Rh1AG252100

O-glucosyltransferase rumi homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004904
Physical Location & Seq
Forward (+)
46743547 .. 46746600
3054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG252100.1

Sequence Viewer

Length: 1575 bp
ATGAAAAGGAACAATGCGAAGCATTTGTATGATTTCTTGGACGGGTCAGGGTTGCATAGGCATTTTGCAGGATCAAGTTGGCAGCCACCGAAGAAGAGAACCGCAACATTTACAACTCTAGCCTTCTTGTTCTTGTTGTTCTTCTTTGTTGCTGCTCTGGCATTTGCCGGCTGGAGTGTTGAAATTGACTCTTTTATATTTTCAGGTGCTTCTTCTAACAAATCAATCCCAACACCAACAACAATACCCGAAACCATTGAATTCCCACTCCAATGTGCCACAGGAATTAATGTGACACAAACTTGTCCAAGAACCTACCCTAGCAAACACAACCCTACAAGTCCCAACCTTCCATCAAATGTCACATGCCCATCATACTTCCAATGGATCCACGAAGATCTACGGCCATGGAGAGAAACAGGAATCACAAGGGACATGGTGGAGCGGGCGCGCAGGACCGCACATTTTAGGCTCATGATCGTGGACGGCAAGGCCTACCTGGAGAAGTATAGGCAGTCCATACAAACTAGGGACATGTTTACATTATGGGGGATTTTGCAACTTCTAAGGGTATACCCTGGTAGATTGCCTGACTTGGAGATCATGTTTGACTGTGATGATCGACCTGTCGTCAGGTCAAAAGACTTCCGGCAACCAAATGCAGGCCCTCCGCCTGTTTTCCGATACTGTGCCGATGAAGGCAGCTTGGACATTGTGTTCCCAGATTGGTCTTTTTGGGGCTGGGCTGAGACCAATATAAAGCCATGGAAAAAATTATTGCCAAGCATAAAGGAAGGCAATAAAAGAACGAAGTGGAAAGATAGGGTGCCCTATGCTTACTGGAAAGGTAACCCAGCTGTGGCTCCAACCAGGAAAGACCTTCTCAAATGCAATGTTTCAGACCAAAATGACTGGAATACACTCCTATACATACAGAATTGGGAGAAAGAATCCAAAGAAGGGTACAAGCAGTCCAGCTTAGAAGATCAATGCAAGCACAGATACAAAATTTATGTAGAAGGATGGGCATGGTCTGTGAGTGAAAAATACATACTGGCATGTGATTCTATGACCTTATATGTAAACCCCCGTTACTACGATTTCTACATGAGAGGTATGCTACCATTGGAGCACTATTGGCCCATTAGGGACAACAGCAAGTGTACTTCTCTCAAATTTGCTGTGGAATGGGGCAATAATCACACGAAAAAGGCAGAGGCAATGGGGGAGGCAGCAAGCAACTTCATACAAGAAGATCTGAAGATGGACTATGTGTATGACTACATGTTTCATGTACTGAATGAATATGCAAAGCTCTTGAAATTCAAACCGACGATACATCCCAATGCATCGGAACTATGTTCTGAAACAATGGCATGCCCTGCAACTGGCACATGGAAGAAATTCATGGAGGAGTCCATGGTGATGTCTCCTAGTGATGAGATCCCATGTTCTTTGCCTCCTCCATATGATCCTCAAGCTCTTCGTGATTTTCTTGAGAGAAAAGCCAACTCAACTAGACAAGTGGAAGCTTGGGAAAATGAATATTGGCAGAGTTCTAATAAAAAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
Glyco_transf_90

Protein Analysis

524

Amino Acids

61.2

Weight (kDa)

8.53

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_90 PF05686 120 - 513 5.8e-195 Glycosyl transferase family 90
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 826
AccBSI CCGCTC 1 cut(s) 445
AccI GTMKAC 1 cut(s) 573
AccII CGCG 1 cut(s) 451
AciI CCGC 4 cut(s) 102, 445, 459, 671
AclWI GGATC 5 cut(s) 79, 382, 395, 1438, 1466
AcoI YGGCCR 1 cut(s) 404
AcsI RAATTY 5 cut(s) 260, 1008, 1175, 1322, 1403
AcuI CTGAAG 1 cut(s) 1280
AfaI GTAC 3 cut(s) 965, 1165, 1296
AfiI CCNNNNNNNGG 4 cut(s) 662, 859, 960, 1388
AflIII ACRYGT 2 cut(s) 534, 1284
AgsI TTSAA 4 cut(s) 182, 260, 1321, 1327
AhdI GACNNNNNGTC 1 cut(s) 629
AjnI CCWGG 3 cut(s) 498, 577, 869
AloI GAACNNNNNNTCC 2 cut(s) 701, 733
AluBI AGCT 6 cut(s) 705, 857, 978, 1315, 1481, 1532
AluI AGCT 6 cut(s) 705, 857, 978, 1315, 1481, 1532
Alw21I GWGCWC 1 cut(s) 1134
Alw26I GTCTC 2 cut(s) 743, 1434
AlwI GGATC 5 cut(s) 79, 382, 395, 1438, 1466
AoxI GGCC 4 cut(s) 404, 492, 664, 1139
ApeKI GCWGC 4 cut(s) 82, 152, 702, 1232
ApoI RAATTY 5 cut(s) 260, 1008, 1175, 1322, 1403
AseI ATTAAT 1 cut(s) 288
Asp700I GAANNNNTTC 1 cut(s) 1403
AspLEI GCGC 2 cut(s) 451, 453
AspS9I GGNCC 3 cut(s) 456, 665, 1140
AsuHPI GGTGA 1 cut(s) 1435
AvaII GGWCC 1 cut(s) 456
BaeGI GKGCMC 1 cut(s) 831
BamHI GGATCC 1 cut(s) 387
BanI GGYRCC 1 cut(s) 826
Bbv12I GWGCWC 1 cut(s) 1134
BbvI GCAGC 4 cut(s) 94, 139, 714, 1244
BccI CCATC 4 cut(s) 361, 379, 1017, 1258
BceAI ACGGC 2 cut(s) 419, 502
BciT130I CCWGG 3 cut(s) 500, 579, 871
BcoDI GTCTC 2 cut(s) 743, 1434
BfaI CTAG 5 cut(s) 119, 321, 528, 1434, 1518
BglII AGATCT 2 cut(s) 397, 1255
BisI GCNGC 4 cut(s) 83, 153, 703, 1233
BlsI GCNGC 4 cut(s) 84, 154, 704, 1234
Bme1390I CCNGG 3 cut(s) 500, 579, 871
Bme18I GGWCC 1 cut(s) 456
BmeRI GACNNNNNGTC 1 cut(s) 629
BmgT120I GGNCC 3 cut(s) 456, 665, 1140
BmiI GGNNCC 3 cut(s) 389, 828, 864
BmrFI CCNGG 3 cut(s) 500, 579, 871
BmsI GCATC 1 cut(s) 1358
BpmI CTGGAG 2 cut(s) 193, 521
BpuEI CTTGAG 2 cut(s) 1461, 1517
BsaI GGTCTC 1 cut(s) 743
BsaJI CCNNGG 4 cut(s) 407, 577, 764, 1419
BsaXI ACNNNNNCTCC 2 cut(s) 590, 620
Bsc4I CCNNNNNNNGG 4 cut(s) 662, 859, 960, 1388
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 4 cut(s) 845, 917, 1059, 1393
Bse3DI GCAATG 2 cut(s) 898, 1227
BseBI CCWGG 3 cut(s) 500, 579, 871
BseDI CCNNGG 4 cut(s) 407, 577, 764, 1419
BseGI GGATG 2 cut(s) 1028, 1339
BseLI CCNNNNNNNGG 4 cut(s) 662, 859, 960, 1388
BseMI GCAATG 2 cut(s) 898, 1227
BseMII CTCAG 1 cut(s) 738
BseNI ACTGG 4 cut(s) 845, 917, 1059, 1393
BsePI GCGCGC 1 cut(s) 449
BseRI GAGGAG 2 cut(s) 1427, 1452
BseSI GKGCMC 1 cut(s) 831
BseXI GCAGC 4 cut(s) 94, 139, 714, 1244
BseYI CCCAGC 2 cut(s) 741, 853
Bsh1236I CGCG 1 cut(s) 451
BshFI GGCC 4 cut(s) 406, 494, 666, 1141
BshNI GGYRCC 1 cut(s) 826
BsiHKAI GWGCWC 1 cut(s) 1134
BsiSI CCGG 2 cut(s) 168, 649
BslFI GGGAC 4 cut(s) 327, 446, 545, 1163
BslI CCNNNNNNNGG 4 cut(s) 662, 859, 960, 1388
BsmAI GTCTC 2 cut(s) 743, 1434
BsmFI GGGAC 4 cut(s) 327, 446, 545, 1163
BsnI GGCC 4 cut(s) 406, 494, 666, 1141
Bso31I GGTCTC 1 cut(s) 743
Bsp1286I GDGCHC 2 cut(s) 831, 1134
Bsp19I CCATGG 3 cut(s) 407, 764, 1419
BspACI CCGC 4 cut(s) 102, 445, 459, 671
BspANI GGCC 4 cut(s) 406, 494, 666, 1141
BspCNI CTCAG 1 cut(s) 739
BspFNI CGCG 1 cut(s) 451
BspHI TCATGA 1 cut(s) 474
BspLI GGNNCC 3 cut(s) 389, 828, 864
BspPI GGATC 5 cut(s) 79, 382, 395, 1438, 1466
BspQI GCTCTTC 1 cut(s) 1488
BspT107I GGYRCC 1 cut(s) 826
BspTNI GGTCTC 1 cut(s) 743
BsrBI CCGCTC 1 cut(s) 445
BsrDI GCAATG 2 cut(s) 898, 1227
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 4 cut(s) 845, 917, 1059, 1393
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 4 cut(s) 407, 577, 764, 1419
BssHII GCGCGC 1 cut(s) 449
BssNAI GTATAC 1 cut(s) 574
BssT1I CCWWGG 3 cut(s) 407, 764, 1419
Bst1107I GTATAC 1 cut(s) 574
Bst2UI CCWGG 3 cut(s) 500, 579, 871
Bst4CI ACNGT 2 cut(s) 614, 689
Bst6I CTCTTC 2 cut(s) 89, 1488
BstAPI GCANNNNNTGC 1 cut(s) 1382
BstC8I GCNNGC 7 cut(s) 169, 447, 451, 664, 995, 1237, 1378
BstDEI CTNAG 3 cut(s) 566, 747, 979
BstDSI CCRYGG 3 cut(s) 407, 764, 1419
BstEII GGTNACC 1 cut(s) 848
BstF5I GGATG 2 cut(s) 1028, 1339
BstFNI CGCG 1 cut(s) 451
BstHHI GCGC 2 cut(s) 451, 453
BstMAI GTCTC 2 cut(s) 743, 1434
BstMWI GCNNNNNNNGC 3 cut(s) 158, 1138, 1382
BstNI CCWGG 3 cut(s) 500, 579, 871
BstNSI RCATGY 5 cut(s) 369, 538, 1062, 1288, 1380
BstPI GGTNACC 1 cut(s) 848
BstSCI CCNGG 3 cut(s) 498, 577, 869
BstSLI GKGCMC 1 cut(s) 831
BstUI CGCG 1 cut(s) 451
BstV1I GCAGC 4 cut(s) 94, 139, 714, 1244
BstX2I RGATCY 4 cut(s) 387, 397, 1255, 1443
BstYI RGATCY 4 cut(s) 387, 397, 1255, 1443
BstZ17I GTATAC 1 cut(s) 574
BsuRI GGCC 4 cut(s) 406, 494, 666, 1141
BtgI CCRYGG 3 cut(s) 407, 764, 1419
BtsCI GGATG 2 cut(s) 1028, 1339
Cac8I GCNNGC 7 cut(s) 169, 447, 451, 664, 995, 1237, 1378
CciI TCATGA 1 cut(s) 474
CfoI GCGC 2 cut(s) 451, 453
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 3 cut(s) 456, 665, 1140
Csp6I GTAC 3 cut(s) 964, 1164, 1295
CviQI GTAC 3 cut(s) 964, 1164, 1295
DdeI CTNAG 3 cut(s) 566, 747, 979
DriI GACNNNNNGTC 1 cut(s) 629
EaeI YGGCCR 1 cut(s) 404
Eam1104I CTCTTC 2 cut(s) 89, 1488
Eam1105I GACNNNNNGTC 1 cut(s) 629
EarI CTCTTC 2 cut(s) 89, 1488
EciI GGCGGA 1 cut(s) 660
Eco130I CCWWGG 3 cut(s) 407, 764, 1419
Eco147I AGGCCT 1 cut(s) 494
Eco31I GGTCTC 1 cut(s) 743
Eco47I GGWCC 1 cut(s) 456
Eco57I CTGAAG 1 cut(s) 1280
Eco91I GGTNACC 1 cut(s) 848
EcoO109I RGGNCCY 1 cut(s) 665
EcoO65I GGTNACC 1 cut(s) 848
EcoRI GAATTC 1 cut(s) 260
EcoRII CCWGG 3 cut(s) 498, 577, 869
EcoT14I CCWWGG 3 cut(s) 407, 764, 1419
EcoT22I ATGCAT 1 cut(s) 1351
ErhI CCWWGG 3 cut(s) 407, 764, 1419
FaqI GGGAC 4 cut(s) 327, 446, 545, 1163
FauI CCCGC 1 cut(s) 438
FauNDI CATATG 1 cut(s) 1468
FblI GTMKAC 1 cut(s) 573
Fnu4HI GCNGC 4 cut(s) 83, 153, 703, 1233
FokI GGATG 2 cut(s) 1035, 1326
Fsp4HI GCNGC 4 cut(s) 83, 153, 703, 1233
FspBI CTAG 5 cut(s) 119, 321, 528, 1434, 1518
GlaI GCGC 2 cut(s) 450, 452
GluI GCNGC 4 cut(s) 83, 153, 703, 1233
GsaI CCCAGC 2 cut(s) 745, 857
GsuI CTGGAG 2 cut(s) 193, 521
HaeIII GGCC 4 cut(s) 406, 494, 666, 1141
HapII CCGG 2 cut(s) 168, 649
HhaI GCGC 2 cut(s) 451, 453
Hin6I GCGC 2 cut(s) 449, 451
HinP1I GCGC 2 cut(s) 449, 451
HindIII AAGCTT 1 cut(s) 1530
HinfI GANTC 5 cut(s) 188, 423, 950, 1064, 1415
HpaII CCGG 2 cut(s) 168, 649
HphI GGTGA 1 cut(s) 1435
Hpy166II GTNNAC 5 cut(s) 484, 540, 574, 1084, 1164
Hpy188I TCNGA 5 cut(s) 683, 901, 1260, 1354, 1366
Hpy188III TCNNGA 4 cut(s) 475, 1318, 1487, 1496
Hpy8I GTNNAC 5 cut(s) 484, 540, 574, 1084, 1164
Hpy99I CGWCG 1 cut(s) 1336
HpyAV CCTTC 7 cut(s) 133, 359, 692, 788, 890, 953, 1013
HpyCH4III ACNGT 2 cut(s) 614, 689
HpyCH4V TGCA 9 cut(s) 55, 68, 559, 662, 891, 993, 1310, 1349, 1385
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 1138, 1382
HpyF3I CTNAG 3 cut(s) 566, 747, 979
HspAI GCGC 2 cut(s) 449, 451
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
LguI GCTCTTC 1 cut(s) 1488
LmnI GCTCC 3 cut(s) 442, 868, 1129
Lsp1109I GCAGC 4 cut(s) 94, 139, 714, 1244
LweI GCATC 1 cut(s) 1358
MaeI CTAG 5 cut(s) 119, 321, 528, 1434, 1518
MaeIII GTNAC 4 cut(s) 292, 361, 848, 1091
MbiI CCGCTC 1 cut(s) 445
MflI RGATCY 4 cut(s) 387, 397, 1255, 1443
MhlI GDGCHC 2 cut(s) 831, 1134
MluCI AATT 9 cut(s) 183, 260, 285, 773, 937, 1008, 1175, 1322, 1403
MlyI GAGTC 2 cut(s) 182, 1424
MmeI TCCRAC 1 cut(s) 890
MnlI CCTC 8 cut(s) 678, 1106, 1210, 1222, 1405, 1470, 1473, 1485
Mph1103I ATGCAT 1 cut(s) 1351
MroNI GCCGGC 1 cut(s) 167
MroXI GAANNNNTTC 1 cut(s) 1403
MseI TTAA 1 cut(s) 288
MslI CAYNNNNRTG 5 cut(s) 27, 271, 479, 1344, 1424
MspA1I CMGCKG 1 cut(s) 857
MspI CCGG 2 cut(s) 168, 649
MspR9I CCNGG 3 cut(s) 500, 579, 871
MvaI CCWGG 3 cut(s) 500, 579, 871
MvnI CGCG 1 cut(s) 451
MwoI GCNNNNNNNGC 3 cut(s) 158, 1138, 1382
NaeI GCCGGC 1 cut(s) 169
NcoI CCATGG 3 cut(s) 407, 764, 1419
NdeI CATATG 1 cut(s) 1468
NgoMIV GCCGGC 1 cut(s) 167
NlaIV GGNNCC 3 cut(s) 389, 828, 864
NmuCI GTSAC 2 cut(s) 292, 361
NsiI ATGCAT 1 cut(s) 1351
NspI RCATGY 5 cut(s) 369, 538, 1062, 1288, 1380
PaeI GCATGC 1 cut(s) 1380
PagI TCATGA 1 cut(s) 474
PauI GCGCGC 1 cut(s) 449
PceI AGGCCT 1 cut(s) 494
PciI ACATGT 2 cut(s) 534, 1284
PciSI GCTCTTC 1 cut(s) 1488
PdiI GCCGGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 1403
PfeI GAWTC 3 cut(s) 423, 950, 1064
PkrI GCNGC 4 cut(s) 84, 154, 704, 1234
PleI GAGTC 2 cut(s) 182, 1423
PpsI GAGTC 2 cut(s) 182, 1423
PscI ACATGT 2 cut(s) 534, 1284
PshBI ATTAAT 1 cut(s) 288
Psp6I CCWGG 3 cut(s) 498, 577, 869
PspEI GGTNACC 1 cut(s) 848
PspFI CCCAGC 2 cut(s) 741, 853
PspGI CCWGG 3 cut(s) 498, 577, 869
PspN4I GGNNCC 3 cut(s) 389, 828, 864
PspPI GGNCC 3 cut(s) 456, 665, 1140
PsuI RGATCY 4 cut(s) 387, 397, 1255, 1443
PteI GCGCGC 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 857
RsaI GTAC 3 cut(s) 965, 1165, 1296
RsaNI GTAC 3 cut(s) 964, 1164, 1295
RseI CAYNNNNRTG 5 cut(s) 27, 271, 479, 1344, 1424
SapI GCTCTTC 1 cut(s) 1488
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 4 cut(s) 83, 153, 703, 1233
Sau96I GGNCC 3 cut(s) 456, 665, 1140
SchI GAGTC 2 cut(s) 182, 1424
ScrFI CCNGG 3 cut(s) 500, 579, 871
SduI GDGCHC 2 cut(s) 831, 1134
SfaNI GCATC 1 cut(s) 1358
SinI GGWCC 1 cut(s) 456
SmiMI CAYNNNNRTG 5 cut(s) 27, 271, 479, 1344, 1424
SmlI CTYRAG 2 cut(s) 1476, 1496
SmoI CTYRAG 2 cut(s) 1476, 1496
SphI GCATGC 1 cut(s) 1380
Sse9I AATT 9 cut(s) 183, 260, 285, 773, 937, 1008, 1175, 1322, 1403
SseBI AGGCCT 1 cut(s) 494
SsiI CCGC 4 cut(s) 102, 445, 459, 671
SspI AATATT 1 cut(s) 1547
SspMI CTAG 5 cut(s) 119, 321, 528, 1434, 1518
StuI AGGCCT 1 cut(s) 494
StyD4I CCNGG 3 cut(s) 498, 577, 869
StyI CCWWGG 3 cut(s) 407, 764, 1419
TaaI ACNGT 2 cut(s) 614, 689
TaqI TCGA 1 cut(s) 622
TasI AATT 9 cut(s) 183, 260, 285, 773, 937, 1008, 1175, 1322, 1403
TatI WGTACW 2 cut(s) 1163, 1294
TfiI GAWTC 3 cut(s) 423, 950, 1064
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TseFI GTSAC 2 cut(s) 292, 361
TseI GCWGC 4 cut(s) 82, 152, 702, 1232
Tsp45I GTSAC 2 cut(s) 292, 361
TspDTI ATGAA 7 cut(s) 17, 711, 1234, 1280, 1317, 1396, 1557
VpaK11BI GGWCC 1 cut(s) 456
VspI ATTAAT 1 cut(s) 288
XapI RAATTY 5 cut(s) 260, 1008, 1175, 1322, 1403
XceI RCATGY 5 cut(s) 369, 538, 1062, 1288, 1380
XmiI GTMKAC 1 cut(s) 573
XmnI GAANNNNTTC 1 cut(s) 1403
XspI CTAG 5 cut(s) 119, 321, 528, 1434, 1518
Zsp2I ATGCAT 1 cut(s) 1351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.