AT3G61280

Lipopolysaccharide-modifying protein (InterPro IPR006598), Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004904
Physical Location & Seq
Forward (+)
22680960 .. 22683769
2810 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61280.1

Sequence Viewer

Length: 1611 bp
ATGAGAGAGAACACACAAGTGGCTCAATTCACAGAAGATCATCACCAGAGACATCAAACCCCAATAACTTGTTTAAGCTCTAAACTAGCAAAGATATGGACATTGTTCACCACCAAAATCTTCATCTTCGTCCTCTTCATCATCCTCCTTAGTGCTTCTGTCTCTTGGATGTATGCGTTTGTTTTAGGTGAGAATAAATTCCAAGTGACATCAATATTCACAAGAAACACCAAAAAAAGCACTCCCACAAAAACAACAACAACTACAGATATCCCCAAGATCGCCATCAAGATCCCATTAAACTGCACATCACTCAACAGCAACACAACACAAACATGTCCTTCAAATTACCCAACCAAGTTCGAACCAGCGATCTCTTCCTCGGAGACATGTCCTGACTACTTCAAGTGGATCCACCGAGACTTAAAGGTATGGCAAAAGACAGGGATCACAAGGGAAACACTAGAGAGAGCAAGACCAAATGCTCACTTCAGGATAGTGATAAAGTCAGGGAGATTGTACGTTCATCAATACGAGAAAGCATTTCAGACAAGAGATGTGTTCACAATCTGGGGAATACTTCAGCTTCTAAGGATGTATCCTGGTCAAATCCCTGACCTTGAGCTTCTCTTCCTCTGCCATGATAGACCCGCCATTTGGAAAAGAGACTTGAAGAAAAAACGAAAGGATACGTGGCCTCCTCCGCCGTTGTTTCACTACTGTGGTCACCGTGATGCATACGACATAGTTTTCCCTGATTGGAGCTTCTGGGGATGGCCTGAGCTGAATATAAAGGAGTGGAATAAATTATCTGTGGCACTAAAAGAAGGGAACAAAAAGGTGAAATGGGAAGATAGAGTTCCGTACGCTTATTGGAAAGGAAACCCTCATGTTTCTCCTATAAGAGGAGATCTTATGAGATGTAACTTCTCCGACAAGTATGATCCTATGGTTCGTCTCTATGTCCAGGATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGATCAATGTACTCATAGATATAAGATCTACATAGAAGGAAACGCATGGTCGGTGAGCGAAAAGTATATACTTTCGTGTGATAGTATGACTCTGTTGGTTAAACCAGAGTACTACGACTTTTTCTTCCGAAGTATGGTCCCAATGAAGCATTTTTGGCCTATTAGACAAAACAACAAATGTGGTGACCTCAAATTTGCAGTCGAATGGGGCAACAACAACACCGAAAAGGCACAAATCATAGGGAGACAAGGAAGTGAGTACATGATGAAGAACCTAAAGATGAAGTATGTGTATGATTACATGTTGTATGTGTTACAAGGCTATGGGAAATTGATGAAGTTGGATGTGACAGTGCCTGAAAATGCCACGGAGGTTTGTTCAGAGACGATGGCTTGTTCGATTACTGATGGTGGACGGATCAGGCAGTGCATGGACGACTCGTTGGTTATGTCTCCGAGTGTCAAGGCGGCTTGTGATTTGCCACCTTCTTATGGAGACTATGAGCTCAAGAAGTTTCGTAAGAAACAAGAAAGTGCGGAGAGAAAGGTTGAGCAGTGGACCAATAAGTATTGGAACTTGAGAGATCCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
Glyco_transf_90

Protein Analysis

536

Amino Acids

63.16

Weight (kDa)

9.21

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_90 PF05686 127 - 525 2.6e-180 Glycosyl transferase family 90
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 651, 704, 1484, 1553
AclWI GGATC 8 cut(s) 286, 406, 419, 455, 938, 1012, 1442, 1595
AcsI RAATTY 2 cut(s) 197, 1208
AcuI CTGAAG 2 cut(s) 475, 566
AfaI GTAC 5 cut(s) 521, 866, 1027, 1127, 1277
AfiI CCNNNNNNNGG 4 cut(s) 657, 905, 1150, 1508
AflIII ACRYGT 3 cut(s) 335, 389, 1317
AgsI TTSAA 3 cut(s) 345, 406, 673
AjnI CCWGG 2 cut(s) 601, 966
AleI CACNNNNGTG 2 cut(s) 17, 720
AluBI AGCT 6 cut(s) 78, 586, 625, 765, 784, 1522
AluI AGCT 6 cut(s) 78, 586, 625, 765, 784, 1522
Alw21I GWGCWC 1 cut(s) 1524
AlwI GGATC 8 cut(s) 286, 406, 419, 455, 938, 1012, 1442, 1595
AlwNI CAGNNNCTG 1 cut(s) 1373
AoxI GGCC 3 cut(s) 695, 776, 1172
ApoI RAATTY 2 cut(s) 197, 1208
ArsI GACNNNNNNTTYG 6 cut(s) 639, 671, 1193, 1200, 1225, 1232
Asp700I GAANNNNTTC 1 cut(s) 197
AspS9I GGNCC 2 cut(s) 1153, 1575
AsuHPI GGTGA 7 cut(s) 35, 100, 200, 719, 853, 1081, 1211
AsuII TTCGAA 1 cut(s) 363
AvaII GGWCC 2 cut(s) 1153, 1575
BamHI GGATCC 1 cut(s) 411
BanII GRGCYC 1 cut(s) 1524
Bbv12I GWGCWC 1 cut(s) 1524
BccI CCATC 4 cut(s) 293, 768, 1399, 1418
BceAI ACGGC 1 cut(s) 691
BciT130I CCWGG 2 cut(s) 603, 968
BciVI GTATCC 2 cut(s) 609, 682
BfaI CTAG 3 cut(s) 86, 464, 1013
BfmI CTRYAG 1 cut(s) 264
BfuI GTATCC 2 cut(s) 609, 682
BglII AGATCT 2 cut(s) 910, 1041
BisI GCNGC 1 cut(s) 1485
BlsI GCNGC 1 cut(s) 1486
BmcAI AGTACT 1 cut(s) 1127
Bme1390I CCNGG 2 cut(s) 603, 968
Bme18I GGWCC 2 cut(s) 1153, 1575
BmgT120I GGNCC 2 cut(s) 1153, 1575
BmiI GGNNCC 2 cut(s) 413, 1155
BmrFI CCNGG 2 cut(s) 603, 968
BmsI GCATC 1 cut(s) 724
Bpu10I CCTNAGC 1 cut(s) 780
Bpu14I TTCGAA 1 cut(s) 363
BpuEI CTTGAG 2 cut(s) 641, 1508
BsaAI YACGTR 1 cut(s) 693
BsaBI GATNNNNATC 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 381, 1383
BsaXI ACNNNNNCTCC 2 cut(s) 682, 712
Bsc4I CCNNNNNNNGG 4 cut(s) 657, 905, 1150, 1508
Bse8I GATNNNNATC 1 cut(s) 284
BseBI CCWGG 2 cut(s) 603, 968
BseDI CCNNGG 2 cut(s) 381, 1383
BseGI GGATG 5 cut(s) 141, 174, 600, 779, 1366
BseJI GATNNNNATC 1 cut(s) 284
BseLI CCNNNNNNNGG 4 cut(s) 657, 905, 1150, 1508
BseMII CTCAG 1 cut(s) 771
BseRI GAGGAG 3 cut(s) 690, 921, 991
BsgI GTGCAG 1 cut(s) 289
BshFI GGCC 3 cut(s) 697, 778, 1174
BsiHKAI GWGCWC 1 cut(s) 1524
BsiWI CGTACG 1 cut(s) 864
BslFI GGGAC 1 cut(s) 1139
BslI CCNNNNNNNGG 4 cut(s) 657, 905, 1150, 1508
BsmBI CGTCTC 2 cut(s) 962, 1394
BsmFI GGGAC 1 cut(s) 1139
BsnI GGCC 3 cut(s) 697, 778, 1174
Bsp119I TTCGAA 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 1524
BspACI CCGC 4 cut(s) 651, 704, 1484, 1553
BspANI GGCC 3 cut(s) 697, 778, 1174
BspCNI CTCAG 1 cut(s) 772
BspLI GGNNCC 2 cut(s) 413, 1155
BspPI GGATC 8 cut(s) 286, 406, 419, 455, 938, 1012, 1442, 1595
BspT104I TTCGAA 1 cut(s) 363
BssECI CCNNGG 2 cut(s) 381, 1383
Bst2UI CCWGG 2 cut(s) 603, 968
Bst4CI ACNGT 3 cut(s) 722, 731, 1369
Bst6I CTCTTC 3 cut(s) 140, 382, 635
BstBAI YACGTR 1 cut(s) 693
BstBI TTCGAA 1 cut(s) 363
BstDEI CTNAG 3 cut(s) 149, 590, 780
BstDSI CCRYGG 1 cut(s) 1383
BstEII GGTNACC 2 cut(s) 725, 1199
BstENI CCTNNNNNAGG 1 cut(s) 903
BstF5I GGATG 5 cut(s) 141, 174, 600, 779, 1366
BstMWI GCNNNNNNNGC 2 cut(s) 703, 1171
BstNI CCWGG 2 cut(s) 603, 968
BstNSI RCATGY 3 cut(s) 339, 393, 1321
BstPI GGTNACC 2 cut(s) 725, 1199
BstSCI CCNGG 2 cut(s) 601, 966
BstSFI CTRYAG 1 cut(s) 264
BstX2I RGATCY 5 cut(s) 291, 411, 910, 1041, 1600
BstYI RGATCY 5 cut(s) 291, 411, 910, 1041, 1600
BsuI GTATCC 2 cut(s) 609, 682
BsuRI GGCC 3 cut(s) 697, 778, 1174
BtgI CCRYGG 1 cut(s) 1383
BtsCI GGATG 5 cut(s) 141, 174, 600, 779, 1366
BtsI GCAGTG 2 cut(s) 1448, 1577
BtsIMutI CAGTG 3 cut(s) 1374, 1448, 1577
CaiI CAGNNNCTG 1 cut(s) 1373
Cfr13I GGNCC 2 cut(s) 1153, 1575
Csp6I GTAC 5 cut(s) 520, 865, 1026, 1126, 1276
CspCI CAANNNNNGTGG 2 cut(s) 1177, 1212
CviAII CATG 8 cut(s) 336, 390, 641, 890, 1062, 1279, 1318, 1447
CviQI GTAC 5 cut(s) 520, 865, 1026, 1126, 1276
DdeI CTNAG 3 cut(s) 149, 590, 780
Eam1104I CTCTTC 3 cut(s) 140, 382, 635
EarI CTCTTC 3 cut(s) 140, 382, 635
EciI GGCGGA 1 cut(s) 693
Ecl136II GAGCTC 1 cut(s) 1522
Eco24I GRGCYC 1 cut(s) 1524
Eco32I GATATC 1 cut(s) 271
Eco47I GGWCC 2 cut(s) 1153, 1575
Eco53kI GAGCTC 1 cut(s) 1522
Eco57I CTGAAG 2 cut(s) 475, 566
Eco91I GGTNACC 2 cut(s) 725, 1199
EcoICRI GAGCTC 1 cut(s) 1522
EcoNI CCTNNNNNAGG 1 cut(s) 903
EcoO65I GGTNACC 2 cut(s) 725, 1199
EcoRII CCWGG 2 cut(s) 601, 966
EcoRV GATATC 1 cut(s) 271
EcoT22I ATGCAT 1 cut(s) 739
EcoT38I GRGCYC 1 cut(s) 1524
Esp3I CGTCTC 2 cut(s) 962, 1394
FaeI CATG 8 cut(s) 339, 393, 644, 893, 1065, 1282, 1321, 1450
FaqI GGGAC 1 cut(s) 1139
FatI CATG 8 cut(s) 335, 389, 640, 889, 1061, 1278, 1317, 1446
FauI CCCGC 1 cut(s) 658
Fnu4HI GCNGC 1 cut(s) 1485
FokI GGATG 5 cut(s) 128, 181, 607, 786, 1373
FriOI GRGCYC 1 cut(s) 1524
Fsp4HI GCNGC 1 cut(s) 1485
FspBI CTAG 3 cut(s) 86, 464, 1013
GluI GCNGC 1 cut(s) 1485
HaeIII GGCC 3 cut(s) 697, 778, 1174
Hin1II CATG 8 cut(s) 339, 393, 644, 893, 1065, 1282, 1321, 1450
HinfI GANTC 2 cut(s) 1105, 1454
HphI GGTGA 7 cut(s) 35, 100, 200, 719, 853, 1081, 1211
Hpy166II GTNNAC 4 cut(s) 108, 564, 1430, 1575
Hpy188I TCNGA 7 cut(s) 385, 549, 934, 1001, 1145, 1399, 1473
Hpy188III TCNNGA 4 cut(s) 289, 395, 493, 1525
Hpy8I GTNNAC 4 cut(s) 108, 564, 1430, 1575
HpyAV CCTTC 4 cut(s) 351, 821, 1046, 1512
HpyCH4III ACNGT 3 cut(s) 722, 731, 1369
HpyCH4IV ACGT 2 cut(s) 522, 692
HpyCH4V TGCA 4 cut(s) 306, 737, 1214, 1446
HpyF10VI GCNNNNNNNGC 2 cut(s) 703, 1171
HpyF3I CTNAG 3 cut(s) 149, 590, 780
HpySE526I ACGT 2 cut(s) 522, 692
Hsp92II CATG 8 cut(s) 339, 393, 644, 893, 1065, 1282, 1321, 1450
LmnI GCTCC 1 cut(s) 762
LweI GCATC 1 cut(s) 724
MaeI CTAG 3 cut(s) 86, 464, 1013
MaeII ACGT 2 cut(s) 522, 692
MaeIII GTNAC 6 cut(s) 205, 725, 923, 1199, 1329, 1363
MflI RGATCY 5 cut(s) 291, 411, 910, 1041, 1600
MhlI GDGCHC 1 cut(s) 1524
MluCI AATT 6 cut(s) 26, 197, 346, 806, 1208, 1346
MlyI GAGTC 2 cut(s) 1099, 1448
MmeI TCCRAC 2 cut(s) 957, 1338
Mph1103I ATGCAT 1 cut(s) 739
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 4 cut(s) 74, 299, 425, 1116
MslI CAYNNNNRTG 4 cut(s) 17, 334, 720, 732
MspR9I CCNGG 2 cut(s) 603, 968
MvaI CCWGG 2 cut(s) 603, 968
MwoI GCNNNNNNNGC 2 cut(s) 703, 1171
NlaIII CATG 8 cut(s) 339, 393, 644, 893, 1065, 1282, 1321, 1450
NlaIV GGNNCC 2 cut(s) 413, 1155
NmuCI GTSAC 4 cut(s) 205, 725, 1199, 1363
NsiI ATGCAT 1 cut(s) 739
NspI RCATGY 3 cut(s) 339, 393, 1321
NspV TTCGAA 1 cut(s) 363
OliI CACNNNNGTG 2 cut(s) 17, 720
PciI ACATGT 3 cut(s) 335, 389, 1317
PdmI GAANNNNTTC 1 cut(s) 197
Pfl23II CGTACG 1 cut(s) 864
PfoI TCCNGGA 1 cut(s) 966
PkrI GCNGC 1 cut(s) 1486
PleI GAGTC 2 cut(s) 1099, 1448
PpsI GAGTC 2 cut(s) 1099, 1448
Ppu21I YACGTR 1 cut(s) 693
PscI ACATGT 3 cut(s) 335, 389, 1317
Psp124BI GAGCTC 1 cut(s) 1524
Psp6I CCWGG 2 cut(s) 601, 966
PspEI GGTNACC 2 cut(s) 725, 1199
PspGI CCWGG 2 cut(s) 601, 966
PspLI CGTACG 1 cut(s) 864
PspN4I GGNNCC 2 cut(s) 413, 1155
PspPI GGNCC 2 cut(s) 1153, 1575
PstNI CAGNNNCTG 1 cut(s) 1373
PsuI RGATCY 5 cut(s) 291, 411, 910, 1041, 1600
RsaI GTAC 5 cut(s) 521, 866, 1027, 1127, 1277
RsaNI GTAC 5 cut(s) 520, 865, 1026, 1126, 1276
RseI CAYNNNNRTG 4 cut(s) 17, 334, 720, 732
SacI GAGCTC 1 cut(s) 1524
SaqAI TTAA 4 cut(s) 74, 299, 425, 1116
SatI GCNGC 1 cut(s) 1485
Sau96I GGNCC 2 cut(s) 1153, 1575
ScaI AGTACT 1 cut(s) 1127
SchI GAGTC 2 cut(s) 1099, 1448
ScrFI CCNGG 2 cut(s) 603, 968
SduI GDGCHC 1 cut(s) 1524
SfaNI GCATC 1 cut(s) 724
SfcI CTRYAG 1 cut(s) 264
SfuI TTCGAA 1 cut(s) 363
SinI GGWCC 2 cut(s) 1153, 1575
SmiMI CAYNNNNRTG 4 cut(s) 17, 334, 720, 732
SmlI CTYRAG 3 cut(s) 620, 1523, 1594
SmoI CTYRAG 3 cut(s) 620, 1523, 1594
Sse9I AATT 6 cut(s) 26, 197, 346, 806, 1208, 1346
SsiI CCGC 4 cut(s) 651, 704, 1484, 1553
SspI AATATT 1 cut(s) 216
SspMI CTAG 3 cut(s) 86, 464, 1013
SstI GAGCTC 1 cut(s) 1524
StyD4I CCNGG 2 cut(s) 601, 966
TaaI ACNGT 3 cut(s) 722, 731, 1369
TaiI ACGT 2 cut(s) 525, 695
TaqI TCGA 4 cut(s) 363, 1007, 1218, 1415
TasI AATT 6 cut(s) 26, 197, 346, 806, 1208, 1346
TatI WGTACW 3 cut(s) 1025, 1125, 1275
TauI GCSGC 1 cut(s) 1487
Tru1I TTAA 4 cut(s) 74, 299, 425, 1116
Tru9I TTAA 4 cut(s) 74, 299, 425, 1116
TscAI CASTG 3 cut(s) 1374, 1448, 1577
TseFI GTSAC 4 cut(s) 205, 725, 1199, 1363
Tsp45I GTSAC 4 cut(s) 205, 725, 1199, 1363
TspDTI ATGAA 7 cut(s) 112, 127, 515, 1175, 1298, 1313, 1367
TspGWI ACGGA 3 cut(s) 852, 1400, 1447
TspRI CASTG 3 cut(s) 1374, 1448, 1577
VpaK11BI GGWCC 2 cut(s) 1153, 1575
XagI CCTNNNNNAGG 1 cut(s) 903
XapI RAATTY 2 cut(s) 197, 1208
XceI RCATGY 3 cut(s) 339, 393, 1321
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 3 cut(s) 86, 464, 1013
ZrmI AGTACT 1 cut(s) 1127
Zsp2I ATGCAT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.