FvH4_7g13870

O-glucosyltransferase rumi homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004904
Physical Location & Seq
Forward (+)
12360123 .. 12362430
2308 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13870.t1

Sequence Viewer

Length: 1578 bp
ATGAAGAGGAACAATGCGAAGCATTTGTATGATATCTTGGACGGGTCAGGGTTGCATAGGCATATTGCAGGATCAAGTTGGCAGCCATTGAAGAAGAGAAGCGCAACATTTACGACTATTGCCTTCTTGTTCTTGTTGTTCTTCTTTGTTGCTGCGCTGGTGTATGGTGCAGGCTGGAGTGTTGATATTGACTCTTTTATATTTTCAGGTGCTTCTTCTAACAAATCAATCCTAACACCAACAACAACAATACCCAAAACCATTGAATTCCCACTCCAATGTACCACAGACACAAATGTCACACAAACTTGTCCAAGAACCTACCCTAGCAAACACAACCCTACAAATCCTAACCTTCCATCAAATGTCACATGCCCAGCATACTTCCGATGGATCCACGAAGATCTACGGCCGTGGAGAGAGACAGGAATCACTAGGGACATGGTGGAGCGAGCGCGCAGGACGGCACATTTTAGGCTCGTGATCGTGGACGGCAAGGCCTACCTAGAGAAGTATAGGCAGTCCATACAAACTAGGGACATGTTTACATTATGGGGTATTTTGCAGCTTCTAAGGGTATACCCTGGTAGATTGCCTGACTTGGAGATCATGTTCGACTGTGATGATCGGCCTGTGGTCCGATCAAGAGACTTTCAGGGACCAAATGCAGGCCCACCTCCTGTTTTCCGATACTGCGCCGATGAAGGCAGCTTGGACATTGTGTTCCCAGATTGGTCTTTTTGGGGCTGGGCGGAGACCAATATAAAGCCATGGAAAAACTTACTGCCAAAAATAAAGGAAGGCAATAAAAGAACAAAGTGGAAGGATAGGGTGCCCTATGCTTACTGGAAAGGTAACCCAAATGTTGCTCCAACCAGGAAAGACCTTCTCAAATGCAACGTTTCAGACCAAAATGACTGGAATACACTCCTATACATTCAGAACTGGGAAAAAGAATCCAAAGAAGGATACAAGCAGTCCAGCTTAGAAGACCAATGCAAGCACAGATACAAAATTTATATAGAAGGCTGGGCATGGTCTGTGAGTGAAAAATACATAATGGCATGTGATTCTATGACCTTGTATGTTAACCCTCATTTCTACGATTTCTACATGAGAGGCATGCTACCATTGGAGCATTATTGGCCGATTAGGGACAACAGCAAGTGCACTTCTCTCAAATTTGCTGTGGAATGGGGTAATAATCACACAGAAAAGGCAGAGGCAATTGGGAAAGCAGCAAGCAACTTCATACAAGAAGATCTGAAGATGGACTATGTGTATGATTACATGTTTCATGTACTGAATGAGTATGCAAAGCTCTTGAAATTCAAGCCAACGATACCTCCTAACGCAGTCGAACTATGTTCTGAAACAATGGCATGCCCTACAACTGGCACATGGAATAAATTCATGGAGGAGTCCATGGTGATGTCTCCTAGTGATGAAATCCCATGTTCTTTGCCTCCTCCGTATGATCCTCAAGCTCTTCGCAGTTTTCTCGAGAGAAAAGCCAACTCAACTAGGCAAGTGGAAGATTGGGAAAATGAATATTGGCAGAATTCTAGAAAACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
Glyco_transf_90

Protein Analysis

526

Amino Acids

61.31

Weight (kDa)

8.42

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_90 PF05686 122 - 515 5.3e-196 Glycosyl transferase family 90
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 832
AccI GTMKAC 1 cut(s) 579
AccII CGCG 1 cut(s) 457
AciI CCGC 1 cut(s) 752
AclI AACGTT 1 cut(s) 900
AclWI GGATC 4 cut(s) 79, 388, 401, 1472
AcoI YGGCCR 2 cut(s) 410, 1145
AcsI RAATTY 6 cut(s) 266, 1014, 1181, 1328, 1409, 1561
AcuI CTGAAG 1 cut(s) 1286
AfaI GTAC 2 cut(s) 283, 1302
AfiI CCNNNNNNNGG 2 cut(s) 668, 1394
AflIII ACRYGT 2 cut(s) 540, 1290
AgsI TTSAA 4 cut(s) 91, 266, 1327, 1333
AjnI CCWGG 2 cut(s) 583, 875
AloI GAACNNNNNNTCC 4 cut(s) 596, 628, 707, 739
AluBI AGCT 5 cut(s) 568, 711, 984, 1321, 1487
AluI AGCT 5 cut(s) 568, 711, 984, 1321, 1487
Alw21I GWGCWC 1 cut(s) 1172
Alw26I GTCTC 4 cut(s) 416, 642, 749, 1440
Alw44I GTGCAC 1 cut(s) 1168
AlwI GGATC 4 cut(s) 79, 388, 401, 1472
Ama87I CYCGRG 1 cut(s) 1502
AoxI GGCC 5 cut(s) 410, 498, 629, 670, 1145
ApaLI GTGCAC 1 cut(s) 1168
ApeKI GCWGC 5 cut(s) 82, 152, 565, 708, 1238
ApoI RAATTY 6 cut(s) 266, 1014, 1181, 1328, 1409, 1561
Asp700I GAANNNNTTC 1 cut(s) 1409
AspLEI GCGC 5 cut(s) 104, 157, 457, 459, 698
AspS9I GGNCC 3 cut(s) 637, 659, 671
AsuHPI GGTGA 1 cut(s) 1441
AvaI CYCGRG 1 cut(s) 1502
AvaII GGWCC 2 cut(s) 637, 659
BaeGI GKGCMC 2 cut(s) 837, 1172
BamHI GGATCC 1 cut(s) 393
BanI GGYRCC 1 cut(s) 832
BauI CACGAG 1 cut(s) 479
BbsI GAAGAC 1 cut(s) 996
Bbv12I GWGCWC 1 cut(s) 1172
BbvI GCAGC 5 cut(s) 94, 139, 577, 720, 1250
BccI CCATC 3 cut(s) 367, 384, 1264
BceAI ACGGC 4 cut(s) 397, 425, 480, 508
BcgI CGANNNNNNTGC 2 cut(s) 1483, 1517
BciT130I CCWGG 2 cut(s) 585, 877
BciVI GTATCC 1 cut(s) 962
BcoDI GTCTC 4 cut(s) 416, 642, 749, 1440
BfaI CTAG 7 cut(s) 327, 435, 506, 534, 1440, 1524, 1566
BfuI GTATCC 1 cut(s) 962
BglII AGATCT 2 cut(s) 403, 1261
BisI GCNGC 5 cut(s) 83, 153, 566, 709, 1239
BlsI GCNGC 5 cut(s) 84, 154, 567, 710, 1240
Bme1390I CCNGG 2 cut(s) 585, 877
Bme18I GGWCC 2 cut(s) 637, 659
BmeT110I CYCGRG 1 cut(s) 1502
BmgT120I GGNCC 3 cut(s) 637, 659, 671
BmiI GGNNCC 3 cut(s) 395, 660, 834
BmrFI CCNGG 2 cut(s) 585, 877
BmrI ACTGGG 1 cut(s) 955
BmuI ACTGGG 1 cut(s) 955
BpiI GAAGAC 1 cut(s) 996
BpmI CTGGAG 1 cut(s) 196
BpuEI CTTGAG 1 cut(s) 1467
BsaI GGTCTC 1 cut(s) 749
BsaJI CCNNGG 4 cut(s) 413, 583, 770, 1425
BsaXI ACNNNNNCTCC 4 cut(s) 596, 626, 1330, 1360
Bsc4I CCNNNNNNNGG 2 cut(s) 668, 1394
Bse1I ACTGG 4 cut(s) 851, 923, 950, 1399
BseBI CCWGG 2 cut(s) 585, 877
BseDI CCNNGG 4 cut(s) 413, 583, 770, 1425
BseLI CCNNNNNNNGG 2 cut(s) 668, 1394
BseNI ACTGG 4 cut(s) 851, 923, 950, 1399
BsePI GCGCGC 1 cut(s) 455
BseRI GAGGAG 2 cut(s) 1433, 1458
BseSI GKGCMC 2 cut(s) 837, 1172
BseX3I CGGCCG 1 cut(s) 410
BseXI GCAGC 5 cut(s) 94, 139, 577, 720, 1250
BseYI CCCAGC 3 cut(s) 376, 747, 1029
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 457
Bsh1285I CGRYCG 1 cut(s) 413
BshFI GGCC 5 cut(s) 412, 500, 631, 672, 1147
BshNI GGYRCC 1 cut(s) 832
BsiEI CGRYCG 1 cut(s) 413
BsiHKAI GWGCWC 1 cut(s) 1172
BsiHKCI CYCGRG 1 cut(s) 1502
BslFI GGGAC 4 cut(s) 452, 551, 672, 1169
BslI CCNNNNNNNGG 2 cut(s) 668, 1394
BsmAI GTCTC 4 cut(s) 416, 642, 749, 1440
BsmFI GGGAC 4 cut(s) 452, 551, 672, 1169
BsnI GGCC 5 cut(s) 412, 500, 631, 672, 1147
Bso31I GGTCTC 1 cut(s) 749
BsoBI CYCGRG 1 cut(s) 1502
Bsp1286I GDGCHC 2 cut(s) 837, 1172
Bsp143I GATC 9 cut(s) 71, 393, 403, 483, 606, 625, 641, 1261, 1477
Bsp19I CCATGG 2 cut(s) 770, 1425
BspACI CCGC 1 cut(s) 752
BspANI GGCC 5 cut(s) 412, 500, 631, 672, 1147
BspFNI CGCG 1 cut(s) 457
BspLI GGNNCC 3 cut(s) 395, 660, 834
BspPI GGATC 4 cut(s) 79, 388, 401, 1472
BspQI GCTCTTC 1 cut(s) 1494
BspT107I GGYRCC 1 cut(s) 832
BspTNI GGTCTC 1 cut(s) 749
BsrI ACTGG 4 cut(s) 851, 923, 950, 1399
BssECI CCNNGG 4 cut(s) 413, 583, 770, 1425
BssHII GCGCGC 1 cut(s) 455
BssMI GATC 9 cut(s) 71, 393, 403, 483, 606, 625, 641, 1261, 1477
BssNAI GTATAC 1 cut(s) 580
BssSI CACGAG 1 cut(s) 479
BssT1I CCWWGG 2 cut(s) 770, 1425
Bst1107I GTATAC 1 cut(s) 580
Bst2BI CACGAG 1 cut(s) 479
Bst2UI CCWGG 2 cut(s) 585, 877
Bst4CI ACNGT 1 cut(s) 620
Bst6I CTCTTC 2 cut(s) 89, 1494
BstC8I GCNNGC 8 cut(s) 172, 453, 457, 670, 1001, 1124, 1243, 1384
BstDEI CTNAG 2 cut(s) 572, 985
BstDSI CCRYGG 3 cut(s) 413, 770, 1425
BstEII GGTNACC 1 cut(s) 854
BstFNI CGCG 1 cut(s) 457
BstHHI GCGC 5 cut(s) 104, 157, 457, 459, 698
BstKTI GATC 9 cut(s) 74, 396, 406, 486, 609, 628, 644, 1264, 1480
BstMAI GTCTC 4 cut(s) 416, 642, 749, 1440
BstMBI GATC 9 cut(s) 71, 393, 403, 483, 606, 625, 641, 1261, 1477
BstMCI CGRYCG 1 cut(s) 413
BstMWI GCNNNNNNNGC 1 cut(s) 1144
BstNI CCWGG 2 cut(s) 585, 877
BstNSI RCATGY 6 cut(s) 375, 544, 1068, 1126, 1294, 1386
BstPI GGTNACC 1 cut(s) 854
BstSCI CCNGG 2 cut(s) 583, 875
BstSLI GKGCMC 2 cut(s) 837, 1172
BstUI CGCG 1 cut(s) 457
BstV1I GCAGC 5 cut(s) 94, 139, 577, 720, 1250
BstV2I GAAGAC 1 cut(s) 996
BstX2I RGATCY 3 cut(s) 393, 403, 1261
BstYI RGATCY 3 cut(s) 393, 403, 1261
BstZ17I GTATAC 1 cut(s) 580
BstZI CGGCCG 1 cut(s) 410
BsuI GTATCC 1 cut(s) 962
BsuRI GGCC 5 cut(s) 412, 500, 631, 672, 1147
BtgI CCRYGG 3 cut(s) 413, 770, 1425
Cac8I GCNNGC 8 cut(s) 172, 453, 457, 670, 1001, 1124, 1243, 1384
CfoI GCGC 5 cut(s) 104, 157, 457, 459, 698
Cfr13I GGNCC 3 cut(s) 637, 659, 671
Csp6I GTAC 2 cut(s) 282, 1301
CviQI GTAC 2 cut(s) 282, 1301
DdeI CTNAG 2 cut(s) 572, 985
DpnI GATC 9 cut(s) 73, 395, 405, 485, 608, 627, 643, 1263, 1479
DpnII GATC 9 cut(s) 71, 393, 403, 483, 606, 625, 641, 1261, 1477
DrdI GACNNNNNNGTC 1 cut(s) 296
DseDI GACNNNNNNGTC 1 cut(s) 296
EaeI YGGCCR 2 cut(s) 410, 1145
EagI CGGCCG 1 cut(s) 410
Eam1104I CTCTTC 2 cut(s) 89, 1494
EarI CTCTTC 2 cut(s) 89, 1494
EciI GGCGGA 1 cut(s) 767
EclXI CGGCCG 1 cut(s) 410
Eco130I CCWWGG 2 cut(s) 770, 1425
Eco147I AGGCCT 1 cut(s) 500
Eco31I GGTCTC 1 cut(s) 749
Eco32I GATATC 1 cut(s) 34
Eco47I GGWCC 2 cut(s) 637, 659
Eco52I CGGCCG 1 cut(s) 410
Eco57I CTGAAG 1 cut(s) 1286
Eco88I CYCGRG 1 cut(s) 1502
Eco91I GGTNACC 1 cut(s) 854
EcoO65I GGTNACC 1 cut(s) 854
EcoRI GAATTC 2 cut(s) 266, 1561
EcoRII CCWGG 2 cut(s) 583, 875
EcoRV GATATC 1 cut(s) 34
EcoT14I CCWWGG 2 cut(s) 770, 1425
ErhI CCWWGG 2 cut(s) 770, 1425
FaqI GGGAC 4 cut(s) 452, 551, 672, 1169
FblI GTMKAC 1 cut(s) 579
Fnu4HI GCNGC 5 cut(s) 83, 153, 566, 709, 1239
Fsp4HI GCNGC 5 cut(s) 83, 153, 566, 709, 1239
FspBI CTAG 7 cut(s) 327, 435, 506, 534, 1440, 1524, 1566
GlaI GCGC 5 cut(s) 103, 156, 456, 458, 697
GluI GCNGC 5 cut(s) 83, 153, 566, 709, 1239
GsaI CCCAGC 3 cut(s) 380, 751, 1033
GsuI CTGGAG 1 cut(s) 196
HaeIII GGCC 5 cut(s) 412, 500, 631, 672, 1147
HhaI GCGC 5 cut(s) 104, 157, 457, 459, 698
Hin6I GCGC 5 cut(s) 102, 155, 455, 457, 696
HinP1I GCGC 5 cut(s) 102, 155, 455, 457, 696
HincII GTYRAC 1 cut(s) 1090
HindII GTYRAC 1 cut(s) 1090
HinfI GANTC 5 cut(s) 191, 429, 956, 1070, 1421
HpaI GTTAAC 1 cut(s) 1090
HphI GGTGA 1 cut(s) 1441
Hpy166II GTNNAC 5 cut(s) 490, 546, 580, 1090, 1170
Hpy188I TCNGA 7 cut(s) 389, 641, 689, 907, 942, 1266, 1372
Hpy188III TCNNGA 6 cut(s) 481, 645, 1324, 1502, 1504, 1566
Hpy8I GTNNAC 5 cut(s) 490, 546, 580, 1090, 1170
HpyAV CCTTC 8 cut(s) 133, 365, 698, 794, 817, 896, 959, 1019
HpyCH4III ACNGT 1 cut(s) 620
HpyCH4IV ACGT 1 cut(s) 900
HpyCH4V TGCA 9 cut(s) 55, 68, 170, 565, 668, 897, 999, 1170, 1316
HpyF10VI GCNNNNNNNGC 1 cut(s) 1144
HpyF3I CTNAG 2 cut(s) 572, 985
HpySE526I ACGT 1 cut(s) 900
HspAI GCGC 5 cut(s) 102, 155, 455, 457, 696
KspAI GTTAAC 1 cut(s) 1090
Kzo9I GATC 9 cut(s) 71, 393, 403, 483, 606, 625, 641, 1261, 1477
LguI GCTCTTC 1 cut(s) 1494
LmnI GCTCC 3 cut(s) 448, 874, 1135
Lsp1109I GCAGC 5 cut(s) 94, 139, 577, 720, 1250
MaeI CTAG 7 cut(s) 327, 435, 506, 534, 1440, 1524, 1566
MaeII ACGT 1 cut(s) 900
MaeIII GTNAC 3 cut(s) 298, 367, 854
MalI GATC 9 cut(s) 73, 395, 405, 485, 608, 627, 643, 1263, 1479
MboI GATC 9 cut(s) 71, 393, 403, 483, 606, 625, 641, 1261, 1477
MfeI CAATTG 1 cut(s) 1227
MflI RGATCY 3 cut(s) 393, 403, 1261
MhlI GDGCHC 2 cut(s) 837, 1172
MluCI AATT 7 cut(s) 266, 1014, 1181, 1227, 1328, 1409, 1561
MlyI GAGTC 2 cut(s) 185, 1430
MmeI TCCRAC 1 cut(s) 896
MnlI CCTC 9 cut(s) 687, 1104, 1112, 1216, 1356, 1411, 1476, 1479, 1491
MroXI GAANNNNTTC 1 cut(s) 1409
MseI TTAA 1 cut(s) 1089
MslI CAYNNNNRTG 3 cut(s) 27, 277, 1430
MspR9I CCNGG 2 cut(s) 585, 877
MunI CAATTG 1 cut(s) 1227
MvaI CCWGG 2 cut(s) 585, 877
MvnI CGCG 1 cut(s) 457
MwoI GCNNNNNNNGC 1 cut(s) 1144
NcoI CCATGG 2 cut(s) 770, 1425
NdeII GATC 9 cut(s) 71, 393, 403, 483, 606, 625, 641, 1261, 1477
NlaIV GGNNCC 3 cut(s) 395, 660, 834
NmuCI GTSAC 2 cut(s) 298, 367
NspI RCATGY 6 cut(s) 375, 544, 1068, 1126, 1294, 1386
PaeI GCATGC 2 cut(s) 1126, 1386
PaeR7I CTCGAG 1 cut(s) 1502
PauI GCGCGC 1 cut(s) 455
PceI AGGCCT 1 cut(s) 500
PciI ACATGT 2 cut(s) 540, 1290
PciSI GCTCTTC 1 cut(s) 1494
PdmI GAANNNNTTC 1 cut(s) 1409
PfeI GAWTC 3 cut(s) 429, 956, 1070
PkrI GCNGC 5 cut(s) 84, 154, 567, 710, 1240
PleI GAGTC 2 cut(s) 185, 1429
PpsI GAGTC 2 cut(s) 185, 1429
PscI ACATGT 2 cut(s) 540, 1290
Psp1406I AACGTT 1 cut(s) 900
Psp6I CCWGG 2 cut(s) 583, 875
PspEI GGTNACC 1 cut(s) 854
PspFI CCCAGC 3 cut(s) 376, 747, 1029
PspGI CCWGG 2 cut(s) 583, 875
PspN4I GGNNCC 3 cut(s) 395, 660, 834
PspPI GGNCC 3 cut(s) 637, 659, 671
PsuI RGATCY 3 cut(s) 393, 403, 1261
PteI GCGCGC 1 cut(s) 455
RsaI GTAC 2 cut(s) 283, 1302
RsaNI GTAC 2 cut(s) 282, 1301
RseI CAYNNNNRTG 3 cut(s) 27, 277, 1430
SapI GCTCTTC 1 cut(s) 1494
SaqAI TTAA 1 cut(s) 1089
SatI GCNGC 5 cut(s) 83, 153, 566, 709, 1239
Sau3AI GATC 9 cut(s) 71, 393, 403, 483, 606, 625, 641, 1261, 1477
Sau96I GGNCC 3 cut(s) 637, 659, 671
SchI GAGTC 2 cut(s) 185, 1430
ScrFI CCNGG 2 cut(s) 585, 877
SduI GDGCHC 2 cut(s) 837, 1172
Sfr274I CTCGAG 1 cut(s) 1502
SinI GGWCC 2 cut(s) 637, 659
SlaI CTCGAG 1 cut(s) 1502
SmiMI CAYNNNNRTG 3 cut(s) 27, 277, 1430
SmlI CTYRAG 2 cut(s) 1482, 1502
SmoI CTYRAG 2 cut(s) 1482, 1502
SphI GCATGC 2 cut(s) 1126, 1386
Sse9I AATT 7 cut(s) 266, 1014, 1181, 1227, 1328, 1409, 1561
SseBI AGGCCT 1 cut(s) 500
SsiI CCGC 1 cut(s) 752
SspI AATATT 1 cut(s) 1553
SspMI CTAG 7 cut(s) 327, 435, 506, 534, 1440, 1524, 1566
StuI AGGCCT 1 cut(s) 500
StyD4I CCNGG 2 cut(s) 583, 875
StyI CCWWGG 2 cut(s) 770, 1425
TaaI ACNGT 1 cut(s) 620
TaiI ACGT 1 cut(s) 903
TaqI TCGA 3 cut(s) 615, 1359, 1503
TasI AATT 7 cut(s) 266, 1014, 1181, 1227, 1328, 1409, 1561
TatI WGTACW 1 cut(s) 1300
TfiI GAWTC 3 cut(s) 429, 956, 1070
Tru1I TTAA 1 cut(s) 1089
Tru9I TTAA 1 cut(s) 1089
TseFI GTSAC 2 cut(s) 298, 367
TseI GCWGC 5 cut(s) 82, 152, 565, 708, 1238
Tsp45I GTSAC 2 cut(s) 298, 367
TspDTI ATGAA 7 cut(s) 17, 717, 1240, 1286, 1402, 1461, 1563
TspGWI ACGGA 1 cut(s) 1461
VneI GTGCAC 1 cut(s) 1168
VpaK11BI GGWCC 2 cut(s) 637, 659
XapI RAATTY 6 cut(s) 266, 1014, 1181, 1328, 1409, 1561
XbaI TCTAGA 1 cut(s) 1565
XceI RCATGY 6 cut(s) 375, 544, 1068, 1126, 1294, 1386
XhoI CTCGAG 1 cut(s) 1502
XmiI GTMKAC 1 cut(s) 579
XmnI GAANNNNTTC 1 cut(s) 1409
XspI CTAG 7 cut(s) 327, 435, 506, 534, 1440, 1524, 1566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.