Rmu_sc0001763.1_g000011

Belongs to the DEAD box helicase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001763.1
Physical Location & Seq
Forward (+)
40003 .. 45834
5832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001763.1_g000011.1.cds

Sequence Viewer

Length: 1647 bp
atgaacaacaacagagggaggtacccgccggggatcggagccggtcgcggcggcggcatgaatgcgaaccctccgttccagtctcggccgccgcatcagcagcaatatgtacagaggaatcttttgccgaaccaccagcagcagcagcagtactttcagcaacaacagcaccatcaacagcaacagcagcagcaccaccagcagcaacagtggctcaggagaggccagttgggtggtagcaccagtgccgattccgccgtcgacgaggttgagaagactgtgcagtccgaggccgtcgatccaagttcgcaagattggaaggcaaggttaaagattcctccagctgatacgcgcttcagaacagaggatgttactgcaactaaaggaaatgagtttgaggactactttctgaaacgtgagctactgatgggaatatatgagaagggatttgaaaggccatctcctattcaggaagaaagtataccaattgctttaactggtagtgatattcttgctagagctaaaaatggaacggggaaaacggctgcattttgcatccctgctttggaaaaaattgatcaagataacaatgtaattcaagttgttatactggttccaactcgtgagttggcccttcaaacatcacaagtctgtaaggagctagggaagcatttgcaaatacaagttatggttactactggaggtaccagcttaaaggatgatatcatgcgtttataccaaccggttcacttactcgttggaactcctggaagaattttagatctttcaaagaaaggtgtttgcatcttgaaagactgttctatgcttgttatggatgaggctgataaacttttgtctccggagtttcaaccttcagtggagcagcttatccgcttcttgccttcaaatcggcaaattttgatgttttcagctacatttcctgtcactgttaaggacttcaaagaaagatatctgcacaagccttatgttatcaaccttatggatgagcttactctaaagggtatcacacagttctatgcttttgtcgaggagagacagaaagtccactgcctaaacacacttttctccaagcttcaaataaaccagtcaatcatattctgcaattctgtgaatcgggtggagttattggccaagaaaattacagaactgggctattcatgcttttatattcatgcaaagatgctacaagaccatcgtaacagagtattccatgacttccgtaatggtgcatgcagaaatcttgtttgcactgatctatttacaagaggaatagatattcaagctgtcaatgttgtcattaactttgattttccaaagaactcagagacatatctgcacagggtgggtcgatctggaaggaccgcttcaacttgtatagaattgagcaagaacttggcactgagatcaagcaaattcccccacatattgatcaggcaatttattgccggtgaccagtggtggaaatcttgctatgcagtcaatgatggggtagaggagctccctgttcaagaaggtataacactgcgatgggaggaatactattcggatttaggtgctgttggacagctttggttgatgcattgtcccgtgaatgcttttgttactgctgaattttcatggccgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

548

Amino Acids

62.57

Weight (kDa)

8.34

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 283
Acc65I GGTACC 2 cut(s) 21, 704
AccB1I GGYRCC 2 cut(s) 21, 704
AccI GTMKAC 2 cut(s) 261, 481
AccII CGCG 2 cut(s) 48, 352
AccIII TCCGGA 1 cut(s) 859
AciI CCGC 9 cut(s) 26, 48, 51, 54, 89, 92, 255, 892, 1383
AclWI GGATC 2 cut(s) 41, 293
AcoI YGGCCR 3 cut(s) 86, 1149, 1640
AcsI RAATTY 4 cut(s) 774, 915, 1433, 1631
AcuI CTGAAG 2 cut(s) 340, 858
AdeI CACNNNGTG 1 cut(s) 1363
AfaI GTAC 4 cut(s) 23, 111, 152, 706
AfiI CCNNNNNNNGG 2 cut(s) 35, 565
AgeI ACCGGT 1 cut(s) 742
AhdI GACNNNNNGTC 1 cut(s) 1061
AjnI CCWGG 1 cut(s) 766
Alw21I GWGCWC 1 cut(s) 1521
Alw26I GTCTC 4 cut(s) 87, 861, 1048, 1340
AlwI GGATC 2 cut(s) 41, 293
Aor13HI TCCGGA 1 cut(s) 859
AoxI GGCC 7 cut(s) 86, 223, 291, 455, 630, 1149, 1640
ApeKI GCWGC 9 cut(s) 100, 139, 142, 145, 187, 190, 202, 545, 883
ApoI RAATTY 4 cut(s) 774, 915, 1433, 1631
AsiGI ACCGGT 1 cut(s) 742
Asp718I GGTACC 2 cut(s) 21, 704
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 2 cut(s) 631, 1380
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 1 cut(s) 1481
AvaII GGWCC 1 cut(s) 1380
BalI TGGCCA 1 cut(s) 1151
BanI GGYRCC 2 cut(s) 21, 704
BanII GRGCYC 1 cut(s) 1521
BarI GAAGNNNNNNTAC 2 cut(s) 465, 497
BauI CACGAG 1 cut(s) 621
BbsI GAAGAC 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 1521
BbvI GCAGC 9 cut(s) 112, 151, 154, 157, 199, 202, 214, 532, 895
BccI CCATC 6 cut(s) 180, 421, 466, 1221, 1499, 1542
BceAI ACGGC 4 cut(s) 242, 278, 558, 1627
BciT130I CCWGG 1 cut(s) 768
BclI TGATCA 2 cut(s) 577, 1449
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 4 cut(s) 87, 861, 1048, 1340
BfaI CTAG 2 cut(s) 516, 662
BglII AGATCT 1 cut(s) 781
BmcAI AGTACT 1 cut(s) 152
Bme1390I CCNGG 2 cut(s) 30, 768
Bme18I GGWCC 1 cut(s) 1380
BmeRI GACNNNNNGTC 1 cut(s) 1061
BmgT120I GGNCC 2 cut(s) 631, 1380
BmiI GGNNCC 4 cut(s) 23, 40, 615, 706
BmrFI CCNGG 2 cut(s) 30, 768
BmrI ACTGGG 1 cut(s) 1178
BmsI GCATC 5 cut(s) 103, 564, 813, 1191, 1587
BmuI ACTGGG 1 cut(s) 1178
BpiI GAAGAC 1 cut(s) 281
BpmI CTGGAG 2 cut(s) 324, 720
Bpu10I CCTNAGC 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 29, 288
BsaWI WCCGGW 2 cut(s) 742, 859
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 565
Bse118I RCCGGY 3 cut(s) 41, 742, 1466
Bse1I ACTGG 9 cut(s) 79, 226, 243, 502, 615, 703, 1105, 1173, 1474
BseAI TCCGGA 1 cut(s) 859
BseBI CCWGG 1 cut(s) 768
BseDI CCNNGG 2 cut(s) 29, 288
BseGI GGATG 5 cut(s) 373, 555, 724, 841, 1009
BseLI CCNNNNNNNGG 2 cut(s) 35, 565
BseMII CTCAG 3 cut(s) 229, 1356, 1412
BseNI ACTGG 9 cut(s) 79, 226, 243, 502, 615, 703, 1105, 1173, 1474
BseRI GAGGAG 2 cut(s) 1064, 1529
BseX3I CGGCCG 1 cut(s) 86
BseXI GCAGC 9 cut(s) 112, 151, 154, 157, 199, 202, 214, 532, 895
BsgI GTGCAG 3 cut(s) 302, 959, 1340
Bsh1236I CGCG 2 cut(s) 48, 352
Bsh1285I CGRYCG 2 cut(s) 46, 89
BshFI GGCC 7 cut(s) 88, 225, 293, 457, 632, 1151, 1642
BshNI GGYRCC 2 cut(s) 21, 704
BshTI ACCGGT 1 cut(s) 742
BsiEI CGRYCG 2 cut(s) 46, 89
BsiHKAI GWGCWC 1 cut(s) 1521
BsiSI CCGG 5 cut(s) 29, 42, 743, 860, 1467
BslFI GGGAC 1 cut(s) 1590
BslI CCNNNNNNNGG 2 cut(s) 35, 565
BsmAI GTCTC 4 cut(s) 87, 861, 1048, 1340
BsmFI GGGAC 1 cut(s) 1590
BsmI GAATGC 2 cut(s) 67, 1618
BsnI GGCC 7 cut(s) 88, 225, 293, 457, 632, 1151, 1642
Bsp1286I GDGCHC 1 cut(s) 1521
Bsp13I TCCGGA 1 cut(s) 859
Bsp1407I TGTACA 1 cut(s) 109
Bsp143I GATC 8 cut(s) 33, 298, 577, 781, 1273, 1370, 1424, 1449
BspACI CCGC 9 cut(s) 26, 48, 51, 54, 89, 92, 255, 892, 1383
BspANI GGCC 7 cut(s) 88, 225, 293, 457, 632, 1151, 1642
BspCNI CTCAG 3 cut(s) 228, 1355, 1413
BspEI TCCGGA 1 cut(s) 859
BspFNI CGCG 2 cut(s) 48, 352
BspLI GGNNCC 4 cut(s) 23, 40, 615, 706
BspPI GGATC 2 cut(s) 41, 293
BspT107I GGYRCC 2 cut(s) 21, 704
BsrFI RCCGGY 3 cut(s) 41, 742, 1466
BsrGI TGTACA 1 cut(s) 109
BsrI ACTGG 9 cut(s) 79, 226, 243, 502, 615, 703, 1105, 1173, 1474
BssAI RCCGGY 3 cut(s) 41, 742, 1466
BssECI CCNNGG 2 cut(s) 29, 288
BssMI GATC 8 cut(s) 33, 298, 577, 781, 1273, 1370, 1424, 1449
BssNAI GTATAC 1 cut(s) 482
BssSI CACGAG 1 cut(s) 621
Bst1107I GTATAC 1 cut(s) 482
Bst2BI CACGAG 1 cut(s) 621
Bst2UI CCWGG 1 cut(s) 768
Bst4CI ACNGT 5 cut(s) 210, 280, 818, 949, 1032
BstAUI TGTACA 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 1252
BstDEI CTNAG 3 cut(s) 215, 1342, 1421
BstEII GGTNACC 1 cut(s) 1469
BstF5I GGATG 5 cut(s) 373, 555, 724, 841, 1009
BstFNI CGCG 2 cut(s) 48, 352
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 8 cut(s) 36, 301, 580, 784, 1276, 1373, 1427, 1452
BstMAI GTCTC 4 cut(s) 87, 861, 1048, 1340
BstMBI GATC 8 cut(s) 33, 298, 577, 781, 1273, 1370, 1424, 1449
BstMCI CGRYCG 2 cut(s) 46, 89
BstNI CCWGG 1 cut(s) 768
BstNSI RCATGY 1 cut(s) 1254
BstPI GGTNACC 1 cut(s) 1469
BstSCI CCNGG 2 cut(s) 28, 766
BstUI CGCG 2 cut(s) 48, 352
BstV1I GCAGC 9 cut(s) 112, 151, 154, 157, 199, 202, 214, 532, 895
BstV2I GAAGAC 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 781
BstXI CCANNNNNNTGG 1 cut(s) 233
BstYI RGATCY 1 cut(s) 781
BstZ17I GTATAC 1 cut(s) 482
BstZI CGGCCG 1 cut(s) 86
BsuRI GGCC 7 cut(s) 88, 225, 293, 457, 632, 1151, 1642
BtgZI GCGATG 1 cut(s) 1561
BtsCI GGATG 5 cut(s) 373, 555, 724, 841, 1009
BtsI GCAGTG 2 cut(s) 1066, 1541
BtsIMutI CAGTG 9 cut(s) 215, 250, 882, 945, 1066, 1269, 1418, 1481, 1541
Cac8I GCNNGC 1 cut(s) 1252
CfoI GCGC 1 cut(s) 354
Cfr10I RCCGGY 3 cut(s) 41, 742, 1466
Cfr13I GGNCC 2 cut(s) 631, 1380
Csp6I GTAC 4 cut(s) 22, 110, 151, 705
CspAI ACCGGT 1 cut(s) 742
CviAII CATG 7 cut(s) 58, 727, 1179, 1193, 1232, 1251, 1638
CviQI GTAC 4 cut(s) 22, 110, 151, 705
DdeI CTNAG 3 cut(s) 215, 1342, 1421
DpnI GATC 8 cut(s) 35, 300, 579, 783, 1275, 1372, 1426, 1451
DpnII GATC 8 cut(s) 33, 298, 577, 781, 1273, 1370, 1424, 1449
DraIII CACNNNGTG 1 cut(s) 1363
DrdI GACNNNNNNGTC 1 cut(s) 283
DriI GACNNNNNGTC 1 cut(s) 1061
DseDI GACNNNNNNGTC 1 cut(s) 283
EaeI YGGCCR 3 cut(s) 86, 1149, 1640
EagI CGGCCG 1 cut(s) 86
Eam1105I GACNNNNNGTC 1 cut(s) 1061
EciI GGCGGA 1 cut(s) 244
Ecl136II GAGCTC 1 cut(s) 1519
EclXI CGGCCG 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 1521
Eco32I GATATC 2 cut(s) 724, 971
Eco47I GGWCC 1 cut(s) 1380
Eco52I CGGCCG 1 cut(s) 86
Eco53kI GAGCTC 1 cut(s) 1519
Eco57I CTGAAG 2 cut(s) 340, 858
Eco91I GGTNACC 1 cut(s) 1469
EcoICRI GAGCTC 1 cut(s) 1519
EcoO65I GGTNACC 1 cut(s) 1469
EcoRII CCWGG 1 cut(s) 766
EcoRV GATATC 2 cut(s) 724, 971
EcoT22I ATGCAT 1 cut(s) 1602
EcoT38I GRGCYC 1 cut(s) 1521
FaeI CATG 7 cut(s) 61, 730, 1182, 1196, 1235, 1254, 1641
FalI AAGNNNNNCTT 2 cut(s) 1369, 1401
FaqI GGGAC 1 cut(s) 1590
FatI CATG 7 cut(s) 57, 726, 1178, 1192, 1231, 1250, 1637
FauI CCCGC 1 cut(s) 33
FbaI TGATCA 2 cut(s) 577, 1449
FblI GTMKAC 2 cut(s) 261, 481
FokI GGATG 5 cut(s) 380, 542, 731, 848, 1016
FriOI GRGCYC 1 cut(s) 1521
FspBI CTAG 2 cut(s) 516, 662
GlaI GCGC 1 cut(s) 353
GsuI CTGGAG 2 cut(s) 324, 720
HaeIII GGCC 7 cut(s) 88, 225, 293, 457, 632, 1151, 1642
HapII CCGG 5 cut(s) 29, 42, 743, 860, 1467
HhaI GCGC 1 cut(s) 354
Hin1II CATG 7 cut(s) 61, 730, 1182, 1196, 1235, 1254, 1641
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HindIII AAGCTT 1 cut(s) 1091
HinfI GANTC 4 cut(s) 118, 251, 334, 1132
HpaII CCGG 5 cut(s) 29, 42, 743, 860, 1467
HphI GGTGA 1 cut(s) 1481
Hpy166II GTNNAC 4 cut(s) 262, 482, 748, 1066
Hpy188I TCNGA 6 cut(s) 38, 289, 359, 411, 1345, 1567
Hpy188III TCNNGA 8 cut(s) 217, 470, 581, 623, 808, 860, 1374, 1529
Hpy8I GTNNAC 4 cut(s) 262, 482, 748, 1066
Hpy99I CGWCG 3 cut(s) 263, 266, 299
HpyAV CCTTC 7 cut(s) 313, 436, 644, 882, 912, 1371, 1526
HpyCH4III ACNGT 5 cut(s) 210, 280, 818, 949, 1032
HpyCH4IV ACGT 1 cut(s) 415
HpyF3I CTNAG 3 cut(s) 215, 1342, 1421
HpySE526I ACGT 1 cut(s) 415
Hsp92II CATG 7 cut(s) 61, 730, 1182, 1196, 1235, 1254, 1641
HspAI GCGC 1 cut(s) 352
Kpn2I TCCGGA 1 cut(s) 859
KpnI GGTACC 2 cut(s) 25, 708
Ksp22I TGATCA 2 cut(s) 577, 1449
Kzo9I GATC 8 cut(s) 33, 298, 577, 781, 1273, 1370, 1424, 1449
LmnI GCTCC 5 cut(s) 38, 658, 880, 1516, 1524
Lsp1109I GCAGC 9 cut(s) 112, 151, 154, 157, 199, 202, 214, 532, 895
LweI GCATC 5 cut(s) 103, 564, 813, 1191, 1587
MaeI CTAG 2 cut(s) 516, 662
MaeII ACGT 1 cut(s) 415
MaeIII GTNAC 6 cut(s) 370, 691, 943, 1217, 1469, 1621
MalI GATC 8 cut(s) 35, 300, 579, 783, 1275, 1372, 1426, 1451
MboI GATC 8 cut(s) 33, 298, 577, 781, 1273, 1370, 1424, 1449
MboII GAAGA 3 cut(s) 286, 485, 783
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 1 cut(s) 781
MhlI GDGCHC 1 cut(s) 1521
MlsI TGGCCA 1 cut(s) 1151
MluNI TGGCCA 1 cut(s) 1151
MmeI TCCRAC 3 cut(s) 641, 739, 1561
Mox20I TGGCCA 1 cut(s) 1151
Mph1103I ATGCAT 1 cut(s) 1602
MroI TCCGGA 1 cut(s) 859
MscI TGGCCA 1 cut(s) 1151
MseI TTAA 5 cut(s) 329, 494, 713, 951, 1320
MslI CAYNNNNRTG 2 cut(s) 1546, 1642
Msp20I TGGCCA 1 cut(s) 1151
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 5 cut(s) 29, 42, 743, 860, 1467
MspR9I CCNGG 2 cut(s) 30, 768
MunI CAATTG 1 cut(s) 486
Mva1269I GAATGC 2 cut(s) 67, 1618
MvaI CCWGG 1 cut(s) 768
MvnI CGCG 2 cut(s) 48, 352
NciI CCSGG 1 cut(s) 30
NdeII GATC 8 cut(s) 33, 298, 577, 781, 1273, 1370, 1424, 1449
NlaIII CATG 7 cut(s) 61, 730, 1182, 1196, 1235, 1254, 1641
NlaIV GGNNCC 4 cut(s) 23, 40, 615, 706
NmeAIII GCCGAG 1 cut(s) 64
NmuCI GTSAC 2 cut(s) 943, 1469
NsiI ATGCAT 1 cut(s) 1602
NspI RCATGY 1 cut(s) 1254
PaeI GCATGC 1 cut(s) 1254
PctI GAATGC 2 cut(s) 67, 1618
PfeI GAWTC 4 cut(s) 118, 251, 334, 1132
PfoI TCCNGGA 1 cut(s) 766
PinAI ACCGGT 1 cut(s) 742
Psp124BI GAGCTC 1 cut(s) 1521
Psp6I CCWGG 1 cut(s) 766
PspEI GGTNACC 1 cut(s) 1469
PspGI CCWGG 1 cut(s) 766
PspN4I GGNNCC 4 cut(s) 23, 40, 615, 706
PspPI GGNCC 2 cut(s) 631, 1380
PsuI RGATCY 1 cut(s) 781
PvuII CAGCTG 1 cut(s) 344
RsaI GTAC 4 cut(s) 23, 111, 152, 706
RsaNI GTAC 4 cut(s) 22, 110, 151, 705
RseI CAYNNNNRTG 2 cut(s) 1546, 1642
SacI GAGCTC 1 cut(s) 1521
SalI GTCGAC 1 cut(s) 260
SaqAI TTAA 5 cut(s) 329, 494, 713, 951, 1320
Sau3AI GATC 8 cut(s) 33, 298, 577, 781, 1273, 1370, 1424, 1449
Sau96I GGNCC 2 cut(s) 631, 1380
ScaI AGTACT 1 cut(s) 152
ScrFI CCNGG 2 cut(s) 30, 768
SduI GDGCHC 1 cut(s) 1521
SfaNI GCATC 5 cut(s) 103, 564, 813, 1191, 1587
SgrDI CGTCGACG 1 cut(s) 260
SinI GGWCC 1 cut(s) 1380
SmiMI CAYNNNNRTG 2 cut(s) 1546, 1642
SphI GCATGC 1 cut(s) 1254
SsiI CCGC 9 cut(s) 26, 48, 51, 54, 89, 92, 255, 892, 1383
SspMI CTAG 2 cut(s) 516, 662
SstI GAGCTC 1 cut(s) 1521
StyD4I CCNGG 2 cut(s) 28, 766
TaaI ACNGT 5 cut(s) 210, 280, 818, 949, 1032
TaiI ACGT 1 cut(s) 418
TaqI TCGA 4 cut(s) 261, 297, 1047, 1369
TatI WGTACW 2 cut(s) 109, 150
TauI GCSGC 5 cut(s) 51, 54, 57, 91, 94
TfiI GAWTC 4 cut(s) 118, 251, 334, 1132
Tru1I TTAA 5 cut(s) 329, 494, 713, 951, 1320
Tru9I TTAA 5 cut(s) 329, 494, 713, 951, 1320
TscAI CASTG 9 cut(s) 215, 250, 882, 952, 1073, 1276, 1425, 1481, 1548
TseFI GTSAC 2 cut(s) 943, 1469
TseI GCWGC 9 cut(s) 100, 139, 142, 145, 187, 190, 202, 545, 883
Tsp45I GTSAC 2 cut(s) 943, 1469
TspDTI ATGAA 5 cut(s) 17, 74, 1167, 1181, 1626
TspGWI ACGGA 2 cut(s) 63, 1229
TspRI CASTG 9 cut(s) 215, 250, 882, 952, 1073, 1276, 1425, 1481, 1548
VpaK11BI GGWCC 1 cut(s) 1380
XapI RAATTY 4 cut(s) 774, 915, 1433, 1631
XceI RCATGY 1 cut(s) 1254
XmiI GTMKAC 2 cut(s) 261, 481
XspI CTAG 2 cut(s) 516, 662
ZrmI AGTACT 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 1602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.