Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006588

Physical Location & Seq

Genomic Coordinates Forward (+)

12322392 .. 12329273

Gene Structure 6882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13810.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGAACAACAACAACAGAGGGAGGTACCCGCCGGGGATCGGAGCCGGGCGCGGCGGCGGCGGAGGCATGAATGCGAACCCGCCGTTTCAGTCGCGACCGCCGCACCAGCAGCAGCAATACGTACAGAGGAATCTGTTGCCGAACCAACAGCAACAGCAGCAGTACTATCAGCAACAGCAGCAGCACCATCACCAACAGCAGCAGCATCACCAGCAGCAGCAGCAGCAGTGGCTCAGGAGGGGCCAGTTGGGTGGCAGCACCAGTGCCGATTCCGCCGTCGACGAGGTTGAGAAGACTGTGCAGTCTGAGGCCGTCGATCCAAGTTCGCAAGATTGGAAGGCAAGGTTAAAGATTCCTCCAGCTGATACACGCTTCAGAACAGAGGATGTTACTGCAACTAAAGGAAATGAGTTCGAGGACTACTTTTTGAAACGTGAGCTACTGATGGGAATATATGAGAAGGGATTTGAAAGACCATCTCCTATTCAGGAAGAAAGTATACCAATTGCTTTAACTGGTAGTGATATTCTTGCTAGAGCTAAAAATGGAACGGGGAAAACGGCTGCATTTTGCATTCCTGCTTTGGAAAAAATTGATCAAGATAACAACGTAATTCAAGTTGTTATACTGGTTCCAACCCGTGAGTTGGCCCTTCAAACATCTCAAGTCTGTAAGGAGCTAGGGAAGCATTTAAAAATTCAAGTTATGGTTACTACTGGAGGTACCAGCTTAAAGGACGATATCATGCGTTTGTACCAACCAGTTCACTTACTCGTTGGAACTCCTGGAAGAATTTTAGATCTTTCTAAGAAAGGTGTTTGCATCTTGAAAGACTGCTCTATGCTTGTTATGGACGAGGCTGATAAACTTTTGTCTCCGGAGTTTCAACCTTCAGTGGAGCAGCTTATCCGCTTCTTGCCTTCAAATCGGCAAATTTTGATGTTTTCAGCTACATTTCCTGTTACTGTCAAGGACTTCAAAGATAGATATCTGCACAAGCCTTACGTTATCAACCTTATGGATGAGCTTACTCTAAAGGGTATCACACAGTTCTATGCTTTTGTCGAGGAGAGACAGAAAGTTCACTGCCTAAACACTCTTTTCTCCAAGCTTCAAATAAACCAGTCAATAATATTCTGCAACTCTGTGAATCGGGTGGAGTTATTGGCCAAGAAAATTACAGAACTGGGCTATTCATGCTTTTATATTCATGCAAAGATGCTGCAAGACCATCGTAACAGAGTATTCCATGACTTTCGTAACGGCGCATGCAGAAATCTTGTTTGTACTGACCTATTTACAAGAGGAATAGATATTCAAGCGGTCAATGTTGTCATTAACTTTGATTTTCCAAAGAACTCAGAGACATATCTGCACAGGGTTGGACGATCTGGAAGGTTTGGACACCTTGGTTTGGCTGTGAATTTGATCACCTATGAGGACCGTTTCAACTTGTATAGAATTGAGCAAGAACTTGGCACTGAGATCAAGCAAATTCCTCCGCATATTGATCAGGCAATTTATTGCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

511

Amino Acids

58.31

Weight (kDa)

8.76

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	160 - 325	1.3e-47	DEAD/DEAH box helicase
Helicase_C	PF00271	360 - 468	6.3e-32	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45810 AT3G61240 AT3G61240 AT4G00660 AT4G00660
fragaria_vesca	FvH4_7g13810 FvH4_7g13810 FvH4_7g13810 FvH4_7g13810 FvH4_7g13810 FvH4_7g13810
malus_domestica	MD01G1054200.v1.1 MD07G1141100.v1.1
prunus_persica	Prupe.2G163800_v2.0.a1
pyrus_communis	pycom01g07950 pycom07g13890
rosa_chinensis	RchiOBHm_Chr1g0353991
rosa_laevigata	RLG00000028238
rosa_multiflora	Rmu_sc0001763.1_g000011
rosa_roxburghii	Rroxscaffold_4G00301390
rosa_rugosa	Rorug01G0239700
rosa_samantha	Rh1AG251200 Rh1BG222800 Rh1CG235400 Rh1DG249700
rosa_wichuraiana	Rw1G021910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	301
Acc65I	GGTACC	2 cut(s)	24, 722
AccB1I	GGYRCC	2 cut(s)	24, 722
AccI	GTMKAC	2 cut(s)	279, 499
AccII	CGCG	2 cut(s)	51, 94
AccIII	TCCGGA	1 cut(s)	877
AclWI	GGATC	2 cut(s)	44, 311
AcoI	YGGCCR	1 cut(s)	1167
AcsI	RAATTY	5 cut(s)	696, 792, 933, 1423, 1494
AcuI	CTGAAG	2 cut(s)	358, 876
AfaI	GTAC	6 cut(s)	26, 123, 164, 724, 755, 1288
AfiI	CCNNNNNNNGG	3 cut(s)	38, 646, 1414
AjnI	CCWGG	1 cut(s)	784
AluBI	AGCT	9 cut(s)	362, 439, 539, 679, 729, 904, 950, 1027, 1111
AluI	AGCT	9 cut(s)	362, 439, 539, 679, 729, 904, 950, 1027, 1111
Alw26I	GTCTC	3 cut(s)	879, 1066, 1358
AlwI	GGATC	2 cut(s)	44, 311
Aor13HI	TCCGGA	1 cut(s)	877
AoxI	GGCC	4 cut(s)	241, 309, 648, 1167
ApoI	RAATTY	5 cut(s)	696, 792, 933, 1423, 1494
Asp718I	GGTACC	2 cut(s)	24, 722
AspLEI	GCGC	2 cut(s)	51, 1268
AspS9I	GGNCC	3 cut(s)	241, 649, 1441
AsuC2I	CCSGG	2 cut(s)	33, 46
AsuHPI	GGTGA	3 cut(s)	182, 200, 1423
AvaII	GGWCC	1 cut(s)	1441
BalI	TGGCCA	1 cut(s)	1169
BanI	GGYRCC	2 cut(s)	24, 722
BarI	GAAGNNNNNNTAC	2 cut(s)	483, 515
BbsI	GAAGAC	1 cut(s)	299
BccI	CCATC	4 cut(s)	195, 439, 484, 1239
BceAI	ACGGC	5 cut(s)	67, 260, 296, 576, 1279
BcgI	CGANNNNNNTGC	2 cut(s)	1214, 1248
BciT130I	CCWGG	1 cut(s)	786
BclI	TGATCA	3 cut(s)	595, 1428, 1510
BcnI	CCSGG	2 cut(s)	33, 46
BcoDI	GTCTC	3 cut(s)	879, 1066, 1358
BfaI	CTAG	2 cut(s)	534, 680
BglII	AGATCT	1 cut(s)	799
BmcAI	AGTACT	1 cut(s)	164
Bme1390I	CCNGG	3 cut(s)	33, 46, 786
Bme18I	GGWCC	1 cut(s)	1441
BmgT120I	GGNCC	3 cut(s)	241, 649, 1441
BmiI	GGNNCC	5 cut(s)	26, 43, 242, 633, 724
BmrFI	CCNGG	3 cut(s)	33, 46, 786
BmrI	ACTGGG	1 cut(s)	1196
BmsI	GCATC	3 cut(s)	214, 831, 1209
BmuI	ACTGGG	1 cut(s)	1196
BpiI	GAAGAC	1 cut(s)	299
BpmI	CTGGAG	2 cut(s)	342, 738
Bpu10I	CCTNAGC	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	648
BpuMI	CCSGG	2 cut(s)	33, 46
BsaAI	YACGTR	1 cut(s)	121
BsaBI	GATNNNNATC	1 cut(s)	987
BsaJI	CCNNGG	2 cut(s)	32, 1408
BsaWI	WCCGGW	1 cut(s)	877
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 646, 1414
Bse118I	RCCGGY	1 cut(s)	1527
Bse1I	ACTGG	8 cut(s)	244, 261, 520, 633, 721, 761, 1123, 1191
Bse8I	GATNNNNATC	1 cut(s)	987
BseAI	TCCGGA	1 cut(s)	877
BseBI	CCWGG	1 cut(s)	786
BseDI	CCNNGG	2 cut(s)	32, 1408
BseGI	GGATG	2 cut(s)	391, 1027
BseJI	GATNNNNATC	1 cut(s)	987
BseLI	CCNNNNNNNGG	3 cut(s)	38, 646, 1414
BseMII	CTCAG	4 cut(s)	247, 297, 1374, 1473
BseNI	ACTGG	8 cut(s)	244, 261, 520, 633, 721, 761, 1123, 1191
BseRI	GAGGAG	1 cut(s)	1082
BsgI	GTGCAG	3 cut(s)	320, 977, 1358
Bsh1236I	CGCG	2 cut(s)	51, 94
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	4 cut(s)	243, 311, 650, 1169
BshNI	GGYRCC	2 cut(s)	24, 722
BsiEI	CGRYCG	1 cut(s)	98
BsiSI	CCGG	4 cut(s)	32, 45, 878, 1528
BslI	CCNNNNNNNGG	3 cut(s)	38, 646, 1414
BsmAI	GTCTC	3 cut(s)	879, 1066, 1358
BsmI	GAATGC	2 cut(s)	76, 573
BsnI	GGCC	4 cut(s)	243, 311, 650, 1169
Bsp13I	TCCGGA	1 cut(s)	877
Bsp143I	GATC	8 cut(s)	36, 316, 595, 799, 1388, 1428, 1485, 1510
Bsp68I	TCGCGA	1 cut(s)	94
BspANI	GGCC	4 cut(s)	243, 311, 650, 1169
BspCNI	CTCAG	4 cut(s)	246, 298, 1373, 1474
BspEI	TCCGGA	1 cut(s)	877
BspFNI	CGCG	2 cut(s)	51, 94
BspLI	GGNNCC	5 cut(s)	26, 43, 242, 633, 724
BspPI	GGATC	2 cut(s)	44, 311
BspT107I	GGYRCC	2 cut(s)	24, 722
BsrFI	RCCGGY	1 cut(s)	1527
BsrI	ACTGG	8 cut(s)	244, 261, 520, 633, 721, 761, 1123, 1191
BssAI	RCCGGY	1 cut(s)	1527
BssECI	CCNNGG	2 cut(s)	32, 1408
BssMI	GATC	8 cut(s)	36, 316, 595, 799, 1388, 1428, 1485, 1510
BssNAI	GTATAC	1 cut(s)	500
BssT1I	CCWWGG	1 cut(s)	1408
Bst1107I	GTATAC	1 cut(s)	500
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	4 cut(s)	298, 967, 1050, 1445
BstBAI	YACGTR	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	1270
BstDEI	CTNAG	5 cut(s)	233, 306, 807, 1360, 1482
BstF5I	GGATG	2 cut(s)	391, 1027
BstFNI	CGCG	2 cut(s)	51, 94
BstHHI	GCGC	2 cut(s)	51, 1268
BstKTI	GATC	8 cut(s)	39, 319, 598, 802, 1391, 1431, 1488, 1513
BstMAI	GTCTC	3 cut(s)	879, 1066, 1358
BstMBI	GATC	8 cut(s)	36, 316, 595, 799, 1388, 1428, 1485, 1510
BstMCI	CGRYCG	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	786
BstNSI	RCATGY	1 cut(s)	1272
BstSCI	CCNGG	3 cut(s)	31, 44, 784
BstSNI	TACGTA	1 cut(s)	121
BstUI	CGCG	2 cut(s)	51, 94
BstV2I	GAAGAC	1 cut(s)	299
BstX2I	RGATCY	1 cut(s)	799
BstXI	CCANNNNNNTGG	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	799
BstZ17I	GTATAC	1 cut(s)	500
BsuRI	GGCC	4 cut(s)	243, 311, 650, 1169
BtsCI	GGATG	2 cut(s)	391, 1027
BtsI	GCAGTG	2 cut(s)	233, 1084
BtsIMutI	CAGTG	5 cut(s)	233, 268, 900, 1084, 1479
BtuMI	TCGCGA	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	1270
CfoI	GCGC	2 cut(s)	51, 1268
Cfr10I	RCCGGY	1 cut(s)	1527
Cfr13I	GGNCC	3 cut(s)	241, 649, 1441
Csp6I	GTAC	6 cut(s)	25, 122, 163, 723, 754, 1287
CviAII	CATG	6 cut(s)	67, 745, 1197, 1211, 1250, 1269
CviQI	GTAC	6 cut(s)	25, 122, 163, 723, 754, 1287
DdeI	CTNAG	5 cut(s)	233, 306, 807, 1360, 1482
DpnI	GATC	8 cut(s)	38, 318, 597, 801, 1390, 1430, 1487, 1512
DpnII	GATC	8 cut(s)	36, 316, 595, 799, 1388, 1428, 1485, 1510
DraI	TTTAAA	1 cut(s)	693
DrdI	GACNNNNNNGTC	1 cut(s)	301
DseDI	GACNNNNNNGTC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	1167
EciI	GGCGGA	2 cut(s)	75, 262
Eco105I	TACGTA	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	1408
Eco32I	GATATC	2 cut(s)	742, 989
Eco47I	GGWCC	1 cut(s)	1441
Eco57I	CTGAAG	2 cut(s)	358, 876
EcoRII	CCWGG	1 cut(s)	784
EcoRV	GATATC	2 cut(s)	742, 989
EcoT14I	CCWWGG	1 cut(s)	1408
ErhI	CCWWGG	1 cut(s)	1408
FaeI	CATG	6 cut(s)	70, 748, 1200, 1214, 1253, 1272
FatI	CATG	6 cut(s)	66, 744, 1196, 1210, 1249, 1268
FauI	CCCGC	2 cut(s)	36, 87
FbaI	TGATCA	3 cut(s)	595, 1428, 1510
FblI	GTMKAC	2 cut(s)	279, 499
FokI	GGATG	2 cut(s)	398, 1034
FspBI	CTAG	2 cut(s)	534, 680
GlaI	GCGC	2 cut(s)	50, 1267
GsuI	CTGGAG	2 cut(s)	342, 738
HaeIII	GGCC	4 cut(s)	243, 311, 650, 1169
HapII	CCGG	4 cut(s)	32, 45, 878, 1528
HhaI	GCGC	2 cut(s)	51, 1268
Hin1II	CATG	6 cut(s)	70, 748, 1200, 1214, 1253, 1272
Hin6I	GCGC	2 cut(s)	49, 1266
HinP1I	GCGC	2 cut(s)	49, 1266
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	1109
HinfI	GANTC	4 cut(s)	130, 269, 352, 1150
HpaII	CCGG	4 cut(s)	32, 45, 878, 1528
HphI	GGTGA	3 cut(s)	182, 200, 1423
Hpy166II	GTNNAC	4 cut(s)	280, 500, 766, 1084
Hpy188I	TCNGA	4 cut(s)	41, 307, 377, 1363
Hpy188III	TCNNGA	7 cut(s)	93, 235, 488, 599, 826, 878, 1392
Hpy8I	GTNNAC	4 cut(s)	280, 500, 766, 1084
Hpy99I	CGWCG	3 cut(s)	281, 284, 317
HpyAV	CCTTC	6 cut(s)	331, 454, 662, 900, 930, 1389
HpyCH4III	ACNGT	4 cut(s)	298, 967, 1050, 1445
HpyCH4IV	ACGT	4 cut(s)	120, 433, 609, 1005
HpyF3I	CTNAG	5 cut(s)	233, 306, 807, 1360, 1482
HpySE526I	ACGT	4 cut(s)	120, 433, 609, 1005
Hsp92II	CATG	6 cut(s)	70, 748, 1200, 1214, 1253, 1272
HspAI	GCGC	2 cut(s)	49, 1266
Kpn2I	TCCGGA	1 cut(s)	877
KpnI	GGTACC	2 cut(s)	28, 726
Ksp22I	TGATCA	3 cut(s)	595, 1428, 1510
Kzo9I	GATC	8 cut(s)	36, 316, 595, 799, 1388, 1428, 1485, 1510
LmnI	GCTCC	3 cut(s)	41, 676, 898
LweI	GCATC	3 cut(s)	214, 831, 1209
MaeI	CTAG	2 cut(s)	534, 680
MaeII	ACGT	4 cut(s)	120, 433, 609, 1005
MaeIII	GTNAC	5 cut(s)	388, 709, 961, 1235, 1259
MalI	GATC	8 cut(s)	38, 318, 597, 801, 1390, 1430, 1487, 1512
MboI	GATC	8 cut(s)	36, 316, 595, 799, 1388, 1428, 1485, 1510
MboII	GAAGA	3 cut(s)	304, 503, 801
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	1 cut(s)	799
MlsI	TGGCCA	1 cut(s)	1169
MluNI	TGGCCA	1 cut(s)	1169
MmeI	TCCRAC	3 cut(s)	659, 757, 1363
Mox20I	TGGCCA	1 cut(s)	1169
MroI	TCCGGA	1 cut(s)	877
MscI	TGGCCA	1 cut(s)	1169
MseI	TTAA	5 cut(s)	347, 512, 692, 731, 1338
Msp20I	TGGCCA	1 cut(s)	1169
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	4 cut(s)	32, 45, 878, 1528
MspR9I	CCNGG	3 cut(s)	33, 46, 786
MunI	CAATTG	1 cut(s)	504
Mva1269I	GAATGC	2 cut(s)	76, 573
MvaI	CCWGG	1 cut(s)	786
MvnI	CGCG	2 cut(s)	51, 94
NciI	CCSGG	2 cut(s)	33, 46
NdeII	GATC	8 cut(s)	36, 316, 595, 799, 1388, 1428, 1485, 1510
NlaIII	CATG	6 cut(s)	70, 748, 1200, 1214, 1253, 1272
NlaIV	GGNNCC	5 cut(s)	26, 43, 242, 633, 724
NruI	TCGCGA	1 cut(s)	94
NspI	RCATGY	1 cut(s)	1272
PaeI	GCATGC	1 cut(s)	1272
PctI	GAATGC	2 cut(s)	76, 573
PfeI	GAWTC	4 cut(s)	130, 269, 352, 1150
PfoI	TCCNGGA	1 cut(s)	784
Ppu21I	YACGTR	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	784
PspN4I	GGNNCC	5 cut(s)	26, 43, 242, 633, 724
PspPI	GGNCC	3 cut(s)	241, 649, 1441
PsuI	RGATCY	1 cut(s)	799
PvuII	CAGCTG	1 cut(s)	362
RruI	TCGCGA	1 cut(s)	94
RsaI	GTAC	6 cut(s)	26, 123, 164, 724, 755, 1288
RsaNI	GTAC	6 cut(s)	25, 122, 163, 723, 754, 1287
SalI	GTCGAC	1 cut(s)	278
SaqAI	TTAA	5 cut(s)	347, 512, 692, 731, 1338
Sau3AI	GATC	8 cut(s)	36, 316, 595, 799, 1388, 1428, 1485, 1510
Sau96I	GGNCC	3 cut(s)	241, 649, 1441
ScaI	AGTACT	1 cut(s)	164
ScrFI	CCNGG	3 cut(s)	33, 46, 786
SfaNI	GCATC	3 cut(s)	214, 831, 1209
SgrDI	CGTCGACG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	1441
SmlI	CTYRAG	1 cut(s)	663
SmoI	CTYRAG	1 cut(s)	663
SnaBI	TACGTA	1 cut(s)	121
SphI	GCATGC	1 cut(s)	1272
SspI	AATATT	1 cut(s)	1134
SspMI	CTAG	2 cut(s)	534, 680
StyD4I	CCNGG	3 cut(s)	31, 44, 784
StyI	CCWWGG	1 cut(s)	1408
TaaI	ACNGT	4 cut(s)	298, 967, 1050, 1445
TaiI	ACGT	4 cut(s)	123, 436, 612, 1008
TaqI	TCGA	4 cut(s)	279, 315, 414, 1065
TatI	WGTACW	2 cut(s)	162, 1286
TauI	GCSGC	4 cut(s)	54, 57, 60, 103
TfiI	GAWTC	4 cut(s)	130, 269, 352, 1150
Tru1I	TTAA	5 cut(s)	347, 512, 692, 731, 1338
Tru9I	TTAA	5 cut(s)	347, 512, 692, 731, 1338
TscAI	CASTG	5 cut(s)	233, 268, 900, 1091, 1486
TspDTI	ATGAA	4 cut(s)	17, 83, 1185, 1199
TspRI	CASTG	5 cut(s)	233, 268, 900, 1091, 1486
VpaK11BI	GGWCC	1 cut(s)	1441
XapI	RAATTY	5 cut(s)	696, 792, 933, 1423, 1494
XceI	RCATGY	1 cut(s)	1272
XmiI	GTMKAC	2 cut(s)	279, 499
XspI	CTAG	2 cut(s)	534, 680
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.