AT3G61750

Cytochrome b561 and DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013451
Physical Location & Seq
Reverse (-)
22857577 .. 22859669
2093 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61750.2

Sequence Viewer

Length: 1197 bp
ATGAAAACTTTGGTCGGATTTTACATCCTCTGTTTCTTAATCGGACAAGATCTGCCTTTCTTAGCTGCAGATGACGTCAATGTCATAAACGATTCGACCCAGAATCTCTGTTTTGCAAACCGATTATCCGATTTCCTCCCTCCACCGTACAGCAATATCTCCGATAACATGCCCTGTACTCCTCTTTGGAACACGTTCGTCTTACGGTACTCAGAAAACAGAGACAATGTGATGACGATTATAGTATCGGCTTTATACACAACCGGGTGGGTTGGGATTGGATTCTCGAAAGAAGGAAGAATGGTTGGATCAAGCGCGATGATCGGATGGATTTCGAAAAAGGGTCACGCCAAAATCAAACAATACTATCTCCAAGGAACGGAGAGAGACCAAGTTGTGCCGGATCAAGGAGAATTGCAACTACAAAAAGTCCCGCCGGTGGTGGCTCTTCACGGAGCAATGATTTACTTAGCTTTCCAGGTGAAATTCGCCGTTAGAGTTCCTCGGAGAGCTGTCATTCTAGCGTTTAGCACTGCTTATCCTTCCAAGCTAGGCCGTTTGACTAAGCATGATGATAAAACTACAGTCATCGTCGATTTTTCCAAAGCTAGTGGAGCAACCTCCATAAAGACGACAACTTCTACGGAGAAGACAAAACATGGAGTAATGGCGATACTCGGATGGGGTTTCTTACTTCCTGTAGGGGCAATCCTAGCAAGATATCTAAGACATAAAGACCCTCTTTGGTACTATCTTCATATCGGTTTTCAGTTCACGGGCTTTATCTTCGGTTTAGCCGCAGTTATTCTTGGGATTCAGCTTTACAATAGGATCCAGCCGGATATACCTGCGCATCGAGGCATTGGGATCTTTCTTCTAGTCCTTAGCACTCTTCAGGTTTTGGCTTTCTTTGCACGGCCACAGAAGGAGACAAAGATGAGGAGATATTGGAATTGGTATCATCATTGGATTGGGAGGATCTCTCTCTTTTTTGGAGCAGTGAACATTGTTCTTGGAATTCGAATGGCGGATAATGGAGGAGATGGATGGAAAATTGGATATGGATTTGTTCTGTCAGTCACGTTACTTGCTTTTGTTGTTCTTGAAATATTCAGGATTCGTGGCACTATCGGCTCACCATCTTCTCGCAGCCCTCCCTCTTTTGAGACACATCCAAGTTCTAGTACTAGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DOMON

Protein Analysis

398

Amino Acids

44.47

Weight (kDa)

9.76

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOMON PF03351 10 - 87 2.1e-09 DOMON domain
Cytochrom_B561 PF03188 143 - 263 6.3e-06 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013451)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61750 AT3G61750
fragaria_vesca FvH4_7g16430
malus_domestica MD01G1080600.v1.1 MD07G1149500.v1.1
prunus_persica Prupe.2G188200_v2.0.a1
pyrus_communis pycom01g10870 pycom07g14810
rosa_chinensis RchiOBHm_Chr1g0359441
rosa_laevigata RLG00000027869
rosa_multiflora Rmu_ssc0000358.1_g000010
rosa_roxburghii Rroxscaffold_4G00297000
rosa_rugosa Rorug01G0271400
rosa_samantha Rh1AG284700 Rh1BG250700 Rh1CG268800 Rh1DG279800
rosa_wichuraiana Rw1G025290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AatII GACGTC 1 cut(s) 78
Acc16I TGCGCA 1 cut(s) 852
Acc36I ACCTGC 1 cut(s) 856
AccII CGCG 1 cut(s) 317
AciI CCGC 3 cut(s) 434, 798, 1028
AclWI GGATC 6 cut(s) 316, 411, 826, 839, 875, 986
AcoI YGGCCR 1 cut(s) 917
AcsI RAATTY 2 cut(s) 485, 1017
AcuI CTGAAG 1 cut(s) 878
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 5 cut(s) 149, 178, 209, 749, 1186
AfiI CCNNNNNNNGG 3 cut(s) 379, 407, 439
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 1 cut(s) 1106
AhlI ACTAGT 1 cut(s) 1187
AjnI CCWGG 1 cut(s) 477
AluBI AGCT 6 cut(s) 65, 473, 512, 550, 608, 820
AluI AGCT 6 cut(s) 65, 473, 512, 550, 608, 820
Alw26I GTCTC 4 cut(s) 216, 381, 923, 1160
AlwI GGATC 6 cut(s) 316, 411, 826, 839, 875, 986
AoxI GGCC 2 cut(s) 553, 917
ApeKI GCWGC 2 cut(s) 65, 1149
ApoI RAATTY 2 cut(s) 485, 1017
Asp700I GAANNNNTTC 1 cut(s) 194
AspLEI GCGC 2 cut(s) 317, 853
AsuC2I CCSGG 1 cut(s) 265
AsuHPI GGTGA 2 cut(s) 493, 1128
AsuII TTCGAA 2 cut(s) 335, 1021
BamHI GGATCC 1 cut(s) 831
BbsI GAAGAC 1 cut(s) 656
BbvI GCAGC 2 cut(s) 52, 1161
BccI CCATC 5 cut(s) 321, 675, 1037, 1041, 1147
BceAI ACGGC 3 cut(s) 476, 540, 932
BciT130I CCWGG 1 cut(s) 479
BcnI CCSGG 1 cut(s) 265
BcoDI GTCTC 4 cut(s) 216, 381, 923, 1160
BcuI ACTAGT 1 cut(s) 1187
BfaI CTAG 7 cut(s) 521, 551, 609, 713, 878, 1182, 1188
BfmI CTRYAG 3 cut(s) 66, 582, 699
BfuAI ACCTGC 1 cut(s) 856
BglII AGATCT 1 cut(s) 49
BisI GCNGC 3 cut(s) 66, 798, 1150
BlsI GCNGC 3 cut(s) 67, 799, 1151
BmcAI AGTACT 1 cut(s) 1186
Bme1390I CCNGG 2 cut(s) 265, 479
BmiI GGNNCC 1 cut(s) 833
BmrFI CCNGG 2 cut(s) 265, 479
BmsI GCATC 1 cut(s) 862
BpiI GAAGAC 1 cut(s) 656
BplI GAGNNNNNCTC 2 cut(s) 967, 999
Bpu10I CCTNAGC 1 cut(s) 884
Bpu14I TTCGAA 2 cut(s) 335, 1021
BpuMI CCSGG 1 cut(s) 265
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 381
BsaJI CCNNGG 2 cut(s) 373, 503
Bsc4I CCNNNNNNNGG 3 cut(s) 379, 407, 439
Bse118I RCCGGY 1 cut(s) 436
Bse3DI GCAATG 1 cut(s) 465
BseBI CCWGG 1 cut(s) 479
BseDI CCNNGG 2 cut(s) 373, 503
BseGI GGATG 5 cut(s) 24, 332, 686, 1052, 1171
BseLI CCNNNNNNNGG 3 cut(s) 379, 407, 439
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 1 cut(s) 225
BseRI GAGGAG 3 cut(s) 171, 955, 1053
BseXI GCAGC 2 cut(s) 52, 1161
Bsh1236I CGCG 1 cut(s) 317
BshFI GGCC 2 cut(s) 555, 919
BsiSI CCGG 4 cut(s) 264, 401, 437, 839
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 3 cut(s) 379, 407, 439
BsmAI GTCTC 4 cut(s) 216, 381, 923, 1160
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 2 cut(s) 555, 919
Bso31I GGTCTC 1 cut(s) 381
Bsp119I TTCGAA 2 cut(s) 335, 1021
Bsp143I GATC 7 cut(s) 49, 308, 321, 403, 831, 867, 978
BspACI CCGC 3 cut(s) 434, 798, 1028
BspANI GGCC 2 cut(s) 555, 919
BspCNI CTCAG 1 cut(s) 224
BspFNI CGCG 1 cut(s) 317
BspLI GGNNCC 1 cut(s) 833
BspMAI CTGCAG 1 cut(s) 70
BspMI ACCTGC 1 cut(s) 856
BspPI GGATC 6 cut(s) 316, 411, 826, 839, 875, 986
BspQI GCTCTTC 1 cut(s) 453
BspT104I TTCGAA 2 cut(s) 335, 1021
BspTNI GGTCTC 1 cut(s) 381
BsrDI GCAATG 1 cut(s) 465
BsrFI RCCGGY 1 cut(s) 436
BssAI RCCGGY 1 cut(s) 436
BssECI CCNNGG 2 cut(s) 373, 503
BssMI GATC 7 cut(s) 49, 308, 321, 403, 831, 867, 978
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 479
Bst4CI ACNGT 3 cut(s) 147, 207, 586
Bst6I CTCTTC 2 cut(s) 453, 897
BstACI GRCGYC 1 cut(s) 75
BstBI TTCGAA 2 cut(s) 335, 1021
BstDEI CTNAG 6 cut(s) 61, 211, 469, 564, 725, 884
BstF5I GGATG 5 cut(s) 24, 332, 686, 1052, 1171
BstFNI CGCG 1 cut(s) 317
BstHHI GCGC 2 cut(s) 317, 853
BstKTI GATC 7 cut(s) 52, 311, 324, 406, 834, 870, 981
BstMAI GTCTC 4 cut(s) 216, 381, 923, 1160
BstMBI GATC 7 cut(s) 49, 308, 321, 403, 831, 867, 978
BstMWI GCNNNNNNNGC 4 cut(s) 614, 713, 911, 1131
BstNI CCWGG 1 cut(s) 479
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 2 cut(s) 263, 477
BstSFI CTRYAG 3 cut(s) 66, 582, 699
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 2 cut(s) 52, 1161
BstV2I GAAGAC 1 cut(s) 656
BstX2I RGATCY 4 cut(s) 49, 831, 867, 978
BstYI RGATCY 4 cut(s) 49, 831, 867, 978
BsuRI GGCC 2 cut(s) 555, 919
BtgZI GCGATG 1 cut(s) 332
BtsCI GGATG 5 cut(s) 24, 332, 686, 1052, 1171
BtsI GCAGTG 2 cut(s) 531, 1005
BtsIMutI CAGTG 2 cut(s) 531, 1005
BveI ACCTGC 1 cut(s) 856
CfoI GCGC 2 cut(s) 317, 853
Cfr10I RCCGGY 1 cut(s) 436
Csp6I GTAC 5 cut(s) 148, 177, 208, 748, 1185
CspCI CAANNNNNGTGG 2 cut(s) 592, 627
CviAII CATG 3 cut(s) 169, 569, 659
CviQI GTAC 5 cut(s) 148, 177, 208, 748, 1185
DdeI CTNAG 6 cut(s) 61, 211, 469, 564, 725, 884
DpnI GATC 7 cut(s) 51, 310, 323, 405, 833, 869, 980
DpnII GATC 7 cut(s) 49, 308, 321, 403, 831, 867, 978
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 917
Eam1104I CTCTTC 2 cut(s) 453, 897
EarI CTCTTC 2 cut(s) 453, 897
EciI GGCGGA 1 cut(s) 1043
Eco130I CCWWGG 1 cut(s) 373
Eco31I GGTCTC 1 cut(s) 381
Eco32I GATATC 1 cut(s) 722
Eco57I CTGAAG 1 cut(s) 878
EcoRI GAATTC 1 cut(s) 1017
EcoRII CCWGG 1 cut(s) 477
EcoRV GATATC 1 cut(s) 722
EcoT14I CCWWGG 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 3 cut(s) 172, 572, 662
FalI AAGNNNNNCTT 2 cut(s) 726, 758
FaqI GGGAC 1 cut(s) 416
FatI CATG 3 cut(s) 168, 568, 658
FauI CCCGC 1 cut(s) 441
Fnu4HI GCNGC 3 cut(s) 66, 798, 1150
FokI GGATG 5 cut(s) 11, 339, 693, 1059, 1158
Fsp4HI GCNGC 3 cut(s) 66, 798, 1150
FspBI CTAG 7 cut(s) 521, 551, 609, 713, 878, 1182, 1188
FspI TGCGCA 1 cut(s) 852
GlaI GCGC 2 cut(s) 316, 852
GluI GCNGC 3 cut(s) 66, 798, 1150
HaeIII GGCC 2 cut(s) 555, 919
HapII CCGG 4 cut(s) 264, 401, 437, 839
HhaI GCGC 2 cut(s) 317, 853
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 3 cut(s) 172, 572, 662
Hin6I GCGC 2 cut(s) 315, 851
HinP1I GCGC 2 cut(s) 315, 851
HinfI GANTC 5 cut(s) 92, 103, 282, 814, 1117
HpaII CCGG 4 cut(s) 264, 401, 437, 839
HphI GGTGA 2 cut(s) 493, 1128
Hpy166II GTNNAC 2 cut(s) 774, 1003
Hpy188I TCNGA 8 cut(s) 17, 44, 130, 163, 214, 326, 507, 680
Hpy188III TCNNGA 3 cut(s) 286, 1103, 1114
Hpy8I GTNNAC 2 cut(s) 774, 1003
Hpy99I CGWCG 1 cut(s) 596
HpyAV CCTTC 3 cut(s) 287, 552, 919
HpyCH4III ACNGT 3 cut(s) 147, 207, 586
HpyCH4IV ACGT 3 cut(s) 75, 194, 1082
HpyCH4V TGCA 4 cut(s) 68, 116, 418, 914
HpyF10VI GCNNNNNNNGC 4 cut(s) 614, 713, 911, 1131
HpyF3I CTNAG 6 cut(s) 61, 211, 469, 564, 725, 884
HpySE526I ACGT 3 cut(s) 75, 194, 1082
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 3 cut(s) 172, 572, 662
HspAI GCGC 2 cut(s) 315, 851
Kzo9I GATC 7 cut(s) 49, 308, 321, 403, 831, 867, 978
LguI GCTCTTC 1 cut(s) 453
LmnI GCTCC 3 cut(s) 455, 614, 995
Lsp1109I GCAGC 2 cut(s) 52, 1161
LweI GCATC 1 cut(s) 862
MaeI CTAG 7 cut(s) 521, 551, 609, 713, 878, 1182, 1188
MaeII ACGT 3 cut(s) 75, 194, 1082
MaeIII GTNAC 3 cut(s) 344, 1078, 1083
MalI GATC 7 cut(s) 51, 310, 323, 405, 833, 869, 980
MboI GATC 7 cut(s) 49, 308, 321, 403, 831, 867, 978
MboII GAAGA 8 cut(s) 309, 440, 661, 746, 778, 866, 884, 1134
MflI RGATCY 4 cut(s) 49, 831, 867, 978
MluCI AATT 5 cut(s) 413, 485, 952, 1017, 1053
MmeI TCCRAC 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 194
MseI TTAA 1 cut(s) 38
MspI CCGG 4 cut(s) 264, 401, 437, 839
MspR9I CCNGG 2 cut(s) 265, 479
MvaI CCWGG 1 cut(s) 479
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 4 cut(s) 614, 713, 911, 1131
NciI CCSGG 1 cut(s) 265
NdeII GATC 7 cut(s) 49, 308, 321, 403, 831, 867, 978
NlaIII CATG 3 cut(s) 172, 572, 662
NlaIV GGNNCC 1 cut(s) 833
NmuCI GTSAC 2 cut(s) 344, 1078
NsbI TGCGCA 1 cut(s) 852
NspI RCATGY 1 cut(s) 172
NspV TTCGAA 2 cut(s) 335, 1021
PciSI GCTCTTC 1 cut(s) 453
PdmI GAANNNNTTC 1 cut(s) 194
PfeI GAWTC 5 cut(s) 92, 103, 282, 814, 1117
PkrI GCNGC 3 cut(s) 67, 799, 1151
Psp6I CCWGG 1 cut(s) 477
PspGI CCWGG 1 cut(s) 477
PspN4I GGNNCC 1 cut(s) 833
PstI CTGCAG 1 cut(s) 70
PsuI RGATCY 4 cut(s) 49, 831, 867, 978
RsaI GTAC 5 cut(s) 149, 178, 209, 749, 1186
RsaNI GTAC 5 cut(s) 148, 177, 208, 748, 1185
SapI GCTCTTC 1 cut(s) 453
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 3 cut(s) 66, 798, 1150
Sau3AI GATC 7 cut(s) 49, 308, 321, 403, 831, 867, 978
ScaI AGTACT 1 cut(s) 1186
ScrFI CCNGG 2 cut(s) 265, 479
SfaNI GCATC 1 cut(s) 862
SfcI CTRYAG 3 cut(s) 66, 582, 699
SfuI TTCGAA 2 cut(s) 335, 1021
SgrAI CRCCGGYG 1 cut(s) 436
SpeI ACTAGT 1 cut(s) 1187
Sse9I AATT 5 cut(s) 413, 485, 952, 1017, 1053
SsiI CCGC 3 cut(s) 434, 798, 1028
SspI AATATT 1 cut(s) 1110
SspMI CTAG 7 cut(s) 521, 551, 609, 713, 878, 1182, 1188
StyD4I CCNGG 2 cut(s) 263, 477
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 3 cut(s) 147, 207, 586
TaiI ACGT 3 cut(s) 78, 197, 1085
TaqI TCGA 6 cut(s) 95, 287, 335, 594, 856, 1021
TasI AATT 5 cut(s) 413, 485, 952, 1017, 1053
TatI WGTACW 2 cut(s) 176, 1184
TauI GCSGC 1 cut(s) 800
TfiI GAWTC 5 cut(s) 92, 103, 282, 814, 1117
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 2 cut(s) 538, 1005
TseFI GTSAC 2 cut(s) 344, 1078
TseI GCWGC 2 cut(s) 65, 1149
Tsp45I GTSAC 2 cut(s) 344, 1078
TspDTI ATGAA 2 cut(s) 17, 746
TspGWI ACGGA 3 cut(s) 395, 468, 659
TspRI CASTG 2 cut(s) 538, 1005
XapI RAATTY 2 cut(s) 485, 1017
XceI RCATGY 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 194
XspI CTAG 7 cut(s) 521, 551, 609, 713, 878, 1182, 1188
ZraI GACGTC 1 cut(s) 76
ZrmI AGTACT 1 cut(s) 1186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.