
HpyCH4IV	ACGT	2 cut(s)	364, 427
HpyF3I	CTNAG	4 cut(s)	227, 1101, 1354, 1476
HpySE526I	ACGT	2 cut(s)	364, 427
Hsp92II	CATG	5 cut(s)	61, 742, 1208, 1247, 1266
Kpn2I	TCCGGA	1 cut(s)	1385
KpnI	GGTACC	1 cut(s)	25
Ksp22I	TGATCA	2 cut(s)	589, 1422
Kzo9I	GATC	8 cut(s)	33, 589, 793, 900, 1285, 1382, 1422, 1504
LguI	GCTCTTC	1 cut(s)	651
LmnI	GCTCC	2 cut(s)	38, 670
LweI	GCATC	5 cut(s)	103, 199, 576, 825, 1203
MaeI	CTAG	2 cut(s)	528, 674
MaeII	ACGT	2 cut(s)	364, 427
MaeIII	GTNAC	5 cut(s)	382, 703, 955, 1133, 1229
MalI	GATC	8 cut(s)	35, 591, 795, 902, 1287, 1384, 1424, 1506
MboI	GATC	8 cut(s)	33, 589, 793, 900, 1285, 1382, 1422, 1504
MboII	GAAGA	5 cut(s)	497, 638, 795, 1358, 1360
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	1 cut(s)	793
MlsI	TGGCCA	1 cut(s)	1163
MluNI	TGGCCA	1 cut(s)	1163
MmeI	TCCRAC	3 cut(s)	279, 653, 751
Mox20I	TGGCCA	1 cut(s)	1163
MroI	TCCGGA	1 cut(s)	1385
MroXI	GAANNNNTTC	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	1163
MseI	TTAA	6 cut(s)	341, 506, 725, 972, 1320, 1332
Msp20I	TGGCCA	1 cut(s)	1163
MspA1I	CMGCKG	2 cut(s)	356, 557
MspI	CCGG	6 cut(s)	29, 711, 872, 1147, 1386, 1522
MspR9I	CCNGG	5 cut(s)	30, 337, 780, 872, 1148
MunI	CAATTG	1 cut(s)	498
Mva1269I	GAATGC	2 cut(s)	67, 74
MvaI	CCWGG	2 cut(s)	337, 780
NciI	CCSGG	3 cut(s)	30, 872, 1148
NdeI	CATATG	1 cut(s)	997
NdeII	GATC	8 cut(s)	33, 589, 793, 900, 1285, 1382, 1422, 1504
NlaIII	CATG	5 cut(s)	61, 742, 1208, 1247, 1266
NlaIV	GGNNCC	3 cut(s)	23, 119, 718
NspI	RCATGY	1 cut(s)	1266
PaeI	GCATGC	1 cut(s)	1266
PagI	TCATGA	1 cut(s)	1243
PciSI	GCTCTTC	1 cut(s)	651
PctI	GAATGC	2 cut(s)	67, 74
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	263, 346
PfoI	TCCNGGA	1 cut(s)	778
Psp6I	CCWGG	2 cut(s)	335, 778
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	2 cut(s)	335, 778
PspN4I	GGNNCC	3 cut(s)	23, 119, 718
PspPI	GGNCC	1 cut(s)	1435
PsuI	RGATCY	1 cut(s)	793
PvuII	CAGCTG	2 cut(s)	356, 557
RsaI	GTAC	5 cut(s)	23, 111, 152, 253, 1282
RsaNI	GTAC	5 cut(s)	22, 110, 151, 252, 1281
SalI	GTCGAC	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	651
SaqAI	TTAA	6 cut(s)	341, 506, 725, 972, 1320, 1332
Sau3AI	GATC	8 cut(s)	33, 589, 793, 900, 1285, 1382, 1422, 1504
Sau96I	GGNCC	1 cut(s)	1435
ScaI	AGTACT	1 cut(s)	152
ScrFI	CCNGG	5 cut(s)	30, 337, 780, 872, 1148
SfaNI	GCATC	5 cut(s)	103, 199, 576, 825, 1203
SinI	GGWCC	1 cut(s)	1435
SphI	GCATGC	1 cut(s)	1266
SsiI	CCGC	6 cut(s)	26, 51, 54, 89, 92, 904
SspMI	CTAG	2 cut(s)	528, 674
StyD4I	CCNGG	5 cut(s)	28, 335, 778, 870, 1146
StyI	CCWWGG	1 cut(s)	1402
TaaI	ACNGT	4 cut(s)	8, 292, 961, 1439
TaiI	ACGT	2 cut(s)	367, 430
TaqI	TCGA	5 cut(s)	309, 922, 1152, 1381, 1503
TatI	WGTACW	2 cut(s)	109, 150
TauI	GCSGC	3 cut(s)	54, 57, 94
TfiI	GAWTC	2 cut(s)	263, 346
Tru1I	TTAA	6 cut(s)	341, 506, 725, 972, 1320, 1332
Tru9I	TTAA	6 cut(s)	341, 506, 725, 972, 1320, 1332
TscAI	CASTG	3 cut(s)	227, 1085, 1480
TspDTI	ATGAA	3 cut(s)	17, 74, 1232
TspGWI	ACGGA	1 cut(s)	1241
TspRI	CASTG	3 cut(s)	227, 1085, 1480
VpaK11BI	GGWCC	1 cut(s)	1435
XapI	RAATTY	5 cut(s)	690, 786, 875, 1417, 1488
XceI	RCATGY	1 cut(s)	1266
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	2 cut(s)	528, 674
ZrmI	AGTACT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.