pycom07g13890

Belongs to the DEAD box helicase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
15783743 .. 15788723
4981 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g13890.9

Sequence Viewer

Length: 1521 bp
ATGAACAGTAATAGAGGTAGGTACCCTCCGGGGATCGGAGCTGGGAGAGGCGGCGGCATGAATGCGAACCCTGCATTCCAGTCTCGGCCGCCGCATCAGCAGCAGTATGTACAGAGGAACCTTTTGCCGAACCATCATCACCAGCAGCAGTACTTTCAACAGCAGCAACAACACCAACAGCATCAACAGCAGCAACAACAGCAACAGCAGTGGCTCAGGAGAGGCCAGTTGGGTGGGAGTACAAGTGCTGATTCGGCCGTTGATGAGGTGGAAAAGACCGTGCAGTCGGAAGCTGTTGACCCAAGTTCGCAAGATTGGAAAGCGAGATTAAAGATTCCAGCACCTGATACACGTTTCAGAACAGAGGATGTAACTGCAACAAAAGGAAATGAGTTTGAGGACTATTTTCTGAAACGTGAGCTGCTGATGGGAATATACGAGAAGGGATTTGAAAGACCATCTCCTATTCAGGAAGAAAGTATTCCAATTGCTTTAACCGGTAGTGATATTCTTGCTAGAGCTAAAAATGGAACGGGAAAGACAGCTGCTTTTTGCATCCCTGCTTTGGAAAAAATTGATCAAGATAACAATGTAATACAAGTTGTTATTCTTGTTCCAACTCGTGAGTTAGCTCTTCAAACGTCACAAGTCTGTAAGGAGCTAGGGAAGCATTTACAAATTCAAGTTATGGTTACAACCGGAGGTACCAGCTTAAAGGATGATATCATGCGTTTATATCAACCAGTTCACTTACTTGTTGGAACTCCTGGAAGGATTTTAGATCTTGCAAAGAAAGGTGTTTGCATCTTGAAAGAATGTTCTATGCTTGTTATGGATGAGGCTGATAAACTTTTGTCCCCTGAATTTCAACCTTCAGTAGAGCAGTTGATCGATCTGCGCTTCTTACCTTCACATCGACAGATTTTGATGTTTTCAGCTACATTTCCTGTTACCGTCAAGGACTTTAAGGATAGGTATCTGCAAAAACCTTATGTTATCAATCTTATGGATGAGCTTACTCTAAAGGGTATTACACAATTTTATGCCTTTGTCGAGGAGAGACAGAAAGTCCACTGCCTAAACACCCTTTTCTCTAAGCTTCAAATAAACCAGTCAATCATATTCTGTAATTCTGTGAATCGGGTAGAATTGTTGGCCAAGAAAATAACAGAACTCGGCTATTCGTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGTAACAGAGTATTTCATGACTTCCGTAATGGTGCATGCAGAAATCTTGTTTGTACTGATCTTTTTACAAGAGGAATAGATATTCAAGCTGTTAATGTTGTCATTAACTTTGATTTTCCGAAGAACTCAGAGACATATCTTCACAGGGTTGGTCGATCTGGAAGGTTTGGACACCTTGGTTTAGCTGTGAATTTGATCACCTATGAGGACCGTTTCAACTTGTATAGAATTGAGCAAGAACTTGGCACTGAGATAAAGCAAATTCCTCCCCATATTGATCAGGCAATTTATTGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

507

Amino Acids

57.87

Weight (kDa)

8.55

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 283
Acc65I GGTACC 2 cut(s) 21, 704
AccB1I GGYRCC 2 cut(s) 21, 704
AciI CCGC 4 cut(s) 51, 54, 89, 92
AclWI GGATC 1 cut(s) 41
AcoI YGGCCR 3 cut(s) 86, 255, 1155
AcsI RAATTY 4 cut(s) 678, 863, 1411, 1482
AcuI CTGAAG 1 cut(s) 858
AfaI GTAC 6 cut(s) 23, 111, 152, 241, 706, 1276
AfiI CCNNNNNNNGG 2 cut(s) 35, 565
AflIII ACRYGT 1 cut(s) 350
AgeI ACCGGT 1 cut(s) 497
AgsI TTSAA 9 cut(s) 158, 452, 638, 683, 811, 869, 1103, 1307, 1438
AhdI GACNNNNNGTC 1 cut(s) 1067
AjnI CCWGG 1 cut(s) 766
Alw26I GTCTC 3 cut(s) 87, 1054, 1346
AlwI GGATC 1 cut(s) 41
AlwNI CAGNNNCTG 1 cut(s) 344
AoxI GGCC 4 cut(s) 86, 223, 255, 1155
ApeKI GCWGC 7 cut(s) 100, 145, 163, 190, 421, 545, 1210
ApoI RAATTY 4 cut(s) 678, 863, 1411, 1482
AsiGI ACCGGT 1 cut(s) 497
Asp700I GAANNNNTTC 1 cut(s) 480
Asp718I GGTACC 2 cut(s) 21, 704
AspLEI GCGC 1 cut(s) 900
AspS9I GGNCC 1 cut(s) 1429
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 131, 1411
AvaII GGWCC 1 cut(s) 1429
BalI TGGCCA 1 cut(s) 1157
BanI GGYRCC 2 cut(s) 21, 704
BauI CACGAG 1 cut(s) 621
BbvI GCAGC 7 cut(s) 112, 157, 175, 202, 408, 532, 1197
BccI CCATC 4 cut(s) 141, 421, 466, 1227
BceAI ACGGC 1 cut(s) 242
BcgI CGANNNNNNTGC 2 cut(s) 1202, 1236
BciT130I CCWGG 1 cut(s) 768
BclI TGATCA 3 cut(s) 577, 1416, 1498
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 3 cut(s) 87, 1054, 1346
BfaI CTAG 2 cut(s) 516, 662
BglII AGATCT 1 cut(s) 781
BmcAI AGTACT 1 cut(s) 152
Bme1390I CCNGG 2 cut(s) 30, 768
Bme18I GGWCC 1 cut(s) 1429
BmeRI GACNNNNNGTC 1 cut(s) 1067
BmgT120I GGNCC 1 cut(s) 1429
BmiI GGNNCC 3 cut(s) 23, 119, 706
BmrFI CCNGG 2 cut(s) 30, 768
BmsI GCATC 5 cut(s) 103, 190, 564, 813, 1197
Bpu10I CCTNAGC 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 891
BsaBI GATNNNNATC 1 cut(s) 975
BsaJI CCNNGG 2 cut(s) 29, 1396
BsaWI WCCGGW 2 cut(s) 497, 698
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 565
Bse118I RCCGGY 2 cut(s) 497, 1515
Bse1I ACTGG 4 cut(s) 79, 226, 743, 1111
Bse8I GATNNNNATC 1 cut(s) 975
BseBI CCWGG 1 cut(s) 768
BseCI ATCGAT 1 cut(s) 891
BseDI CCNNGG 2 cut(s) 29, 1396
BseGI GGATG 5 cut(s) 373, 555, 724, 841, 1015
BseJI GATNNNNATC 1 cut(s) 975
BseLI CCNNNNNNNGG 2 cut(s) 35, 565
BseMII CTCAG 3 cut(s) 229, 1362, 1461
BseNI ACTGG 4 cut(s) 79, 226, 743, 1111
BseRI GAGGAG 1 cut(s) 1070
BseX3I CGGCCG 2 cut(s) 86, 255
BseXI GCAGC 7 cut(s) 112, 157, 175, 202, 408, 532, 1197
BseYI CCCAGC 1 cut(s) 41
BsgI GTGCAG 1 cut(s) 302
Bsh1285I CGRYCG 2 cut(s) 89, 258
BshFI GGCC 4 cut(s) 88, 225, 257, 1157
BshNI GGYRCC 2 cut(s) 21, 704
BshTI ACCGGT 1 cut(s) 497
BshVI ATCGAT 1 cut(s) 891
BsiEI CGRYCG 2 cut(s) 89, 258
BsiSI CCGG 4 cut(s) 29, 498, 699, 1516
BslFI GGGAC 1 cut(s) 841
BslI CCNNNNNNNGG 2 cut(s) 35, 565
BsmAI GTCTC 3 cut(s) 87, 1054, 1346
BsmFI GGGAC 1 cut(s) 841
BsmI GAATGC 2 cut(s) 67, 74
BsnI GGCC 4 cut(s) 88, 225, 257, 1157
Bsp1407I TGTACA 1 cut(s) 109
Bsp143I GATC 9 cut(s) 33, 577, 781, 888, 892, 1279, 1376, 1416, 1498
BspACI CCGC 4 cut(s) 51, 54, 89, 92
BspANI GGCC 4 cut(s) 88, 225, 257, 1157
BspCNI CTCAG 3 cut(s) 228, 1361, 1462
BspDI ATCGAT 1 cut(s) 891
BspHI TCATGA 1 cut(s) 1237
BspLI GGNNCC 3 cut(s) 23, 119, 706
BspPI GGATC 1 cut(s) 41
BspQI GCTCTTC 1 cut(s) 639
BspT107I GGYRCC 2 cut(s) 21, 704
BsrFI RCCGGY 2 cut(s) 497, 1515
BsrGI TGTACA 1 cut(s) 109
BsrI ACTGG 4 cut(s) 79, 226, 743, 1111
BssAI RCCGGY 2 cut(s) 497, 1515
BssECI CCNNGG 2 cut(s) 29, 1396
BssMI GATC 9 cut(s) 33, 577, 781, 888, 892, 1279, 1376, 1416, 1498
BssSI CACGAG 1 cut(s) 621
BssT1I CCWWGG 1 cut(s) 1396
Bst2BI CACGAG 1 cut(s) 621
Bst2UI CCWGG 1 cut(s) 768
Bst4CI ACNGT 4 cut(s) 8, 280, 955, 1433
Bst6I CTCTTC 1 cut(s) 639
BstAUI TGTACA 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 1258
BstDEI CTNAG 4 cut(s) 215, 1095, 1348, 1470
BstF5I GGATG 5 cut(s) 373, 555, 724, 841, 1015
BstHHI GCGC 1 cut(s) 900
BstKTI GATC 9 cut(s) 36, 580, 784, 891, 895, 1282, 1379, 1419, 1501
BstMAI GTCTC 3 cut(s) 87, 1054, 1346
BstMBI GATC 9 cut(s) 33, 577, 781, 888, 892, 1279, 1376, 1416, 1498
BstMCI CGRYCG 2 cut(s) 89, 258
BstMWI GCNNNNNNNGC 7 cut(s) 71, 97, 100, 187, 199, 254, 667
BstNI CCWGG 1 cut(s) 768
BstNSI RCATGY 1 cut(s) 1260
BstSCI CCNGG 2 cut(s) 28, 766
BstV1I GCAGC 7 cut(s) 112, 157, 175, 202, 408, 532, 1197
BstX2I RGATCY 1 cut(s) 781
BstXI CCANNNNNNTGG 1 cut(s) 233
BstYI RGATCY 1 cut(s) 781
BstZI CGGCCG 2 cut(s) 86, 255
Bsu15I ATCGAT 1 cut(s) 891
BsuRI GGCC 4 cut(s) 88, 225, 257, 1157
BsuTUI ATCGAT 1 cut(s) 891
BtsCI GGATG 5 cut(s) 373, 555, 724, 841, 1015
BtsI GCAGTG 2 cut(s) 215, 1072
BtsIMutI CAGTG 3 cut(s) 215, 1072, 1467
Cac8I GCNNGC 1 cut(s) 1258
CaiI CAGNNNCTG 1 cut(s) 344
CciI TCATGA 1 cut(s) 1237
CfoI GCGC 1 cut(s) 900
Cfr10I RCCGGY 2 cut(s) 497, 1515
Cfr13I GGNCC 1 cut(s) 1429
ClaI ATCGAT 1 cut(s) 891
Csp6I GTAC 6 cut(s) 22, 110, 151, 240, 705, 1275
CspAI ACCGGT 1 cut(s) 497
CspCI CAANNNNNGTGG 2 cut(s) 191, 226
CviAII CATG 5 cut(s) 58, 727, 1199, 1238, 1257
CviQI GTAC 6 cut(s) 22, 110, 151, 240, 705, 1275
DdeI CTNAG 4 cut(s) 215, 1095, 1348, 1470
DpnI GATC 9 cut(s) 35, 579, 783, 890, 894, 1281, 1378, 1418, 1500
DpnII GATC 9 cut(s) 33, 577, 781, 888, 892, 1279, 1376, 1416, 1498
DrdI GACNNNNNNGTC 1 cut(s) 283
DriI GACNNNNNGTC 1 cut(s) 1067
DseDI GACNNNNNNGTC 1 cut(s) 283
EaeI YGGCCR 3 cut(s) 86, 255, 1155
EagI CGGCCG 2 cut(s) 86, 255
Eam1104I CTCTTC 1 cut(s) 639
Eam1105I GACNNNNNGTC 1 cut(s) 1067
EarI CTCTTC 1 cut(s) 639
EclXI CGGCCG 2 cut(s) 86, 255
Eco130I CCWWGG 1 cut(s) 1396
Eco32I GATATC 1 cut(s) 724
Eco47I GGWCC 1 cut(s) 1429
Eco52I CGGCCG 2 cut(s) 86, 255
Eco57I CTGAAG 1 cut(s) 858
EcoRII CCWGG 1 cut(s) 766
EcoRV GATATC 1 cut(s) 724
EcoT14I CCWWGG 1 cut(s) 1396
ErhI CCWWGG 1 cut(s) 1396
FaeI CATG 5 cut(s) 61, 730, 1202, 1241, 1260
FaqI GGGAC 1 cut(s) 841
FatI CATG 5 cut(s) 57, 726, 1198, 1237, 1256
FbaI TGATCA 3 cut(s) 577, 1416, 1498
FokI GGATG 5 cut(s) 380, 542, 731, 848, 1022
FspBI CTAG 2 cut(s) 516, 662
GlaI GCGC 1 cut(s) 899
GsaI CCCAGC 1 cut(s) 45
HaeIII GGCC 4 cut(s) 88, 225, 257, 1157
HapII CCGG 4 cut(s) 29, 498, 699, 1516
HhaI GCGC 1 cut(s) 900
Hin1II CATG 5 cut(s) 61, 730, 1202, 1241, 1260
Hin6I GCGC 1 cut(s) 898
HinP1I GCGC 1 cut(s) 898
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HindIII AAGCTT 1 cut(s) 1097
HinfI GANTC 3 cut(s) 251, 334, 1138
HpaII CCGG 4 cut(s) 29, 498, 699, 1516
HphI GGTGA 2 cut(s) 131, 1411
Hpy166II GTNNAC 3 cut(s) 298, 748, 1072
Hpy188I TCNGA 6 cut(s) 38, 289, 359, 411, 1341, 1351
Hpy188III TCNNGA 7 cut(s) 217, 470, 581, 623, 808, 1238, 1380
Hpy8I GTNNAC 3 cut(s) 298, 748, 1072
HpyAV CCTTC 5 cut(s) 436, 765, 882, 918, 1377
HpyCH4III ACNGT 4 cut(s) 8, 280, 955, 1433
HpyCH4IV ACGT 3 cut(s) 352, 415, 641
HpyF10VI GCNNNNNNNGC 7 cut(s) 71, 97, 100, 187, 199, 254, 667
HpyF3I CTNAG 4 cut(s) 215, 1095, 1348, 1470
HpySE526I ACGT 3 cut(s) 352, 415, 641
Hsp92II CATG 5 cut(s) 61, 730, 1202, 1241, 1260
HspAI GCGC 1 cut(s) 898
KpnI GGTACC 2 cut(s) 25, 708
Ksp22I TGATCA 3 cut(s) 577, 1416, 1498
Kzo9I GATC 9 cut(s) 33, 577, 781, 888, 892, 1279, 1376, 1416, 1498
LguI GCTCTTC 1 cut(s) 639
LmnI GCTCC 2 cut(s) 38, 658
Lsp1109I GCAGC 7 cut(s) 112, 157, 175, 202, 408, 532, 1197
LweI GCATC 5 cut(s) 103, 190, 564, 813, 1197
MaeI CTAG 2 cut(s) 516, 662
MaeII ACGT 3 cut(s) 352, 415, 641
MaeIII GTNAC 5 cut(s) 370, 642, 691, 949, 1223
MalI GATC 9 cut(s) 35, 579, 783, 890, 894, 1281, 1378, 1418, 1500
MboI GATC 9 cut(s) 33, 577, 781, 888, 892, 1279, 1376, 1416, 1498
MboII GAAGA 4 cut(s) 485, 626, 1352, 1354
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 1 cut(s) 781
MlsI TGGCCA 1 cut(s) 1157
MluNI TGGCCA 1 cut(s) 1157
MmeI TCCRAC 3 cut(s) 267, 641, 739
Mox20I TGGCCA 1 cut(s) 1157
MroXI GAANNNNTTC 1 cut(s) 480
MscI TGGCCA 1 cut(s) 1157
MseI TTAA 6 cut(s) 329, 494, 713, 966, 1314, 1326
Msp20I TGGCCA 1 cut(s) 1157
MspA1I CMGCKG 1 cut(s) 545
MspI CCGG 4 cut(s) 29, 498, 699, 1516
MspR9I CCNGG 2 cut(s) 30, 768
MunI CAATTG 1 cut(s) 486
Mva1269I GAATGC 2 cut(s) 67, 74
MvaI CCWGG 1 cut(s) 768
MwoI GCNNNNNNNGC 7 cut(s) 71, 97, 100, 187, 199, 254, 667
NciI CCSGG 1 cut(s) 30
NdeII GATC 9 cut(s) 33, 577, 781, 888, 892, 1279, 1376, 1416, 1498
NlaIII CATG 5 cut(s) 61, 730, 1202, 1241, 1260
NlaIV GGNNCC 3 cut(s) 23, 119, 706
NmeAIII GCCGAG 2 cut(s) 64, 1155
NmuCI GTSAC 1 cut(s) 642
NspI RCATGY 1 cut(s) 1260
PaeI GCATGC 1 cut(s) 1260
PagI TCATGA 1 cut(s) 1237
PciSI GCTCTTC 1 cut(s) 639
PctI GAATGC 2 cut(s) 67, 74
PdmI GAANNNNTTC 1 cut(s) 480
PfeI GAWTC 3 cut(s) 251, 334, 1138
PfoI TCCNGGA 1 cut(s) 766
PinAI ACCGGT 1 cut(s) 497
Psp6I CCWGG 1 cut(s) 766
PspFI CCCAGC 1 cut(s) 41
PspGI CCWGG 1 cut(s) 766
PspN4I GGNNCC 3 cut(s) 23, 119, 706
PspPI GGNCC 1 cut(s) 1429
PstNI CAGNNNCTG 1 cut(s) 344
PsuI RGATCY 1 cut(s) 781
PvuII CAGCTG 1 cut(s) 545
RsaI GTAC 6 cut(s) 23, 111, 152, 241, 706, 1276
RsaNI GTAC 6 cut(s) 22, 110, 151, 240, 705, 1275
SapI GCTCTTC 1 cut(s) 639
SaqAI TTAA 6 cut(s) 329, 494, 713, 966, 1314, 1326
Sau3AI GATC 9 cut(s) 33, 577, 781, 888, 892, 1279, 1376, 1416, 1498
Sau96I GGNCC 1 cut(s) 1429
ScaI AGTACT 1 cut(s) 152
ScrFI CCNGG 2 cut(s) 30, 768
SfaNI GCATC 5 cut(s) 103, 190, 564, 813, 1197
SinI GGWCC 1 cut(s) 1429
SphI GCATGC 1 cut(s) 1260
SsiI CCGC 4 cut(s) 51, 54, 89, 92
SspMI CTAG 2 cut(s) 516, 662
StyD4I CCNGG 2 cut(s) 28, 766
StyI CCWWGG 1 cut(s) 1396
TaaI ACNGT 4 cut(s) 8, 280, 955, 1433
TaiI ACGT 3 cut(s) 355, 418, 644
TaqI TCGA 4 cut(s) 891, 916, 1053, 1375
TatI WGTACW 4 cut(s) 109, 150, 239, 1274
TauI GCSGC 4 cut(s) 54, 57, 91, 94
TfiI GAWTC 3 cut(s) 251, 334, 1138
Tru1I TTAA 6 cut(s) 329, 494, 713, 966, 1314, 1326
Tru9I TTAA 6 cut(s) 329, 494, 713, 966, 1314, 1326
TscAI CASTG 3 cut(s) 215, 1079, 1474
TseFI GTSAC 1 cut(s) 642
TseI GCWGC 7 cut(s) 100, 145, 163, 190, 421, 545, 1210
Tsp45I GTSAC 1 cut(s) 642
TspDTI ATGAA 3 cut(s) 17, 74, 1226
TspGWI ACGGA 1 cut(s) 1235
TspRI CASTG 3 cut(s) 215, 1079, 1474
VpaK11BI GGWCC 1 cut(s) 1429
XapI RAATTY 4 cut(s) 678, 863, 1411, 1482
XceI RCATGY 1 cut(s) 1260
XmnI GAANNNNTTC 1 cut(s) 480
XspI CTAG 2 cut(s) 516, 662
ZrmI AGTACT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.