Rw1G021990

O-glucosyltransferase rumi homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004904
Physical Location & Seq
Forward (+)
46526614 .. 46529721
3108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G021990.1

Sequence Viewer

Length: 1575 bp
ATGAAGAGGAACAATGCGAAGCATTTGTATGATTTCTTGGACCGGTCAGGATTGCATAGGCATTTTGCAGGATCAAGTTGGCAGCCGCCGAAGAAGAGCAGCGGGACATTTACGTCTGTAGCCTTCTTGTTCTTGTTGTTGTTCTTTGTTGCTGGACTGGTTTTTGCCGGCTGGAGTATTGATATTGACTCTTTTATGTTTTCAGGTGCCTCTTCTAACAAATCAATCCCAACACCAACAACAATACCCAGAACCATTGAATTCCCACTCCAATGTGCCACTGGAATTAATGTGACACAAACTTGTCCAAGAACCTACCCTAGCAAACACAACCCTGTAAGTCCTAACCTTCCATCAAATGTCACATGCCCATCATACTTCCGATGGATCCACGAAGATCTACGGCCATGGAGAGAGACGGGAATCACGAGGGACATGGTGGAGCGGGCGCACAGGACCGCACATTTTAGGCTCGTGATTGTGGACGGCAAGGCCTACCTAGAGAAGTATAGGCAGTCCATACAAACTAGGGACATGTTTACATTATGGGGTATTTTGCAGCTTCTAAGGGTATACCCTGGTAGATTGCCTGACTTGGAGATCATGTTCGACTGTGATGATCGGCCTGTGGTCCGATCAAAAGACTTTCAGGGACCAAATGCAGGCCCGCCGCCTGTTTTCCGATACTGTGCTGATGAGGGCAGCTTGGACATTGTGTTCCCAGATTGGTCTTTTTGGGGCTGGGCTGAGATCAATATAAAGCCCTGGAAAAACTTATTGCCAAGCATAAAGGAAGGCAATAAAAGAACGAAGTGGAAGGATAGGGTGCCCTATGCTTACTGGAAAGGTAACCCAAATGTGGCTCCAACCAGGAAAGACCTTCTCAAATGCAATGTTTCAGACCAAAATGACTGGAATACACTCTTATACATACAGAATTGGGAGAAAGAATCCAAAGAAGGGTACAAGCAGTCCAGCTTAGAAGATCAATGCAAGCACAGATACAAAATTTATGTAGAGGGATGGGCATGGTCTGTGAGTGAAAAATACATACTGGCATGTGATTCTATGACCTTATATGTAAACCCTCGTTATTACGATTTCTACATGAGAGGCATGCTACCATTGGAGCACTATTGGCCCATTAGGGACAACAGCAAGTGCACTTCTCTCAAATTTGCTGTGGAATGGGGCAATAATCACACGAATAAGGCAGAGGCAATTGGGGAGGCAGCAAGCAACTTCATACAAGAAGATCTGAAGATGGACTATGTGTATGACTACATGTTTCATGTACTGAATGAATATGCAAAGCTCTTGAAATTCAAACCGACGATACCTCCCAACGCATCGGAACTATGTTCTGAAACATTGGCATGCCCTGCAACTGGCACATGGAAGAAATTCATGAAGGAGTCCATGGTTATGTCTCCTAGTGATGAAATCCCATGTTCTTTGCCTCCTCCATATGATCCTCAAGCTCTACGTGATTTTCTTGAGAGAAAAGCCAACTCAACTAGGCAAGTGGAAGCTTGGGAAAATGAATATTGGCAGAGTTCTAATAAAAAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
Glyco_transf_90

Protein Analysis

524

Amino Acids

61.02

Weight (kDa)

8.62

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_90 PF05686 120 - 513 1.8e-196 Glycosyl transferase family 90
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 112
AccB1I GGYRCC 2 cut(s) 206, 826
AccBSI CCGCTC 1 cut(s) 445
AccI GTMKAC 1 cut(s) 573
AciI CCGC 6 cut(s) 86, 102, 445, 459, 668, 671
AclWI GGATC 4 cut(s) 79, 382, 395, 1466
AcoI YGGCCR 1 cut(s) 404
AcsI RAATTY 5 cut(s) 260, 1008, 1175, 1322, 1403
AcuI CTGAAG 1 cut(s) 1280
AfaI GTAC 2 cut(s) 965, 1296
AfiI CCNNNNNNNGG 4 cut(s) 662, 859, 960, 1388
AflIII ACRYGT 2 cut(s) 534, 1284
AgeI ACCGGT 1 cut(s) 42
AgsI TTSAA 3 cut(s) 260, 1321, 1327
AjnI CCWGG 3 cut(s) 577, 764, 869
AloI GAACNNNNNNTCC 4 cut(s) 590, 622, 701, 733
AluBI AGCT 6 cut(s) 562, 705, 978, 1315, 1481, 1532
AluI AGCT 6 cut(s) 562, 705, 978, 1315, 1481, 1532
Alw21I GWGCWC 2 cut(s) 1134, 1166
Alw26I GTCTC 2 cut(s) 410, 1434
Alw44I GTGCAC 1 cut(s) 1162
AlwI GGATC 4 cut(s) 79, 382, 395, 1466
AoxI GGCC 5 cut(s) 404, 492, 623, 664, 1139
ApaLI GTGCAC 1 cut(s) 1162
ApeKI GCWGC 5 cut(s) 82, 99, 559, 702, 1232
ApoI RAATTY 5 cut(s) 260, 1008, 1175, 1322, 1403
AseI ATTAAT 1 cut(s) 288
AsiGI ACCGGT 1 cut(s) 42
Asp700I GAANNNNTTC 1 cut(s) 1403
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 6 cut(s) 40, 456, 631, 653, 665, 1140
AvaII GGWCC 4 cut(s) 40, 456, 631, 653
BaeGI GKGCMC 2 cut(s) 831, 1166
BamHI GGATCC 1 cut(s) 387
BanI GGYRCC 2 cut(s) 206, 826
BauI CACGAG 2 cut(s) 427, 473
Bbv12I GWGCWC 2 cut(s) 1134, 1166
BbvI GCAGC 5 cut(s) 94, 111, 571, 714, 1244
BccI CCATC 5 cut(s) 361, 378, 379, 1017, 1258
BceAI ACGGC 2 cut(s) 419, 502
BciT130I CCWGG 3 cut(s) 579, 766, 871
BcoDI GTCTC 2 cut(s) 410, 1434
BfaI CTAG 5 cut(s) 321, 500, 528, 1434, 1518
BfmI CTRYAG 1 cut(s) 117
BglII AGATCT 2 cut(s) 397, 1255
BisI GCNGC 7 cut(s) 83, 86, 100, 560, 671, 703, 1233
BlsI GCNGC 7 cut(s) 84, 87, 101, 561, 672, 704, 1234
Bme1390I CCNGG 3 cut(s) 579, 766, 871
Bme18I GGWCC 4 cut(s) 40, 456, 631, 653
BmgT120I GGNCC 6 cut(s) 40, 456, 631, 653, 665, 1140
BmiI GGNNCC 5 cut(s) 208, 389, 654, 828, 864
BmrFI CCNGG 3 cut(s) 579, 766, 871
BmsI GCATC 1 cut(s) 1358
BpmI CTGGAG 1 cut(s) 193
BpuEI CTTGAG 2 cut(s) 1461, 1517
BsaAI YACGTR 1 cut(s) 1487
BsaJI CCNNGG 4 cut(s) 407, 577, 764, 1419
BsaWI WCCGGW 1 cut(s) 42
BsaXI ACNNNNNCTCC 4 cut(s) 590, 620, 1324, 1354
Bsc4I CCNNNNNNNGG 4 cut(s) 662, 859, 960, 1388
Bse118I RCCGGY 2 cut(s) 42, 167
Bse1I ACTGG 6 cut(s) 162, 286, 845, 917, 1059, 1393
Bse3DI GCAATG 1 cut(s) 898
BseBI CCWGG 3 cut(s) 579, 766, 871
BseDI CCNNGG 4 cut(s) 407, 577, 764, 1419
BseGI GGATG 1 cut(s) 1028
BseLI CCNNNNNNNGG 4 cut(s) 662, 859, 960, 1388
BseMI GCAATG 1 cut(s) 898
BseMII CTCAG 1 cut(s) 738
BseNI ACTGG 6 cut(s) 162, 286, 845, 917, 1059, 1393
BseRI GAGGAG 1 cut(s) 1452
BseSI GKGCMC 2 cut(s) 831, 1166
BseXI GCAGC 5 cut(s) 94, 111, 571, 714, 1244
BseYI CCCAGC 1 cut(s) 741
BshFI GGCC 5 cut(s) 406, 494, 625, 666, 1141
BshNI GGYRCC 2 cut(s) 206, 826
BshTI ACCGGT 1 cut(s) 42
BsiHKAI GWGCWC 2 cut(s) 1134, 1166
BsiSI CCGG 2 cut(s) 43, 168
BslFI GGGAC 5 cut(s) 118, 446, 545, 666, 1163
BslI CCNNNNNNNGG 4 cut(s) 662, 859, 960, 1388
BsmAI GTCTC 2 cut(s) 410, 1434
BsmBI CGTCTC 1 cut(s) 410
BsmFI GGGAC 5 cut(s) 118, 446, 545, 666, 1163
BsnI GGCC 5 cut(s) 406, 494, 625, 666, 1141
Bsp1286I GDGCHC 3 cut(s) 831, 1134, 1166
Bsp19I CCATGG 2 cut(s) 407, 1419
BspACI CCGC 6 cut(s) 86, 102, 445, 459, 668, 671
BspANI GGCC 5 cut(s) 406, 494, 625, 666, 1141
BspCNI CTCAG 1 cut(s) 739
BspHI TCATGA 1 cut(s) 1407
BspLI GGNNCC 5 cut(s) 208, 389, 654, 828, 864
BspPI GGATC 4 cut(s) 79, 382, 395, 1466
BspQI GCTCTTC 1 cut(s) 89
BspT107I GGYRCC 2 cut(s) 206, 826
BsrBI CCGCTC 1 cut(s) 445
BsrDI GCAATG 1 cut(s) 898
BsrFI RCCGGY 2 cut(s) 42, 167
BsrI ACTGG 6 cut(s) 162, 286, 845, 917, 1059, 1393
BssAI RCCGGY 2 cut(s) 42, 167
BssECI CCNNGG 4 cut(s) 407, 577, 764, 1419
BssNAI GTATAC 1 cut(s) 574
BssSI CACGAG 2 cut(s) 427, 473
BssT1I CCWWGG 2 cut(s) 407, 1419
Bst1107I GTATAC 1 cut(s) 574
Bst2BI CACGAG 2 cut(s) 427, 473
Bst2UI CCWGG 3 cut(s) 579, 766, 871
Bst4CI ACNGT 2 cut(s) 614, 689
Bst6I CTCTTC 2 cut(s) 89, 217
BstAPI GCANNNNNTGC 1 cut(s) 1382
BstBAI YACGTR 1 cut(s) 1487
BstC8I GCNNGC 8 cut(s) 169, 447, 664, 668, 995, 1118, 1237, 1378
BstDEI CTNAG 3 cut(s) 566, 747, 979
BstDSI CCRYGG 2 cut(s) 407, 1419
BstEII GGTNACC 1 cut(s) 848
BstF5I GGATG 1 cut(s) 1028
BstHHI GCGC 1 cut(s) 451
BstMAI GTCTC 2 cut(s) 410, 1434
BstMWI GCNNNNNNNGC 2 cut(s) 1138, 1382
BstNI CCWGG 3 cut(s) 579, 766, 871
BstNSI RCATGY 6 cut(s) 369, 538, 1062, 1120, 1288, 1380
BstPI GGTNACC 1 cut(s) 848
BstSCI CCNGG 3 cut(s) 577, 764, 869
BstSFI CTRYAG 1 cut(s) 117
BstSLI GKGCMC 2 cut(s) 831, 1166
BstV1I GCAGC 5 cut(s) 94, 111, 571, 714, 1244
BstX2I RGATCY 3 cut(s) 387, 397, 1255
BstYI RGATCY 3 cut(s) 387, 397, 1255
BstZ17I GTATAC 1 cut(s) 574
BsuRI GGCC 5 cut(s) 406, 494, 625, 666, 1141
BtgI CCRYGG 2 cut(s) 407, 1419
BtsCI GGATG 1 cut(s) 1028
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 8 cut(s) 169, 447, 664, 668, 995, 1118, 1237, 1378
CciI TCATGA 1 cut(s) 1407
CfoI GCGC 1 cut(s) 451
Cfr10I RCCGGY 2 cut(s) 42, 167
Cfr13I GGNCC 6 cut(s) 40, 456, 631, 653, 665, 1140
Csp6I GTAC 2 cut(s) 964, 1295
CspAI ACCGGT 1 cut(s) 42
CviQI GTAC 2 cut(s) 964, 1295
DdeI CTNAG 3 cut(s) 566, 747, 979
DrdI GACNNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 404
Eam1104I CTCTTC 2 cut(s) 89, 217
EarI CTCTTC 2 cut(s) 89, 217
Eco130I CCWWGG 2 cut(s) 407, 1419
Eco147I AGGCCT 1 cut(s) 494
Eco47I GGWCC 4 cut(s) 40, 456, 631, 653
Eco57I CTGAAG 1 cut(s) 1280
Eco91I GGTNACC 1 cut(s) 848
EcoO65I GGTNACC 1 cut(s) 848
EcoRI GAATTC 1 cut(s) 260
EcoRII CCWGG 3 cut(s) 577, 764, 869
EcoT14I CCWWGG 2 cut(s) 407, 1419
ErhI CCWWGG 2 cut(s) 407, 1419
Esp3I CGTCTC 1 cut(s) 410
FaqI GGGAC 5 cut(s) 118, 446, 545, 666, 1163
FauI CCCGC 3 cut(s) 95, 438, 675
FauNDI CATATG 1 cut(s) 1468
FblI GTMKAC 1 cut(s) 573
Fnu4HI GCNGC 7 cut(s) 83, 86, 100, 560, 671, 703, 1233
FokI GGATG 1 cut(s) 1035
Fsp4HI GCNGC 7 cut(s) 83, 86, 100, 560, 671, 703, 1233
FspBI CTAG 5 cut(s) 321, 500, 528, 1434, 1518
GlaI GCGC 1 cut(s) 450
GluI GCNGC 7 cut(s) 83, 86, 100, 560, 671, 703, 1233
GsaI CCCAGC 1 cut(s) 745
GsuI CTGGAG 1 cut(s) 193
HaeIII GGCC 5 cut(s) 406, 494, 625, 666, 1141
HapII CCGG 2 cut(s) 43, 168
HhaI GCGC 1 cut(s) 451
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HindIII AAGCTT 1 cut(s) 1530
HinfI GANTC 5 cut(s) 188, 423, 950, 1064, 1415
HpaII CCGG 2 cut(s) 43, 168
Hpy166II GTNNAC 5 cut(s) 484, 540, 574, 1084, 1164
Hpy188I TCNGA 7 cut(s) 383, 635, 683, 901, 1260, 1354, 1366
Hpy188III TCNNGA 6 cut(s) 48, 427, 475, 1318, 1408, 1496
Hpy8I GTNNAC 5 cut(s) 484, 540, 574, 1084, 1164
Hpy99I CGWCG 1 cut(s) 1336
HpyAV CCTTC 7 cut(s) 133, 359, 788, 811, 890, 953, 1405
HpyCH4III ACNGT 2 cut(s) 614, 689
HpyCH4IV ACGT 2 cut(s) 113, 1486
HpyCH4V TGCA 9 cut(s) 55, 68, 559, 662, 891, 993, 1164, 1310, 1385
HpyF10VI GCNNNNNNNGC 2 cut(s) 1138, 1382
HpyF3I CTNAG 3 cut(s) 566, 747, 979
HpySE526I ACGT 2 cut(s) 113, 1486
HspAI GCGC 1 cut(s) 449
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
LguI GCTCTTC 1 cut(s) 89
LmnI GCTCC 3 cut(s) 442, 868, 1129
Lsp1109I GCAGC 5 cut(s) 94, 111, 571, 714, 1244
LweI GCATC 1 cut(s) 1358
MaeI CTAG 5 cut(s) 321, 500, 528, 1434, 1518
MaeII ACGT 2 cut(s) 113, 1486
MaeIII GTNAC 3 cut(s) 292, 361, 848
MbiI CCGCTC 1 cut(s) 445
MboII GAAGA 9 cut(s) 16, 103, 106, 204, 407, 995, 1265, 1273, 1411
MfeI CAATTG 1 cut(s) 1221
MflI RGATCY 3 cut(s) 387, 397, 1255
MhlI GDGCHC 3 cut(s) 831, 1134, 1166
MluCI AATT 8 cut(s) 260, 285, 937, 1008, 1175, 1221, 1322, 1403
MlyI GAGTC 2 cut(s) 182, 1424
MmeI TCCRAC 1 cut(s) 890
MroNI GCCGGC 1 cut(s) 167
MroXI GAANNNNTTC 1 cut(s) 1403
MseI TTAA 1 cut(s) 288
MslI CAYNNNNRTG 4 cut(s) 27, 271, 1375, 1424
MspA1I CMGCKG 1 cut(s) 102
MspI CCGG 2 cut(s) 43, 168
MspR9I CCNGG 3 cut(s) 579, 766, 871
MunI CAATTG 1 cut(s) 1221
MvaI CCWGG 3 cut(s) 579, 766, 871
MwoI GCNNNNNNNGC 2 cut(s) 1138, 1382
NaeI GCCGGC 1 cut(s) 169
NcoI CCATGG 2 cut(s) 407, 1419
NdeI CATATG 1 cut(s) 1468
NgoMIV GCCGGC 1 cut(s) 167
NlaIV GGNNCC 5 cut(s) 208, 389, 654, 828, 864
NmuCI GTSAC 2 cut(s) 292, 361
NspI RCATGY 6 cut(s) 369, 538, 1062, 1120, 1288, 1380
PaeI GCATGC 2 cut(s) 1120, 1380
PagI TCATGA 1 cut(s) 1407
PceI AGGCCT 1 cut(s) 494
PciI ACATGT 2 cut(s) 534, 1284
PciSI GCTCTTC 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 425
PdiI GCCGGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 1403
PfeI GAWTC 3 cut(s) 423, 950, 1064
PinAI ACCGGT 1 cut(s) 42
PkrI GCNGC 7 cut(s) 84, 87, 101, 561, 672, 704, 1234
PleI GAGTC 2 cut(s) 182, 1423
PpsI GAGTC 2 cut(s) 182, 1423
Ppu21I YACGTR 1 cut(s) 1487
PscI ACATGT 2 cut(s) 534, 1284
PshBI ATTAAT 1 cut(s) 288
Psp6I CCWGG 3 cut(s) 577, 764, 869
PspEI GGTNACC 1 cut(s) 848
PspFI CCCAGC 1 cut(s) 741
PspGI CCWGG 3 cut(s) 577, 764, 869
PspN4I GGNNCC 5 cut(s) 208, 389, 654, 828, 864
PspPI GGNCC 6 cut(s) 40, 456, 631, 653, 665, 1140
PsuI RGATCY 3 cut(s) 387, 397, 1255
RsaI GTAC 2 cut(s) 965, 1296
RsaNI GTAC 2 cut(s) 964, 1295
RseI CAYNNNNRTG 4 cut(s) 27, 271, 1375, 1424
SapI GCTCTTC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 7 cut(s) 83, 86, 100, 560, 671, 703, 1233
Sau96I GGNCC 6 cut(s) 40, 456, 631, 653, 665, 1140
SchI GAGTC 2 cut(s) 182, 1424
ScrFI CCNGG 3 cut(s) 579, 766, 871
SduI GDGCHC 3 cut(s) 831, 1134, 1166
SfaNI GCATC 1 cut(s) 1358
SfcI CTRYAG 1 cut(s) 117
SinI GGWCC 4 cut(s) 40, 456, 631, 653
SmiMI CAYNNNNRTG 4 cut(s) 27, 271, 1375, 1424
SmlI CTYRAG 2 cut(s) 1476, 1496
SmoI CTYRAG 2 cut(s) 1476, 1496
SphI GCATGC 2 cut(s) 1120, 1380
Sse9I AATT 8 cut(s) 260, 285, 937, 1008, 1175, 1221, 1322, 1403
SseBI AGGCCT 1 cut(s) 494
SsiI CCGC 6 cut(s) 86, 102, 445, 459, 668, 671
SspI AATATT 1 cut(s) 1547
SspMI CTAG 5 cut(s) 321, 500, 528, 1434, 1518
StuI AGGCCT 1 cut(s) 494
StyD4I CCNGG 3 cut(s) 577, 764, 869
StyI CCWWGG 2 cut(s) 407, 1419
TaaI ACNGT 2 cut(s) 614, 689
TaiI ACGT 2 cut(s) 116, 1489
TaqI TCGA 1 cut(s) 609
TasI AATT 8 cut(s) 260, 285, 937, 1008, 1175, 1221, 1322, 1403
TatI WGTACW 1 cut(s) 1294
TauI GCSGC 2 cut(s) 88, 673
TfiI GAWTC 3 cut(s) 423, 950, 1064
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 2 cut(s) 292, 361
TseI GCWGC 5 cut(s) 82, 99, 559, 702, 1232
Tsp45I GTSAC 2 cut(s) 292, 361
TspDTI ATGAA 8 cut(s) 17, 1234, 1280, 1317, 1396, 1424, 1455, 1557
TspRI CASTG 1 cut(s) 286
VneI GTGCAC 1 cut(s) 1162
VpaK11BI GGWCC 4 cut(s) 40, 456, 631, 653
VspI ATTAAT 1 cut(s) 288
XapI RAATTY 5 cut(s) 260, 1008, 1175, 1322, 1403
XceI RCATGY 6 cut(s) 369, 538, 1062, 1120, 1288, 1380
XcmI CCANNNNNNNNNTGG 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 573
XmnI GAANNNNTTC 1 cut(s) 1403
XspI CTAG 5 cut(s) 321, 500, 528, 1434, 1518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.