MD07G1141100.v1.1

Belongs to the DEAD box helicase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
20452900 .. 20460639
7740 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1141100.v1.1.491

Sequence Viewer

Length: 1512 bp
ATGAACAGTAATAGAGGTAGGTACCCTCCGGGGATCGGAGCTGGGAGGGGCGGTGGCATGAATGCGAACCCTGCATTCCAGTCTCGGCCGCCGCATCAGCAGCAGTATGTACAGAGGAACCTTTTGCCGAACCATCATCACCAGCAGCAGTACTTTCAACAGCAGCAACAACACCAACAACACCAACAGTATCAACAGCAACAGCAGTGGCTTAGGAGAGGCCAGTTGGGTGGGAGTACAAGTGCTGATTCGGCCGTTGATGAGGTGGAAAAGACCGTGCAGTCGGAAGCTGTTGACCCAAGTTCGCAAGATTGGAAGGCGAGATTAAAGATTCCAGCACCTGATACACGTTTCAGAACAGAGGATGTAACTGCAACAAAAGGAAATGAGTTTGAGGACTATTTTCTGAAACGTGAGCTGTTGATGGGAATATATGAGAAGGGATTTGAAAGACCATCTCCTATTCAAGAAGAAAGTATTCCAATTGCTTTAACCGGTAGTGATATTCTTGCTAGAGCTAAAAATGGAACGGGAAAGACAGCTGCTTTTTGCATCCCTGCTTTGGAAAAAATTGATCAAGATAACAATGTGATACAAGTTGTTATTCTTGTTCCAACTCGTGAGTTGGCTCTTCAAACATCACAAGTCTGTAAGGAACTAGGGAAGCATTTGCAAATTCAAGTTATGGTTACAACCGGAGGTACCAGCTTAAAGGATGATATCATGCGTTTATATCAACCGGTTCACTTACTTGTTGGAACTCCTGGAAGGATTTTAGATCTTGCAAAGAAAGGTGTTTGCATCTTGAAAGATTGTTCTATGCTTGTTATGGATGAGGCTGATAAACTTTTGTCCCCGGAATTTCAACCTTCAGTAGAGCAGTTGATCCGCTTCTTACCTTCACATCGACAGATTTTGATGTTTTCAGCTACATTTCCTGTTACTGTCAAGGACTTTAAGGATAGATTTCTGCAAAAACCATATGTTATCAATCTTATGGATGAGCTTACTCTAAAGGGTATTACACAATTTTACGCCTTTGTTGAGGAGAGACAGAAAGTCCACTGCCTAAACACCCTTTTCTCAAAGCTTCAAATAAACCAGTCAATCATATTCTGTAATTCTGTGAATCGGGTAGAATTGTTGGCCAAGAAAATAACAGAACTCGGCTATTCGTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGTAACAGAGTATTTCATGACTTCCGTAATGGTGCATGCAGAAATCTTGTTTGTACTGATCTTTTTACAAGAGGAATAGATATTCAAGCTGTTAATGTTGTCATTAACTTTGATTTTCCAAAGAACTCAGAGACATATCTTCACAGGGTTGGTCGATCTGGAAGGTTTGGACACCTTGGTTTAGCTGTGAATTTGATCACCTATGAGGACCGTTTCAACTTGTATAGAATTGAGCAAGAACTTGGCACTGAGATAAAGCAAATTCCTCCCCATATCGATCAGGCAATTTATTGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

504

Amino Acids

57.51

Weight (kDa)

8.67

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 153 - 318 2e-47 DEAD/DEAH box helicase
Helicase_C PF00271 353 - 461 6.1e-32 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 280
Acc65I GGTACC 2 cut(s) 21, 701
AccB1I GGYRCC 2 cut(s) 21, 701
AciI CCGC 4 cut(s) 51, 89, 92, 889
AclWI GGATC 2 cut(s) 41, 880
AcoI YGGCCR 3 cut(s) 86, 252, 1146
AcsI RAATTY 4 cut(s) 675, 860, 1402, 1473
AcuI CTGAAG 1 cut(s) 855
AfaI GTAC 6 cut(s) 23, 111, 152, 238, 703, 1267
AfiI CCNNNNNNNGG 2 cut(s) 35, 562
AflIII ACRYGT 1 cut(s) 347
AgeI ACCGGT 2 cut(s) 494, 739
AhdI GACNNNNNGTC 1 cut(s) 1058
AjnI CCWGG 1 cut(s) 763
Alw26I GTCTC 3 cut(s) 87, 1045, 1337
AlwI GGATC 2 cut(s) 41, 880
AlwNI CAGNNNCTG 1 cut(s) 341
AoxI GGCC 4 cut(s) 86, 220, 252, 1146
ApeKI GCWGC 5 cut(s) 100, 145, 163, 542, 1201
ApoI RAATTY 4 cut(s) 675, 860, 1402, 1473
AsiGI ACCGGT 2 cut(s) 494, 739
Asp700I GAANNNNTTC 1 cut(s) 477
Asp718I GGTACC 2 cut(s) 21, 701
AspS9I GGNCC 1 cut(s) 1420
AsuC2I CCSGG 2 cut(s) 30, 857
AsuHPI GGTGA 2 cut(s) 131, 1402
AvaII GGWCC 1 cut(s) 1420
BalI TGGCCA 1 cut(s) 1148
BanI GGYRCC 2 cut(s) 21, 701
BauI CACGAG 1 cut(s) 618
BbvI GCAGC 5 cut(s) 112, 157, 175, 529, 1188
BccI CCATC 4 cut(s) 141, 418, 463, 1218
BceAI ACGGC 1 cut(s) 239
BcgI CGANNNNNNTGC 2 cut(s) 1193, 1227
BciT130I CCWGG 1 cut(s) 765
BclI TGATCA 2 cut(s) 574, 1407
BcnI CCSGG 2 cut(s) 30, 857
BcoDI GTCTC 3 cut(s) 87, 1045, 1337
BfaI CTAG 2 cut(s) 513, 659
BglII AGATCT 1 cut(s) 778
BisI GCNGC 7 cut(s) 89, 92, 101, 146, 164, 543, 1202
BlsI GCNGC 7 cut(s) 90, 93, 102, 147, 165, 544, 1203
BmcAI AGTACT 1 cut(s) 152
Bme1390I CCNGG 3 cut(s) 30, 765, 857
Bme18I GGWCC 1 cut(s) 1420
BmeRI GACNNNNNGTC 1 cut(s) 1058
BmgT120I GGNCC 1 cut(s) 1420
BmiI GGNNCC 3 cut(s) 23, 119, 703
BmrFI CCNGG 3 cut(s) 30, 765, 857
BmsI GCATC 4 cut(s) 103, 561, 810, 1188
Bpu10I CCTNAGC 1 cut(s) 212
BpuMI CCSGG 2 cut(s) 30, 857
Bsa29I ATCGAT 1 cut(s) 1488
BsaJI CCNNGG 3 cut(s) 29, 855, 1387
BsaWI WCCGGW 3 cut(s) 494, 695, 739
BsaXI ACNNNNNCTCC 4 cut(s) 37, 67, 226, 256
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 562
Bse118I RCCGGY 3 cut(s) 494, 739, 1506
Bse1I ACTGG 3 cut(s) 79, 223, 1102
BseBI CCWGG 1 cut(s) 765
BseCI ATCGAT 1 cut(s) 1488
BseDI CCNNGG 3 cut(s) 29, 855, 1387
BseGI GGATG 5 cut(s) 370, 552, 721, 838, 1006
BseLI CCNNNNNNNGG 2 cut(s) 35, 562
BseMII CTCAG 2 cut(s) 1353, 1452
BseNI ACTGG 3 cut(s) 79, 223, 1102
BseRI GAGGAG 1 cut(s) 1061
BseX3I CGGCCG 2 cut(s) 86, 252
BseXI GCAGC 5 cut(s) 112, 157, 175, 529, 1188
BseYI CCCAGC 1 cut(s) 41
BsgI GTGCAG 1 cut(s) 299
Bsh1285I CGRYCG 2 cut(s) 89, 255
BshFI GGCC 4 cut(s) 88, 222, 254, 1148
BshNI GGYRCC 2 cut(s) 21, 701
BshTI ACCGGT 2 cut(s) 494, 739
BshVI ATCGAT 1 cut(s) 1488
BsiEI CGRYCG 2 cut(s) 89, 255
BsiSI CCGG 6 cut(s) 29, 495, 696, 740, 857, 1507
BslFI GGGAC 1 cut(s) 838
BslI CCNNNNNNNGG 2 cut(s) 35, 562
BsmAI GTCTC 3 cut(s) 87, 1045, 1337
BsmFI GGGAC 1 cut(s) 838
BsmI GAATGC 2 cut(s) 67, 74
BsnI GGCC 4 cut(s) 88, 222, 254, 1148
Bsp1407I TGTACA 1 cut(s) 109
Bsp143I GATC 8 cut(s) 33, 574, 778, 885, 1270, 1367, 1407, 1489
BspACI CCGC 4 cut(s) 51, 89, 92, 889
BspANI GGCC 4 cut(s) 88, 222, 254, 1148
BspCNI CTCAG 2 cut(s) 1352, 1453
BspDI ATCGAT 1 cut(s) 1488
BspHI TCATGA 1 cut(s) 1228
BspLI GGNNCC 3 cut(s) 23, 119, 703
BspPI GGATC 2 cut(s) 41, 880
BspQI GCTCTTC 1 cut(s) 636
BspT107I GGYRCC 2 cut(s) 21, 701
BsrFI RCCGGY 3 cut(s) 494, 739, 1506
BsrGI TGTACA 1 cut(s) 109
BsrI ACTGG 3 cut(s) 79, 223, 1102
BssAI RCCGGY 3 cut(s) 494, 739, 1506
BssECI CCNNGG 3 cut(s) 29, 855, 1387
BssMI GATC 8 cut(s) 33, 574, 778, 885, 1270, 1367, 1407, 1489
BssSI CACGAG 1 cut(s) 618
BssT1I CCWWGG 1 cut(s) 1387
Bst2BI CACGAG 1 cut(s) 618
Bst2UI CCWGG 1 cut(s) 765
Bst4CI ACNGT 5 cut(s) 8, 189, 277, 946, 1424
Bst6I CTCTTC 1 cut(s) 636
BstAUI TGTACA 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 1249
BstDEI CTNAG 3 cut(s) 212, 1339, 1461
BstF5I GGATG 5 cut(s) 370, 552, 721, 838, 1006
BstKTI GATC 8 cut(s) 36, 577, 781, 888, 1273, 1370, 1410, 1492
BstMAI GTCTC 3 cut(s) 87, 1045, 1337
BstMBI GATC 8 cut(s) 33, 574, 778, 885, 1270, 1367, 1407, 1489
BstMCI CGRYCG 2 cut(s) 89, 255
BstMWI GCNNNNNNNGC 4 cut(s) 71, 97, 100, 251
BstNI CCWGG 1 cut(s) 765
BstNSI RCATGY 1 cut(s) 1251
BstSCI CCNGG 3 cut(s) 28, 763, 855
BstV1I GCAGC 5 cut(s) 112, 157, 175, 529, 1188
BstX2I RGATCY 1 cut(s) 778
BstXI CCANNNNNNTGG 1 cut(s) 230
BstYI RGATCY 1 cut(s) 778
BstZI CGGCCG 2 cut(s) 86, 252
Bsu15I ATCGAT 1 cut(s) 1488
BsuRI GGCC 4 cut(s) 88, 222, 254, 1148
BsuTUI ATCGAT 1 cut(s) 1488
BtsCI GGATG 5 cut(s) 370, 552, 721, 838, 1006
BtsI GCAGTG 2 cut(s) 212, 1063
BtsIMutI CAGTG 3 cut(s) 212, 1063, 1458
Cac8I GCNNGC 1 cut(s) 1249
CaiI CAGNNNCTG 1 cut(s) 341
CciI TCATGA 1 cut(s) 1228
Cfr10I RCCGGY 3 cut(s) 494, 739, 1506
Cfr13I GGNCC 1 cut(s) 1420
ClaI ATCGAT 1 cut(s) 1488
Csp6I GTAC 6 cut(s) 22, 110, 151, 237, 702, 1266
CspAI ACCGGT 2 cut(s) 494, 739
CspCI CAANNNNNGTGG 2 cut(s) 188, 223
CviAII CATG 5 cut(s) 58, 724, 1190, 1229, 1248
CviQI GTAC 6 cut(s) 22, 110, 151, 237, 702, 1266
DdeI CTNAG 3 cut(s) 212, 1339, 1461
DpnI GATC 8 cut(s) 35, 576, 780, 887, 1272, 1369, 1409, 1491
DpnII GATC 8 cut(s) 33, 574, 778, 885, 1270, 1367, 1407, 1489
DrdI GACNNNNNNGTC 1 cut(s) 280
DriI GACNNNNNGTC 1 cut(s) 1058
DseDI GACNNNNNNGTC 1 cut(s) 280
EaeI YGGCCR 3 cut(s) 86, 252, 1146
EagI CGGCCG 2 cut(s) 86, 252
Eam1104I CTCTTC 1 cut(s) 636
Eam1105I GACNNNNNGTC 1 cut(s) 1058
EarI CTCTTC 1 cut(s) 636
EclXI CGGCCG 2 cut(s) 86, 252
Eco130I CCWWGG 1 cut(s) 1387
Eco32I GATATC 1 cut(s) 721
Eco47I GGWCC 1 cut(s) 1420
Eco52I CGGCCG 2 cut(s) 86, 252
Eco57I CTGAAG 1 cut(s) 855
EcoRII CCWGG 1 cut(s) 763
EcoRV GATATC 1 cut(s) 721
EcoT14I CCWWGG 1 cut(s) 1387
ErhI CCWWGG 1 cut(s) 1387
FaeI CATG 5 cut(s) 61, 727, 1193, 1232, 1251
FaqI GGGAC 1 cut(s) 838
FatI CATG 5 cut(s) 57, 723, 1189, 1228, 1247
FauNDI CATATG 1 cut(s) 982
FbaI TGATCA 2 cut(s) 574, 1407
Fnu4HI GCNGC 7 cut(s) 89, 92, 101, 146, 164, 543, 1202
FokI GGATG 5 cut(s) 377, 539, 728, 845, 1013
Fsp4HI GCNGC 7 cut(s) 89, 92, 101, 146, 164, 543, 1202
FspBI CTAG 2 cut(s) 513, 659
GluI GCNGC 7 cut(s) 89, 92, 101, 146, 164, 543, 1202
GsaI CCCAGC 1 cut(s) 45
HaeIII GGCC 4 cut(s) 88, 222, 254, 1148
HapII CCGG 6 cut(s) 29, 495, 696, 740, 857, 1507
Hin1II CATG 5 cut(s) 61, 727, 1193, 1232, 1251
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 1088
HinfI GANTC 3 cut(s) 248, 331, 1129
HpaII CCGG 6 cut(s) 29, 495, 696, 740, 857, 1507
HphI GGTGA 2 cut(s) 131, 1402
Hpy166II GTNNAC 3 cut(s) 295, 745, 1063
Hpy188I TCNGA 5 cut(s) 38, 286, 356, 408, 1342
Hpy188III TCNNGA 6 cut(s) 467, 578, 620, 805, 1229, 1371
Hpy8I GTNNAC 3 cut(s) 295, 745, 1063
HpyAV CCTTC 6 cut(s) 310, 433, 762, 879, 909, 1368
HpyCH4III ACNGT 5 cut(s) 8, 189, 277, 946, 1424
HpyCH4IV ACGT 2 cut(s) 349, 412
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 97, 100, 251
HpyF3I CTNAG 3 cut(s) 212, 1339, 1461
HpySE526I ACGT 2 cut(s) 349, 412
Hsp92II CATG 5 cut(s) 61, 727, 1193, 1232, 1251
KpnI GGTACC 2 cut(s) 25, 705
Ksp22I TGATCA 2 cut(s) 574, 1407
Kzo9I GATC 8 cut(s) 33, 574, 778, 885, 1270, 1367, 1407, 1489
LguI GCTCTTC 1 cut(s) 636
LmnI GCTCC 1 cut(s) 38
Lsp1109I GCAGC 5 cut(s) 112, 157, 175, 529, 1188
LweI GCATC 4 cut(s) 103, 561, 810, 1188
MaeI CTAG 2 cut(s) 513, 659
MaeII ACGT 2 cut(s) 349, 412
MaeIII GTNAC 4 cut(s) 367, 688, 940, 1214
MalI GATC 8 cut(s) 35, 576, 780, 887, 1272, 1369, 1409, 1491
MboI GATC 8 cut(s) 33, 574, 778, 885, 1270, 1367, 1407, 1489
MboII GAAGA 3 cut(s) 482, 623, 1343
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 1 cut(s) 778
MlsI TGGCCA 1 cut(s) 1148
MluNI TGGCCA 1 cut(s) 1148
MmeI TCCRAC 3 cut(s) 264, 638, 736
Mox20I TGGCCA 1 cut(s) 1148
MroXI GAANNNNTTC 1 cut(s) 477
MscI TGGCCA 1 cut(s) 1148
MseI TTAA 6 cut(s) 326, 491, 710, 957, 1305, 1317
Msp20I TGGCCA 1 cut(s) 1148
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 6 cut(s) 29, 495, 696, 740, 857, 1507
MspR9I CCNGG 3 cut(s) 30, 765, 857
MunI CAATTG 1 cut(s) 483
Mva1269I GAATGC 2 cut(s) 67, 74
MvaI CCWGG 1 cut(s) 765
MwoI GCNNNNNNNGC 4 cut(s) 71, 97, 100, 251
NciI CCSGG 2 cut(s) 30, 857
NdeI CATATG 1 cut(s) 982
NdeII GATC 8 cut(s) 33, 574, 778, 885, 1270, 1367, 1407, 1489
NlaIII CATG 5 cut(s) 61, 727, 1193, 1232, 1251
NlaIV GGNNCC 3 cut(s) 23, 119, 703
NmeAIII GCCGAG 2 cut(s) 64, 1146
NspI RCATGY 1 cut(s) 1251
PaeI GCATGC 1 cut(s) 1251
PagI TCATGA 1 cut(s) 1228
PciSI GCTCTTC 1 cut(s) 636
PctI GAATGC 2 cut(s) 67, 74
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 3 cut(s) 248, 331, 1129
PfoI TCCNGGA 1 cut(s) 763
PinAI ACCGGT 2 cut(s) 494, 739
PkrI GCNGC 7 cut(s) 90, 93, 102, 147, 165, 544, 1203
Psp6I CCWGG 1 cut(s) 763
PspFI CCCAGC 1 cut(s) 41
PspGI CCWGG 1 cut(s) 763
PspN4I GGNNCC 3 cut(s) 23, 119, 703
PspPI GGNCC 1 cut(s) 1420
PstNI CAGNNNCTG 1 cut(s) 341
PsuI RGATCY 1 cut(s) 778
PvuII CAGCTG 1 cut(s) 542
RsaI GTAC 6 cut(s) 23, 111, 152, 238, 703, 1267
RsaNI GTAC 6 cut(s) 22, 110, 151, 237, 702, 1266
SapI GCTCTTC 1 cut(s) 636
SaqAI TTAA 6 cut(s) 326, 491, 710, 957, 1305, 1317
SatI GCNGC 7 cut(s) 89, 92, 101, 146, 164, 543, 1202
Sau3AI GATC 8 cut(s) 33, 574, 778, 885, 1270, 1367, 1407, 1489
Sau96I GGNCC 1 cut(s) 1420
ScaI AGTACT 1 cut(s) 152
ScrFI CCNGG 3 cut(s) 30, 765, 857
SfaNI GCATC 4 cut(s) 103, 561, 810, 1188
SinI GGWCC 1 cut(s) 1420
SphI GCATGC 1 cut(s) 1251
SsiI CCGC 4 cut(s) 51, 89, 92, 889
SspMI CTAG 2 cut(s) 513, 659
StyD4I CCNGG 3 cut(s) 28, 763, 855
StyI CCWWGG 1 cut(s) 1387
TaaI ACNGT 5 cut(s) 8, 189, 277, 946, 1424
TaiI ACGT 2 cut(s) 352, 415
TaqI TCGA 3 cut(s) 907, 1366, 1488
TatI WGTACW 4 cut(s) 109, 150, 236, 1265
TauI GCSGC 2 cut(s) 91, 94
TfiI GAWTC 3 cut(s) 248, 331, 1129
Tru1I TTAA 6 cut(s) 326, 491, 710, 957, 1305, 1317
Tru9I TTAA 6 cut(s) 326, 491, 710, 957, 1305, 1317
TscAI CASTG 3 cut(s) 212, 1070, 1465
TseI GCWGC 5 cut(s) 100, 145, 163, 542, 1201
TspDTI ATGAA 3 cut(s) 17, 74, 1217
TspGWI ACGGA 1 cut(s) 1226
TspRI CASTG 3 cut(s) 212, 1070, 1465
VpaK11BI GGWCC 1 cut(s) 1420
XapI RAATTY 4 cut(s) 675, 860, 1402, 1473
XceI RCATGY 1 cut(s) 1251
XmnI GAANNNNTTC 1 cut(s) 477
XspI CTAG 2 cut(s) 513, 659
ZrmI AGTACT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.