AT3G61270

downstream target of AGL15 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004904
Physical Location & Seq
Forward (+)
22678034 .. 22680509
2476 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61270.1

Sequence Viewer

Length: 1497 bp
ATGAAGATGAATAACAACGACGGCCAACATAATAAAACGGTGACATTTCCTCGAAAAAGCATCGTGAAGGCTACTGTTTTCATCGTCGTTCTATTCATTTCAGCTGCTATCTTAGACTTACTGGGCTATCTCGATTTCAATGCTTTTGCAGGTTTAAAGCTAACAACAAAGACAAAAGAACCAAATCCTTACGGATGCGACTTCGTACAGAACCAATCAAGTCAAACTCCTATCTCACAAAACCGCAAATCGAGATTAAACCCCAACAACAGTTCAAAATCATCCACGTGTCCTTCTTATTTCCGTTGGATCCATGAAGATCTACGGCCATGGAAACAAACGGGGATAACTAGAGGGATGATCGAAGAAGCGAGTAGAACGGCGCATTTTAGATTGGTGATCCGTAACGGGAAGGCGTACGTTAAGAGATATAAGAAGTCAATACAAACAAGAGATGAATTTACTCTGTGGGGAATCTTACAGTTGTTACGGTGGTACCCTGGTAAATTACCTGATCTCGAGCTAATGTTCGACGCTGATGATCGTCCCGTCGTCCGATCAGTTGACTTTATTGGTCAACAGAAGGAACCACCTCCAGTTTTCCGTTACTGTTCAGATGACGCAAGCTTGGACATTGTCTTCCCTGATTGGTCCTTTTGGGGCTGGGCTGAAGTGAACGTAAAACCATGGGGGAAATCGTTGGAGGCAATAAAAGAAGGGAACAGTATGACGCAATGGAAGGACCGCGTGGCGTACGCTTATTGGAGAGGTAATCCTTATGTTGATCCTGGAAGAGGAGATCTTCTCAAGTGTAATGCTACAGAACATGAAGAGTGGAATACTCGTCTCTATATTCAGGATTGGGATAAAGAAACAAAAGAAGGATTCAAGAACTCAAATCTAGAGAACCAGTGCACTCATAGATACAAGATATATATAGAAGGATGGGCATGGTCGGTTAGCGAGAAATACATAATGGCATGTGACTCAATGACATTATATGTAAAACCAAGATTCTACGATTTCTACATACGAGGAATGATGCCATTACAACATTATTGGCCAATCAGAGACGATTCCAAGTGTACTTCTCTCAAATTCGCCGTACATTGGGGCAATACACACGAGGACAAGGCTCGTGAGATAGGAGAGGTAGGAAGTAGATTTATAAGAGAGGAGGTGAATATGCAGTATGTGTATGACTATATGTTTCATTTACTCAAAGAGTATGCAACACTCTTGAAATTTAAGCCGGAGATTCCGTTAGATGCAGAGGAGATCACGCCGGATAGTATGGGGTGTCCCGCGACGGAAAGGTGGAGAGATTTTAAGGCGGAGTCAATGATTATATCTCCTAGTGAAGAGTCTCCTTGTGAGATGCTTCCTCCTTATGATCCTCTAGCTTTAAAAGAGGTTCTTGAGAGAAAAGCTAATTTAACTCGTCAGGTTGAGTTGTGGGAAAACCAATACTTTCAAAATCTTACCAACAAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
Glyco_transf_90

Protein Analysis

498

Amino Acids

58.52

Weight (kDa)

7.54

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_90 PF05686 93 - 487 5.8e-184 Glycosyl transferase family 90
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1169
Acc36I ACCTGC 1 cut(s) 140
Acc65I GGTACC 1 cut(s) 495
AccB1I GGYRCC 1 cut(s) 495
AccII CGCG 2 cut(s) 747, 1307
AciI CCGC 4 cut(s) 244, 745, 1305, 1334
AclWI GGATC 5 cut(s) 304, 317, 394, 779, 1388
AcoI YGGCCR 3 cut(s) 22, 326, 1061
AcsI RAATTY 3 cut(s) 458, 1097, 1244
AcuI CTGAAG 1 cut(s) 690
AcvI CACGTG 1 cut(s) 288
AfaI GTAC 6 cut(s) 207, 419, 497, 755, 1087, 1107
AfiI CCNNNNNNNGG 2 cut(s) 794, 1110
AflIII ACRYGT 1 cut(s) 287
AgsI TTSAA 5 cut(s) 139, 276, 889, 1243, 1475
AjnI CCWGG 2 cut(s) 499, 787
AluBI AGCT 6 cut(s) 104, 160, 523, 627, 1403, 1430
AluI AGCT 6 cut(s) 104, 160, 523, 627, 1403, 1430
Alw21I GWGCWC 1 cut(s) 917
Alw26I GTCTC 3 cut(s) 851, 1065, 1371
Alw44I GTGCAC 1 cut(s) 913
AlwI GGATC 5 cut(s) 304, 317, 394, 779, 1388
Ama87I CYCGRG 1 cut(s) 518
AoxI GGCC 3 cut(s) 22, 326, 1061
ApaLI GTGCAC 1 cut(s) 913
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 3 cut(s) 458, 1097, 1244
Asp718I GGTACC 1 cut(s) 495
AspLEI GCGC 1 cut(s) 385
AspS9I GGNCC 2 cut(s) 651, 742
AsuHPI GGTGA 3 cut(s) 52, 409, 1192
AvaI CYCGRG 1 cut(s) 518
AvaII GGWCC 2 cut(s) 651, 742
BaeGI GKGCMC 1 cut(s) 917
BaeI ACNNNNGTAYC 4 cut(s) 479, 487, 512, 520
BalI TGGCCA 1 cut(s) 1063
BamHI GGATCC 1 cut(s) 309
BanI GGYRCC 1 cut(s) 495
BauI CACGAG 2 cut(s) 1124, 1137
BbrPI CACGTG 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 631
Bbv12I GWGCWC 1 cut(s) 917
BbvI GCAGC 1 cut(s) 91
BccI CCATC 1 cut(s) 939
BceAI ACGGC 4 cut(s) 37, 341, 396, 1088
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 2 cut(s) 501, 789
BcoDI GTCTC 3 cut(s) 851, 1065, 1371
BfaI CTAG 4 cut(s) 351, 902, 1356, 1400
BfmI CTRYAG 1 cut(s) 819
BfuAI ACCTGC 1 cut(s) 140
BglII AGATCT 2 cut(s) 319, 799
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 2 cut(s) 501, 789
Bme18I GGWCC 2 cut(s) 651, 742
BmeT110I CYCGRG 1 cut(s) 518
BmgT120I GGNCC 2 cut(s) 651, 742
BmiI GGNNCC 3 cut(s) 311, 497, 588
BmrFI CCNGG 2 cut(s) 501, 789
BmrI ACTGGG 1 cut(s) 131
BmsI GCATC 5 cut(s) 69, 185, 1032, 1258, 1368
BmuI ACTGGG 1 cut(s) 131
BpiI GAAGAC 1 cut(s) 631
BplI GAGNNNNNCTC 2 cut(s) 789, 821
BpmI CTGGAG 1 cut(s) 579
BpuEI CTTGAG 2 cut(s) 791, 1439
BsaAI YACGTR 1 cut(s) 288
BsaJI CCNNGG 3 cut(s) 329, 499, 686
BsaXI ACNNNNNCTCC 2 cut(s) 1247, 1277
Bsc4I CCNNNNNNNGG 2 cut(s) 794, 1110
Bse1I ACTGG 3 cut(s) 126, 596, 910
Bse3DI GCAATG 1 cut(s) 740
BseBI CCWGG 2 cut(s) 501, 789
BseDI CCNNGG 3 cut(s) 329, 499, 686
BseGI GGATG 4 cut(s) 200, 281, 363, 950
BseLI CCNNNNNNNGG 2 cut(s) 794, 1110
BseMI GCAATG 1 cut(s) 740
BseNI ACTGG 3 cut(s) 126, 596, 910
BseRI GAGGAG 3 cut(s) 810, 1190, 1289
BseSI GKGCMC 1 cut(s) 917
BseXI GCAGC 1 cut(s) 91
BseYI CCCAGC 1 cut(s) 663
Bsh1236I CGCG 2 cut(s) 747, 1307
BshFI GGCC 3 cut(s) 24, 328, 1063
BshNI GGYRCC 1 cut(s) 495
BsiHKAI GWGCWC 1 cut(s) 917
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 2 cut(s) 1253, 1286
BsiWI CGTACG 2 cut(s) 417, 753
BslFI GGGAC 2 cut(s) 531, 1287
BslI CCNNNNNNNGG 2 cut(s) 794, 1110
BsmAI GTCTC 3 cut(s) 851, 1065, 1371
BsmBI CGTCTC 2 cut(s) 851, 1065
BsmFI GGGAC 2 cut(s) 531, 1287
BsnI GGCC 3 cut(s) 24, 328, 1063
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 1 cut(s) 917
Bsp19I CCATGG 2 cut(s) 329, 686
BspACI CCGC 4 cut(s) 244, 745, 1305, 1334
BspANI GGCC 3 cut(s) 24, 328, 1063
BspFNI CGCG 2 cut(s) 747, 1307
BspLI GGNNCC 3 cut(s) 311, 497, 588
BspMI ACCTGC 1 cut(s) 140
BspPI GGATC 5 cut(s) 304, 317, 394, 779, 1388
BspT107I GGYRCC 1 cut(s) 495
BsrDI GCAATG 1 cut(s) 740
BsrI ACTGG 3 cut(s) 126, 596, 910
BssECI CCNNGG 3 cut(s) 329, 499, 686
BssSI CACGAG 2 cut(s) 1124, 1137
BssT1I CCWWGG 2 cut(s) 329, 686
Bst2BI CACGAG 2 cut(s) 1124, 1137
Bst2UI CCWGG 2 cut(s) 501, 789
Bst4CI ACNGT 7 cut(s) 40, 76, 272, 483, 492, 611, 725
Bst6I CTCTTC 3 cut(s) 787, 825, 1356
BstBAI YACGTR 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 625
BstDEI CTNAG 1 cut(s) 112
BstDSI CCRYGG 2 cut(s) 329, 686
BstENI CCTNNNNNAGG 1 cut(s) 792
BstF5I GGATG 4 cut(s) 200, 281, 363, 950
BstFNI CGCG 2 cut(s) 747, 1307
BstHHI GCGC 1 cut(s) 385
BstMAI GTCTC 3 cut(s) 851, 1065, 1371
BstNI CCWGG 2 cut(s) 501, 789
BstNSI RCATGY 1 cut(s) 984
BstSCI CCNGG 2 cut(s) 499, 787
BstSFI CTRYAG 1 cut(s) 819
BstSLI GKGCMC 1 cut(s) 917
BstUI CGCG 2 cut(s) 747, 1307
BstV1I GCAGC 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 631
BstX2I RGATCY 3 cut(s) 309, 319, 799
BstYI RGATCY 3 cut(s) 309, 319, 799
BsuRI GGCC 3 cut(s) 24, 328, 1063
BtgI CCRYGG 2 cut(s) 329, 686
BtsCI GGATG 4 cut(s) 200, 281, 363, 950
BtsIMutI CAGTG 1 cut(s) 917
BveI ACCTGC 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 625
CfoI GCGC 1 cut(s) 385
Cfr13I GGNCC 2 cut(s) 651, 742
CseI GACGC 3 cut(s) 542, 629, 739
Csp6I GTAC 6 cut(s) 206, 418, 496, 754, 1086, 1106
CviAII CATG 6 cut(s) 314, 330, 687, 827, 951, 981
CviQI GTAC 6 cut(s) 206, 418, 496, 754, 1086, 1106
DdeI CTNAG 1 cut(s) 112
DraI TTTAAA 2 cut(s) 156, 1407
EaeI YGGCCR 3 cut(s) 22, 326, 1061
Eam1104I CTCTTC 3 cut(s) 787, 825, 1356
EarI CTCTTC 3 cut(s) 787, 825, 1356
EciI GGCGGA 1 cut(s) 1349
Eco130I CCWWGG 2 cut(s) 329, 686
Eco47I GGWCC 2 cut(s) 651, 742
Eco57I CTGAAG 1 cut(s) 690
Eco72I CACGTG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 518
EcoNI CCTNNNNNAGG 1 cut(s) 792
EcoRII CCWGG 2 cut(s) 499, 787
EcoT14I CCWWGG 2 cut(s) 329, 686
ErhI CCWWGG 2 cut(s) 329, 686
Esp3I CGTCTC 2 cut(s) 851, 1065
FaeI CATG 6 cut(s) 317, 333, 690, 830, 954, 984
FalI AAGNNNNNCTT 2 cut(s) 1401, 1433
FaqI GGGAC 2 cut(s) 531, 1287
FatI CATG 6 cut(s) 313, 329, 686, 826, 950, 980
FauI CCCGC 1 cut(s) 1312
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 4 cut(s) 207, 268, 370, 957
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 4 cut(s) 351, 902, 1356, 1400
GlaI GCGC 1 cut(s) 384
GluI GCNGC 1 cut(s) 105
GsaI CCCAGC 1 cut(s) 667
GsuI CTGGAG 1 cut(s) 579
HaeIII GGCC 3 cut(s) 24, 328, 1063
HapII CCGG 2 cut(s) 1253, 1286
HgaI GACGC 3 cut(s) 542, 629, 739
HhaI GCGC 1 cut(s) 385
Hin1II CATG 6 cut(s) 317, 333, 690, 830, 954, 984
Hin6I GCGC 1 cut(s) 383
HinP1I GCGC 1 cut(s) 383
HincII GTYRAC 2 cut(s) 565, 578
HindII GTYRAC 2 cut(s) 565, 578
HindIII AAGCTT 1 cut(s) 625
HinfI GANTC 8 cut(s) 474, 885, 986, 1014, 1076, 1258, 1337, 1364
HpaII CCGG 2 cut(s) 1253, 1286
HphI GGTGA 3 cut(s) 52, 409, 1192
Hpy166II GTNNAC 5 cut(s) 565, 578, 676, 915, 1086
Hpy188I TCNGA 3 cut(s) 557, 616, 1070
Hpy8I GTNNAC 5 cut(s) 565, 578, 676, 915, 1086
Hpy99I CGWCG 5 cut(s) 23, 89, 536, 554, 1312
HpyAV CCTTC 8 cut(s) 61, 303, 406, 577, 710, 733, 875, 935
HpyCH4III ACNGT 7 cut(s) 40, 76, 272, 483, 492, 611, 725
HpyCH4IV ACGT 3 cut(s) 287, 420, 678
HpyCH4V TGCA 5 cut(s) 149, 915, 1189, 1232, 1271
HpyF3I CTNAG 1 cut(s) 112
HpySE526I ACGT 3 cut(s) 287, 420, 678
Hsp92II CATG 6 cut(s) 317, 333, 690, 830, 954, 984
HspAI GCGC 1 cut(s) 383
KpnI GGTACC 1 cut(s) 499
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 5 cut(s) 69, 185, 1032, 1258, 1368
MaeI CTAG 4 cut(s) 351, 902, 1356, 1400
MaeII ACGT 3 cut(s) 287, 420, 678
MaeIII GTNAC 5 cut(s) 40, 404, 486, 605, 983
MboII GAAGA 8 cut(s) 16, 329, 377, 631, 794, 804, 842, 1373
MflI RGATCY 3 cut(s) 309, 319, 799
MhlI GDGCHC 1 cut(s) 917
MlsI TGGCCA 1 cut(s) 1063
MluCI AATT 5 cut(s) 458, 506, 1097, 1244, 1432
MluNI TGGCCA 1 cut(s) 1063
MlyI GAGTC 3 cut(s) 980, 1346, 1373
MmeI TCCRAC 2 cut(s) 287, 681
Mox20I TGGCCA 1 cut(s) 1063
MscI TGGCCA 1 cut(s) 1063
MseI TTAA 8 cut(s) 155, 257, 423, 1248, 1329, 1406, 1436, 1495
MslI CAYNNNNRTG 1 cut(s) 286
Msp20I TGGCCA 1 cut(s) 1063
MspA1I CMGCKG 1 cut(s) 104
MspI CCGG 2 cut(s) 1253, 1286
MspR9I CCNGG 2 cut(s) 501, 789
MvaI CCWGG 2 cut(s) 501, 789
MvnI CGCG 2 cut(s) 747, 1307
NcoI CCATGG 2 cut(s) 329, 686
NlaIII CATG 6 cut(s) 317, 333, 690, 830, 954, 984
NlaIV GGNNCC 3 cut(s) 311, 497, 588
NmuCI GTSAC 2 cut(s) 40, 983
NspI RCATGY 1 cut(s) 984
PaeR7I CTCGAG 1 cut(s) 518
PfeI GAWTC 5 cut(s) 474, 885, 1014, 1076, 1258
Pfl23II CGTACG 2 cut(s) 417, 753
PflFI GACNNNGTC 1 cut(s) 635
PfoI TCCNGGA 1 cut(s) 787
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 3 cut(s) 980, 1345, 1372
PmaCI CACGTG 1 cut(s) 288
PmlI CACGTG 1 cut(s) 288
PpsI GAGTC 3 cut(s) 980, 1345, 1372
Ppu21I YACGTR 1 cut(s) 288
PsiI TTATAA 1 cut(s) 1169
Psp6I CCWGG 2 cut(s) 499, 787
PspCI CACGTG 1 cut(s) 288
PspFI CCCAGC 1 cut(s) 663
PspGI CCWGG 2 cut(s) 499, 787
PspLI CGTACG 2 cut(s) 417, 753
PspN4I GGNNCC 3 cut(s) 311, 497, 588
PspPI GGNCC 2 cut(s) 651, 742
PsuI RGATCY 3 cut(s) 309, 319, 799
PsyI GACNNNGTC 1 cut(s) 635
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 6 cut(s) 207, 419, 497, 755, 1087, 1107
RsaNI GTAC 6 cut(s) 206, 418, 496, 754, 1086, 1106
RseI CAYNNNNRTG 1 cut(s) 286
SaqAI TTAA 8 cut(s) 155, 257, 423, 1248, 1329, 1406, 1436, 1495
SatI GCNGC 1 cut(s) 105
Sau96I GGNCC 2 cut(s) 651, 742
SchI GAGTC 3 cut(s) 980, 1346, 1373
ScrFI CCNGG 2 cut(s) 501, 789
SduI GDGCHC 1 cut(s) 917
SfaNI GCATC 5 cut(s) 69, 185, 1032, 1258, 1368
SfcI CTRYAG 1 cut(s) 819
Sfr274I CTCGAG 1 cut(s) 518
SinI GGWCC 2 cut(s) 651, 742
SlaI CTCGAG 1 cut(s) 518
SmiMI CAYNNNNRTG 1 cut(s) 286
SmlI CTYRAG 3 cut(s) 518, 806, 1418
SmoI CTYRAG 3 cut(s) 518, 806, 1418
Sse9I AATT 5 cut(s) 458, 506, 1097, 1244, 1432
SsiI CCGC 4 cut(s) 244, 745, 1305, 1334
SspMI CTAG 4 cut(s) 351, 902, 1356, 1400
StyD4I CCNGG 2 cut(s) 499, 787
StyI CCWWGG 2 cut(s) 329, 686
TaaI ACNGT 7 cut(s) 40, 76, 272, 483, 492, 611, 725
TaiI ACGT 3 cut(s) 290, 423, 681
TaqI TCGA 6 cut(s) 52, 132, 251, 363, 519, 531
TasI AATT 5 cut(s) 458, 506, 1097, 1244, 1432
TatI WGTACW 1 cut(s) 1085
TfiI GAWTC 5 cut(s) 474, 885, 1014, 1076, 1258
Tru1I TTAA 8 cut(s) 155, 257, 423, 1248, 1329, 1406, 1436, 1495
Tru9I TTAA 8 cut(s) 155, 257, 423, 1248, 1329, 1406, 1436, 1495
TscAI CASTG 1 cut(s) 917
TseFI GTSAC 2 cut(s) 40, 983
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 2 cut(s) 40, 983
TspDTI ATGAA 8 cut(s) 17, 23, 70, 85, 330, 471, 843, 1202
TspGWI ACGGA 6 cut(s) 207, 293, 392, 593, 1251, 1325
TspRI CASTG 1 cut(s) 917
Tth111I GACNNNGTC 1 cut(s) 635
VneI GTGCAC 1 cut(s) 913
VpaK11BI GGWCC 2 cut(s) 651, 742
XagI CCTNNNNNAGG 1 cut(s) 792
XapI RAATTY 3 cut(s) 458, 1097, 1244
XbaI TCTAGA 1 cut(s) 901
XceI RCATGY 1 cut(s) 984
XhoI CTCGAG 1 cut(s) 518
XspI CTAG 4 cut(s) 351, 902, 1356, 1400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.