AT3G61290

Lipopolysaccharide-modifying protein (InterPro IPR006598), Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004904
Physical Location & Seq
Forward (+)
22684407 .. 22686907
2501 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61290.1

Sequence Viewer

Length: 1368 bp
ATGATGACTACATCAATATTGACAACGACAAACACAATCATCAAAATCCCTTTAAAGTGCAACGCAACACAAACATGTCCTTCAACTTATCCAAGCAGATTGGAACCAATGATCTCTTCCTTGGAAACTTGTCCTGACTACTTCAGATGGATCCAACAAGACCTAAAAGTATGGGAAGAGACAGGGATCACAAGGGAAACACTAGAGAGAGCAAAACCAAAGGCTCATTTCAGGCTAGTGATAAAGTCAGGGAGATTGTACGTTCATCAGTACGACAAGGCTTATGAGTCAAGAGATGTGCTCACAATCTGGGGGATACTTCAACTTTTAAGAATGTATCCTGGTCAAGTCCCTGATCTTGAGCTTCTCTTCTTCTGTCATGATATACCAGCTATTTGGAAACGAGACTTTAGGCAACCGGAACCAAATGCCACGTGGCCTCCTCCGCCGTTGTTTCAGTACTGTGGTCACCGTGAAGCCTACGGCATCGTTTTCCCTGATTGGAGCTTCTGGGGCTGGCCGGAGGTGAATATAAAGGAGTGGACAAAATTATCTGTGGCGATTAGAGAAGCCAACAAAAGGGTTAAATGGAACGATAGAGTTCCATATGCTTACTGGAAAGGGAACTCTGGGGTTCATCGCGAAAGAGGAAACCTTATGAAATGTAACTTCTCCGATAAGTATGATCCCATGGTTCGTCTCTATGAGCAGGATTGGGGGAAGGAGAGGGAGATAGGGTTTAAAAGTTCAAACCTAGAAGACCAATGCACCCATAGGTACAAGATCTACATAGAAGGTCGAGCATGGTCGGTGAGCAAAAAATACATACTAGCATGCGACAGTATGACTCTACTGATCAAAGCCGAGTACTTCGATTTCTTCGGAAGAAGTTTGGTTCCGTTAGAACATTACTGGCCCATTAAATCTCACGAGAAATGTGGTGATCTCAAGTTCGCCGTGGAATGGGGTAACAACAACACTAAGAAGGCGCAAGTTATAGGGAGACAGGGAAGTGATTACATTATGAAGAACCTAGAGATGAAGTATGTGTATGATTACATGTTGTATGTGTTGCAAGGGTACGGGAAACTAATGAAGTTGGATGTGACTGTGCCTGAAAATGCAACCGAAGTGTGTTCGGAGACGATGGCTTGTCCGATCACTGACGGTGGCCTGATCAGGCAGTGCATGGACGACTCATTGGTTATGTCTCCAAGCGTTAAATCGGCTTGTGATTTGCCGCGGCCTTATAGAGATGATGAGCTGAAGAGGTTTCTTGAGAAACAAGAAAGTGCGGAGAGAAAGGTTGAGAAGTGGACCAATGAGTATTGGGAGGCCCAAAACAAGACATTTCAACAAAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
Glyco_transf_90

Protein Analysis

455

Amino Acids

53.71

Weight (kDa)

8.5

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_90 PF05686 41 - 440 5e-182 Glycosyl transferase family 90
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 642, 1243
AciI CCGC 4 cut(s) 446, 1241, 1243, 1295
AclWI GGATC 4 cut(s) 145, 158, 194, 680
AcoI YGGCCR 1 cut(s) 518
AcuI CTGAAG 2 cut(s) 127, 1286
AcvI CACGTG 1 cut(s) 435
AfaI GTAC 6 cut(s) 260, 272, 461, 779, 869, 1082
AfiI CCNNNNNNNGG 2 cut(s) 579, 963
AflIII ACRYGT 2 cut(s) 74, 1059
AgsI TTSAA 4 cut(s) 84, 323, 750, 1355
AjnI CCWGG 1 cut(s) 340
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AluBI AGCT 4 cut(s) 364, 392, 507, 1264
AluI AGCT 4 cut(s) 364, 392, 507, 1264
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 6 cut(s) 173, 399, 704, 997, 1136, 1215
AlwI GGATC 4 cut(s) 145, 158, 194, 680
AoxI GGCC 6 cut(s) 437, 518, 914, 1171, 1244, 1335
AspLEI GCGC 1 cut(s) 991
AspS9I GGNCC 3 cut(s) 915, 1317, 1336
AsuHPI GGTGA 4 cut(s) 461, 538, 823, 953
AvaII GGWCC 1 cut(s) 1317
BamHI GGATCC 1 cut(s) 150
BauI CACGAG 1 cut(s) 929
BbrPI CACGTG 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 765
Bbv12I GWGCWC 1 cut(s) 303
BccI CCATC 2 cut(s) 141, 1141
BceAI ACGGC 3 cut(s) 433, 499, 941
BciT130I CCWGG 1 cut(s) 342
BciVI GTATCC 2 cut(s) 309, 348
BclI TGATCA 2 cut(s) 855, 1176
BcoDI GTCTC 6 cut(s) 173, 399, 704, 997, 1136, 1215
BfaI CTAG 5 cut(s) 203, 236, 755, 830, 1034
BfuI GTATCC 2 cut(s) 309, 348
BglII AGATCT 1 cut(s) 783
BisI GCNGC 2 cut(s) 1241, 1244
BlsI GCNGC 2 cut(s) 1242, 1245
BmcAI AGTACT 2 cut(s) 461, 869
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 1317
BmgT120I GGNCC 3 cut(s) 915, 1317, 1336
BmiI GGNNCC 4 cut(s) 105, 152, 423, 897
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 495
BpiI GAAGAC 1 cut(s) 765
BplI GAGNNNNNCTC 2 cut(s) 285, 317
BpuEI CTTGAG 3 cut(s) 380, 932, 1298
BsaAI YACGTR 1 cut(s) 435
BsaJI CCNNGG 4 cut(s) 120, 690, 957, 1241
BsaWI WCCGGW 1 cut(s) 418
BsaXI ACNNNNNCTCC 4 cut(s) 424, 454, 722, 752
Bsc4I CCNNNNNNNGG 2 cut(s) 579, 963
Bse1I ACTGG 2 cut(s) 620, 917
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 4 cut(s) 120, 690, 957, 1241
BseGI GGATG 1 cut(s) 1108
BseLI CCNNNNNNNGG 2 cut(s) 579, 963
BseNI ACTGG 2 cut(s) 620, 917
BseRI GAGGAG 1 cut(s) 432
Bsh1236I CGCG 2 cut(s) 642, 1243
BshFI GGCC 6 cut(s) 439, 520, 916, 1173, 1246, 1337
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 2 cut(s) 419, 521
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 2 cut(s) 579, 963
BsmAI GTCTC 6 cut(s) 173, 399, 704, 997, 1136, 1215
BsmBI CGTCTC 2 cut(s) 704, 1136
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 6 cut(s) 439, 520, 916, 1173, 1246, 1337
Bsp1286I GDGCHC 1 cut(s) 303
Bsp19I CCATGG 1 cut(s) 690
Bsp68I TCGCGA 1 cut(s) 642
BspACI CCGC 4 cut(s) 446, 1241, 1243, 1295
BspANI GGCC 6 cut(s) 439, 520, 916, 1173, 1246, 1337
BspFNI CGCG 2 cut(s) 642, 1243
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 4 cut(s) 105, 152, 423, 897
BspPI GGATC 4 cut(s) 145, 158, 194, 680
BsrI ACTGG 2 cut(s) 620, 917
BssECI CCNNGG 4 cut(s) 120, 690, 957, 1241
BssSI CACGAG 1 cut(s) 929
BssT1I CCWWGG 2 cut(s) 120, 690
Bst2BI CACGAG 1 cut(s) 929
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 5 cut(s) 464, 473, 842, 1111, 1169
Bst6I CTCTTC 4 cut(s) 121, 171, 374, 1262
BstBAI YACGTR 1 cut(s) 435
BstC8I GCNNGC 2 cut(s) 518, 835
BstDEI CTNAG 1 cut(s) 981
BstDSI CCRYGG 3 cut(s) 690, 957, 1241
BstEII GGTNACC 1 cut(s) 467
BstF5I GGATG 1 cut(s) 1108
BstFNI CGCG 2 cut(s) 642, 1243
BstHHI GCGC 1 cut(s) 991
BstMAI GTCTC 6 cut(s) 173, 399, 704, 997, 1136, 1215
BstMWI GCNNNNNNNGC 2 cut(s) 445, 513
BstNI CCWGG 1 cut(s) 342
BstNSI RCATGY 3 cut(s) 78, 837, 1063
BstPI GGTNACC 1 cut(s) 467
BstSCI CCNGG 1 cut(s) 340
BstUI CGCG 2 cut(s) 642, 1243
BstV2I GAAGAC 1 cut(s) 765
BstX2I RGATCY 2 cut(s) 150, 783
BstXI CCANNNNNNTGG 1 cut(s) 396
BstYI RGATCY 2 cut(s) 150, 783
BsuI GTATCC 2 cut(s) 309, 348
BsuRI GGCC 6 cut(s) 439, 520, 916, 1173, 1246, 1337
BtgI CCRYGG 3 cut(s) 690, 957, 1241
BtgZI GCGATG 1 cut(s) 623
BtsCI GGATG 1 cut(s) 1108
BtsI GCAGTG 1 cut(s) 1190
BtsIMutI CAGTG 2 cut(s) 1161, 1190
BtuMI TCGCGA 1 cut(s) 642
Cac8I GCNNGC 2 cut(s) 518, 835
CciI TCATGA 1 cut(s) 379
CfoI GCGC 1 cut(s) 991
Cfr13I GGNCC 3 cut(s) 915, 1317, 1336
Cfr42I CCGCGG 1 cut(s) 1244
Csp6I GTAC 6 cut(s) 259, 271, 460, 778, 868, 1081
CviAII CATG 7 cut(s) 75, 380, 691, 804, 834, 1060, 1189
CviQI GTAC 6 cut(s) 259, 271, 460, 778, 868, 1081
DdeI CTNAG 1 cut(s) 981
DraI TTTAAA 2 cut(s) 54, 742
EaeI YGGCCR 1 cut(s) 518
Eam1104I CTCTTC 4 cut(s) 121, 171, 374, 1262
EarI CTCTTC 4 cut(s) 121, 171, 374, 1262
EciI GGCGGA 1 cut(s) 435
Eco130I CCWWGG 2 cut(s) 120, 690
Eco47I GGWCC 1 cut(s) 1317
Eco57I CTGAAG 2 cut(s) 127, 1286
Eco72I CACGTG 1 cut(s) 435
Eco91I GGTNACC 1 cut(s) 467
EcoO65I GGTNACC 1 cut(s) 467
EcoRII CCWGG 1 cut(s) 340
EcoT14I CCWWGG 2 cut(s) 120, 690
ErhI CCWWGG 2 cut(s) 120, 690
Esp3I CGTCTC 2 cut(s) 704, 1136
FaeI CATG 7 cut(s) 78, 383, 694, 807, 837, 1063, 1192
FaqI GGGAC 1 cut(s) 335
FatI CATG 7 cut(s) 74, 379, 690, 803, 833, 1059, 1188
FauNDI CATATG 1 cut(s) 607
FbaI TGATCA 2 cut(s) 855, 1176
Fnu4HI GCNGC 2 cut(s) 1241, 1244
FokI GGATG 1 cut(s) 1115
Fsp4HI GCNGC 2 cut(s) 1241, 1244
FspBI CTAG 5 cut(s) 203, 236, 755, 830, 1034
GlaI GCGC 1 cut(s) 990
GluI GCNGC 2 cut(s) 1241, 1244
HaeIII GGCC 6 cut(s) 439, 520, 916, 1173, 1246, 1337
HapII CCGG 2 cut(s) 419, 521
HhaI GCGC 1 cut(s) 991
Hin1II CATG 7 cut(s) 78, 383, 694, 807, 837, 1063, 1192
Hin6I GCGC 1 cut(s) 989
HinP1I GCGC 1 cut(s) 989
HinfI GANTC 3 cut(s) 287, 847, 1196
HpaII CCGG 2 cut(s) 419, 521
HphI GGTGA 4 cut(s) 461, 538, 823, 953
Hpy166II GTNNAC 2 cut(s) 543, 1317
Hpy188I TCNGA 5 cut(s) 146, 676, 884, 1141, 1158
Hpy188III TCNNGA 7 cut(s) 134, 291, 359, 380, 641, 929, 1277
Hpy8I GTNNAC 2 cut(s) 543, 1317
HpyAV CCTTC 4 cut(s) 90, 715, 788, 979
HpyCH4III ACNGT 5 cut(s) 464, 473, 842, 1111, 1169
HpyCH4IV ACGT 2 cut(s) 261, 434
HpyCH4V TGCA 5 cut(s) 60, 768, 1075, 1124, 1188
HpyF10VI GCNNNNNNNGC 2 cut(s) 445, 513
HpyF3I CTNAG 1 cut(s) 981
HpySE526I ACGT 2 cut(s) 261, 434
Hsp92II CATG 7 cut(s) 78, 383, 694, 807, 837, 1063, 1192
HspAI GCGC 1 cut(s) 989
Ksp22I TGATCA 2 cut(s) 855, 1176
KspI CCGCGG 1 cut(s) 1244
LmnI GCTCC 1 cut(s) 504
LweI GCATC 1 cut(s) 495
MaeI CTAG 5 cut(s) 203, 236, 755, 830, 1034
MaeII ACGT 2 cut(s) 261, 434
MaeIII GTNAC 4 cut(s) 467, 665, 968, 1105
MboII GAAGA 9 cut(s) 108, 188, 361, 364, 770, 871, 897, 1039, 1279
MflI RGATCY 2 cut(s) 150, 783
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 1 cut(s) 548
MlyI GAGTC 3 cut(s) 296, 841, 1190
MmeI TCCRAC 2 cut(s) 178, 1080
MnlI CCTC 7 cut(s) 450, 453, 517, 641, 720, 1263, 1327
MseI TTAA 6 cut(s) 53, 329, 585, 741, 921, 1221
MslI CAYNNNNRTG 1 cut(s) 73
MspA1I CMGCKG 1 cut(s) 1243
MspI CCGG 2 cut(s) 419, 521
MspR9I CCNGG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 342
MvnI CGCG 2 cut(s) 642, 1243
MwoI GCNNNNNNNGC 2 cut(s) 445, 513
NcoI CCATGG 1 cut(s) 690
NdeI CATATG 1 cut(s) 607
NlaIII CATG 7 cut(s) 78, 383, 694, 807, 837, 1063, 1192
NlaIV GGNNCC 4 cut(s) 105, 152, 423, 897
NmeAIII GCCGAG 1 cut(s) 889
NmuCI GTSAC 2 cut(s) 467, 1105
NruI TCGCGA 1 cut(s) 642
NspI RCATGY 3 cut(s) 78, 837, 1063
PaeI GCATGC 1 cut(s) 837
PagI TCATGA 1 cut(s) 379
PciI ACATGT 2 cut(s) 74, 1059
PkrI GCNGC 2 cut(s) 1242, 1245
PleI GAGTC 3 cut(s) 295, 841, 1190
PmaCI CACGTG 1 cut(s) 435
PmlI CACGTG 1 cut(s) 435
PpsI GAGTC 3 cut(s) 295, 841, 1190
Ppu21I YACGTR 1 cut(s) 435
PscI ACATGT 2 cut(s) 74, 1059
Psp6I CCWGG 1 cut(s) 340
PspCI CACGTG 1 cut(s) 435
PspEI GGTNACC 1 cut(s) 467
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 4 cut(s) 105, 152, 423, 897
PspPI GGNCC 3 cut(s) 915, 1317, 1336
PsuI RGATCY 2 cut(s) 150, 783
RruI TCGCGA 1 cut(s) 642
RsaI GTAC 6 cut(s) 260, 272, 461, 779, 869, 1082
RsaNI GTAC 6 cut(s) 259, 271, 460, 778, 868, 1081
RseI CAYNNNNRTG 1 cut(s) 73
SacII CCGCGG 1 cut(s) 1244
SaqAI TTAA 6 cut(s) 53, 329, 585, 741, 921, 1221
SatI GCNGC 2 cut(s) 1241, 1244
Sau96I GGNCC 3 cut(s) 915, 1317, 1336
ScaI AGTACT 2 cut(s) 461, 869
SchI GAGTC 3 cut(s) 296, 841, 1190
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 1 cut(s) 303
SfaNI GCATC 1 cut(s) 495
Sfr303I CCGCGG 1 cut(s) 1244
SgrBI CCGCGG 1 cut(s) 1244
SinI GGWCC 1 cut(s) 1317
SmiMI CAYNNNNRTG 1 cut(s) 73
SmlI CTYRAG 3 cut(s) 359, 947, 1277
SmoI CTYRAG 3 cut(s) 359, 947, 1277
SphI GCATGC 1 cut(s) 837
Sse9I AATT 1 cut(s) 548
SsiI CCGC 4 cut(s) 446, 1241, 1243, 1295
SspI AATATT 1 cut(s) 18
SspMI CTAG 5 cut(s) 203, 236, 755, 830, 1034
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 2 cut(s) 120, 690
TaaI ACNGT 5 cut(s) 464, 473, 842, 1111, 1169
TaiI ACGT 2 cut(s) 264, 437
TaqI TCGA 2 cut(s) 799, 873
TasI AATT 1 cut(s) 548
TatI WGTACW 2 cut(s) 459, 867
TauI GCSGC 2 cut(s) 1243, 1246
Tru1I TTAA 6 cut(s) 53, 329, 585, 741, 921, 1221
Tru9I TTAA 6 cut(s) 53, 329, 585, 741, 921, 1221
TscAI CASTG 2 cut(s) 1168, 1190
TseFI GTSAC 2 cut(s) 467, 1105
Tsp45I GTSAC 2 cut(s) 467, 1105
TspDTI ATGAA 6 cut(s) 254, 626, 674, 1040, 1055, 1109
TspGWI ACGGA 1 cut(s) 888
TspRI CASTG 2 cut(s) 1168, 1190
VpaK11BI GGWCC 1 cut(s) 1317
XceI RCATGY 3 cut(s) 78, 837, 1063
XcmI CCANNNNNNNNNTGG 2 cut(s) 432, 612
XspI CTAG 5 cut(s) 203, 236, 755, 830, 1034
ZrmI AGTACT 2 cut(s) 461, 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.