Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0013451

Physical Location & Seq

Genomic Coordinates Reverse (-)

51314668 .. 51316433

Gene Structure 1766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG284700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGCGAATTCGGGGACTTGGCTTTTGGTTTTGAGGTTATGTGCTCTTCTCCTTTTCTTGGAGGCCAAGGTTTTTGTTTTGGGTGGTGATGATAGTAATGTCCAGGGTGGTAATACTATAGATGGGTCTGGTGGAGTATCAGAGATTTGTGTTAATGATCTGGCTAGTTTCATGCCACCACCATATGGTAATTCATCTGATATAGTCTGCAGGCCTATTTGGAACACTTTTGTTTTGAGGTACACCCAAACTGAAGATCATGTAATGAACATAATATTATCTGCTGTGTACACCACTGGGTGGGTAGGAATGGGATTTTCCAGAGATGGATTGATGGTTGGTTCAAGTGCCATAGTGGGATGGGTTAATAGAAAAGGCCATGCAAGAATTAAGCAATACTATTTGCAAGGTTCAAAGTCTTCGCGAGTTATACCAGACAAAGGTGAATTGCCACTTACTGGTATTCCTGCTACTGTTGTGCTTCATGGCCCTAGGATTTACTTGGCATTCCAGTTGAAATTCCAAGCTCATCTTTCTCGGCAACCTCTTATCTTGGCCGTTGGAAGCGGTTACCCCAAGCACAACAACCACTTAACGAAACACACCGACAAAACCACCATCAAGTTCGACTTCTCTGCAGGTTCTGCATCTGAGGCACCTAGTGATTTTGGGCAGATGAAGAAGAACCATGGAATATTGGCCATATTTGGATGGGGTATAATCATTCCTTTGGGGGCAATTGTTCCAAGATACTTCAAGCACAAGGACCCCTTGTGGTACTATCTCCATTCAATTATTCAATTTGTGGGATTTGTCATTGGCCTTGCAGCAGTGGTACTTGGACAAAAACTCTATAATAAAATAGACGCCAATTTCCAAACACATAGAGCAATTGGAATCTTTGTTCTTGTGCTTAGTATCCTTCAGATATTGGCATTCTTTCTAAGACCAAGCAAGGATGCCAAGATTAGAAAGTACTGGAATTGGTACCACCACTGGTTTGGAAGGTTTGCAATCTTCTTTGCAGCTGTGAACATAGTTCTGGGGATCAACATTGGAGCTGCAGGCATTGAATGGAAGATTAGTTATGGATTTTTTCTCAGCGTAATTCTTATCGCAGTCATTGTTTTAGAAGTTTTGGCAAGGATGAGGAGGACAGAAAATAAGAATATGCCTCCAAACTTCCAAATGAATCCGGTTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561 DOMON

Protein Analysis

401

Amino Acids

44.65

Weight (kDa)

9.74

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DOMON	PF03351	80 - 143	5.7e-09	DOMON domain
Cytochrom_B561	PF03188	230 - 350	1e-07	Eukaryotic cytochrome b561

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61750 AT3G61750
fragaria_vesca	FvH4_7g16430
malus_domestica	MD01G1080600.v1.1 MD07G1149500.v1.1
prunus_persica	Prupe.2G188200_v2.0.a1
pyrus_communis	pycom01g10870 pycom07g14810
rosa_chinensis	RchiOBHm_Chr1g0359441
rosa_laevigata	RLG00000027869
rosa_multiflora	Rmu_ssc0000358.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297000
rosa_rugosa	Rorug01G0271400
rosa_samantha	Rh1AG284700 Rh1BG250700 Rh1CG268800 Rh1DG279800
rosa_wichuraiana	Rw1G025290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	629
Acc65I	GGTACC	1 cut(s)	987
AccB1I	GGYRCC	2 cut(s)	655, 987
AccB7I	CCANNNNNTGG	3 cut(s)	185, 300, 458
AccII	CGCG	1 cut(s)	424
AciI	CCGC	1 cut(s)	567
AclWI	GGATC	1 cut(s)	1055
AcoI	YGGCCR	2 cut(s)	555, 699
AcsI	RAATTY	2 cut(s)	7, 518
AcuI	CTGAAG	2 cut(s)	273, 908
AcyI	GRCGYC	1 cut(s)	867
AdeI	CACNNNGTG	2 cut(s)	300, 662
AfaI	GTAC	6 cut(s)	242, 290, 779, 837, 977, 989
AfiI	CCNNNNNNNGG	5 cut(s)	58, 185, 300, 440, 458
AgsI	TTSAA	7 cut(s)	345, 414, 517, 757, 792, 800, 1073
AjnI	CCWGG	1 cut(s)	102
AloI	GAACNNNNNNTCC	2 cut(s)	888, 920
AluBI	AGCT	3 cut(s)	527, 1028, 1061
AluI	AGCT	3 cut(s)	527, 1028, 1061
Alw21I	GWGCWC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	1055
AlwNI	CAGNNNCTG	1 cut(s)	644
AoxI	GGCC	7 cut(s)	63, 212, 376, 487, 555, 699, 820
ApeKI	GCWGC	3 cut(s)	827, 1025, 1061
ApoI	RAATTY	2 cut(s)	7, 518
ArsI	GACNNNNNNTTYG	2 cut(s)	7, 39
Asp718I	GGTACC	1 cut(s)	987
AspA2I	CCTAGG	1 cut(s)	491
AspS9I	GGNCC	2 cut(s)	488, 766
AsuHPI	GGTGA	2 cut(s)	98, 455
AvaII	GGWCC	1 cut(s)	766
AvrII	CCTAGG	1 cut(s)	491
BalI	TGGCCA	1 cut(s)	701
BanI	GGYRCC	2 cut(s)	655, 987
BbsI	GAAGAC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	3 cut(s)	839, 1037, 1048
BccI	CCATC	6 cut(s)	116, 320, 328, 354, 626, 705
BceAI	ACGGC	1 cut(s)	542
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BciT130I	CCWGG	1 cut(s)	104
BciVI	GTATCC	1 cut(s)	929
BfaI	CTAG	4 cut(s)	165, 492, 660, 1204
BfmI	CTRYAG	4 cut(s)	117, 208, 636, 1062
BfuAI	ACCTGC	1 cut(s)	629
BfuI	GTATCC	1 cut(s)	929
BisI	GCNGC	3 cut(s)	828, 1026, 1062
BlnI	CCTAGG	1 cut(s)	491
BlsI	GCNGC	3 cut(s)	829, 1027, 1063
BmcAI	AGTACT	1 cut(s)	977
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	766
BmgT120I	GGNCC	2 cut(s)	488, 766
BmiI	GGNNCC	4 cut(s)	657, 768, 989, 1200
BmrFI	CCNGG	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	2 cut(s)	656, 949
BmuI	ACTGGG	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	411
BsaHI	GRCGYC	1 cut(s)	867
BsaJI	CCNNGG	4 cut(s)	66, 103, 491, 688
BsaWI	WCCGGW	1 cut(s)	1195
Bsc4I	CCNNNNNNNGG	5 cut(s)	58, 185, 300, 440, 458
Bse1I	ACTGG	5 cut(s)	301, 463, 511, 983, 1001
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	4 cut(s)	66, 103, 491, 688
BseGI	GGATG	4 cut(s)	365, 716, 964, 1152
BseLI	CCNNNNNNNGG	5 cut(s)	58, 185, 300, 440, 458
BseMII	CTCAG	2 cut(s)	642, 1114
BseNI	ACTGG	5 cut(s)	301, 463, 511, 983, 1001
BseRI	GAGGAG	1 cut(s)	1165
BseXI	GCAGC	3 cut(s)	839, 1037, 1048
Bsh1236I	CGCG	1 cut(s)	424
BshFI	GGCC	7 cut(s)	65, 214, 378, 489, 557, 701, 822
BshNI	GGYRCC	2 cut(s)	655, 987
BsiHKAI	GWGCWC	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	1196
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	5 cut(s)	58, 185, 300, 440, 458
BsmFI	GGGAC	1 cut(s)	28
BsmI	GAATGC	2 cut(s)	506, 935
BsnI	GGCC	7 cut(s)	65, 214, 378, 489, 557, 701, 822
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp1407I	TGTACA	1 cut(s)	288
Bsp143I	GATC	3 cut(s)	157, 256, 1047
Bsp19I	CCATGG	1 cut(s)	688
Bsp68I	TCGCGA	1 cut(s)	424
BspACI	CCGC	1 cut(s)	567
BspANI	GGCC	7 cut(s)	65, 214, 378, 489, 557, 701, 822
BspCNI	CTCAG	2 cut(s)	643, 1113
BspFNI	CGCG	1 cut(s)	424
BspLI	GGNNCC	4 cut(s)	657, 768, 989, 1200
BspMAI	CTGCAG	3 cut(s)	212, 640, 1066
BspMI	ACCTGC	1 cut(s)	629
BspPI	GGATC	1 cut(s)	1055
BspQI	GCTCTTC	1 cut(s)	51
BspT107I	GGYRCC	2 cut(s)	655, 987
BsrGI	TGTACA	1 cut(s)	288
BsrI	ACTGG	5 cut(s)	301, 463, 511, 983, 1001
BssECI	CCNNGG	4 cut(s)	66, 103, 491, 688
BssMI	GATC	3 cut(s)	157, 256, 1047
BssNI	GRCGYC	1 cut(s)	867
BssT1I	CCWWGG	3 cut(s)	66, 491, 688
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	475
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	867
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstAUI	TGTACA	1 cut(s)	288
BstC8I	GCNNGC	2 cut(s)	212, 1066
BstDEI	CTNAG	4 cut(s)	651, 914, 944, 1100
BstDSI	CCRYGG	1 cut(s)	688
BstEII	GGTNACC	1 cut(s)	569
BstF5I	GGATG	4 cut(s)	365, 716, 964, 1152
BstFNI	CGCG	1 cut(s)	424
BstKTI	GATC	3 cut(s)	160, 259, 1050
BstMBI	GATC	3 cut(s)	157, 256, 1047
BstMWI	GCNNNNNNNGC	2 cut(s)	644, 653
BstNI	CCWGG	1 cut(s)	104
BstPI	GGTNACC	1 cut(s)	569
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	4 cut(s)	117, 208, 636, 1062
BstUI	CGCG	1 cut(s)	424
BstV1I	GCAGC	3 cut(s)	839, 1037, 1048
BstV2I	GAAGAC	1 cut(s)	411
BstXI	CCANNNNNNTGG	1 cut(s)	1001
BsuI	GTATCC	1 cut(s)	929
BsuRI	GGCC	7 cut(s)	65, 214, 378, 489, 557, 701, 822
BtgI	CCRYGG	1 cut(s)	688
BtsCI	GGATG	4 cut(s)	365, 716, 964, 1152
BtsI	GCAGTG	1 cut(s)	837
BtsIMutI	CAGTG	3 cut(s)	294, 837, 994
BtuMI	TCGCGA	1 cut(s)	424
BveI	ACCTGC	1 cut(s)	629
Cac8I	GCNNGC	2 cut(s)	212, 1066
CaiI	CAGNNNCTG	1 cut(s)	644
Cfr13I	GGNCC	2 cut(s)	488, 766
CseI	GACGC	1 cut(s)	875
Csp6I	GTAC	6 cut(s)	241, 289, 778, 836, 976, 988
CviAII	CATG	5 cut(s)	172, 260, 380, 485, 689
CviQI	GTAC	6 cut(s)	241, 289, 778, 836, 976, 988
DdeI	CTNAG	4 cut(s)	651, 914, 944, 1100
DpnI	GATC	3 cut(s)	159, 258, 1049
DpnII	GATC	3 cut(s)	157, 256, 1047
DraIII	CACNNNGTG	2 cut(s)	300, 662
EaeI	YGGCCR	2 cut(s)	555, 699
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco130I	CCWWGG	3 cut(s)	66, 491, 688
Eco147I	AGGCCT	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	766
Eco57I	CTGAAG	2 cut(s)	273, 908
Eco91I	GGTNACC	1 cut(s)	569
EcoO109I	RGGNCCY	1 cut(s)	766
EcoO65I	GGTNACC	1 cut(s)	569
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	3 cut(s)	66, 491, 688
ErhI	CCWWGG	3 cut(s)	66, 491, 688
FaeI	CATG	5 cut(s)	175, 263, 383, 488, 692
FalI	AAGNNNNNCTT	6 cut(s)	516, 548, 614, 646, 755, 787
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	5 cut(s)	171, 259, 379, 484, 688
FauNDI	CATATG	1 cut(s)	184
Fnu4HI	GCNGC	3 cut(s)	828, 1026, 1062
FokI	GGATG	4 cut(s)	372, 723, 971, 1159
Fsp4HI	GCNGC	3 cut(s)	828, 1026, 1062
FspBI	CTAG	4 cut(s)	165, 492, 660, 1204
GluI	GCNGC	3 cut(s)	828, 1026, 1062
HaeIII	GGCC	7 cut(s)	65, 214, 378, 489, 557, 701, 822
HapII	CCGG	1 cut(s)	1196
HgaI	GACGC	1 cut(s)	875
Hin1I	GRCGYC	1 cut(s)	867
Hin1II	CATG	5 cut(s)	175, 263, 383, 488, 692
HinfI	GANTC	2 cut(s)	897, 1192
HpaII	CCGG	1 cut(s)	1196
HphI	GGTGA	2 cut(s)	98, 455
Hpy166II	GTNNAC	4 cut(s)	243, 289, 291, 1033
Hpy188I	TCNGA	4 cut(s)	142, 199, 652, 927
Hpy188III	TCNNGA	2 cut(s)	321, 423
Hpy8I	GTNNAC	4 cut(s)	243, 289, 291, 1033
HpyAV	CCTTC	2 cut(s)	932, 999
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4V	TGCA	9 cut(s)	210, 383, 406, 638, 647, 827, 1013, 1025, 1064
HpyF10VI	GCNNNNNNNGC	2 cut(s)	644, 653
HpyF3I	CTNAG	4 cut(s)	651, 914, 944, 1100
Hsp92I	GRCGYC	1 cut(s)	867
Hsp92II	CATG	5 cut(s)	175, 263, 383, 488, 692
KpnI	GGTACC	1 cut(s)	991
Kzo9I	GATC	3 cut(s)	157, 256, 1047
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	1058
Lsp1109I	GCAGC	3 cut(s)	839, 1037, 1048
LweI	GCATC	2 cut(s)	656, 949
MaeI	CTAG	4 cut(s)	165, 492, 660, 1204
MaeIII	GTNAC	1 cut(s)	569
MalI	GATC	3 cut(s)	159, 258, 1049
MboI	GATC	3 cut(s)	157, 256, 1047
MboII	GAAGA	7 cut(s)	38, 266, 411, 691, 694, 1009, 1090
MfeI	CAATTG	2 cut(s)	738, 891
MhlI	GDGCHC	1 cut(s)	46
MlsI	TGGCCA	1 cut(s)	701
MluNI	TGGCCA	1 cut(s)	701
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	8 cut(s)	27, 55, 231, 555, 646, 1143, 1146, 1185
Mox20I	TGGCCA	1 cut(s)	701
MscI	TGGCCA	1 cut(s)	701
MseI	TTAA	4 cut(s)	153, 366, 390, 593
Msp20I	TGGCCA	1 cut(s)	701
MspA1I	CMGCKG	1 cut(s)	1028
MspI	CCGG	1 cut(s)	1196
MspR9I	CCNGG	1 cut(s)	104
MunI	CAATTG	2 cut(s)	738, 891
Mva1269I	GAATGC	2 cut(s)	506, 935
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	424
MwoI	GCNNNNNNNGC	2 cut(s)	644, 653
NcoI	CCATGG	1 cut(s)	688
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	3 cut(s)	157, 256, 1047
NlaIII	CATG	5 cut(s)	175, 263, 383, 488, 692
NlaIV	GGNNCC	4 cut(s)	657, 768, 989, 1200
NmeAIII	GCCGAG	1 cut(s)	517
NruI	TCGCGA	1 cut(s)	424
PceI	AGGCCT	1 cut(s)	214
PciSI	GCTCTTC	1 cut(s)	51
PctI	GAATGC	2 cut(s)	506, 935
PfeI	GAWTC	2 cut(s)	897, 1192
PflMI	CCANNNNNTGG	3 cut(s)	185, 300, 458
PkrI	GCNGC	3 cut(s)	829, 1027, 1063
PpuMI	RGGWCCY	1 cut(s)	766
Psp5II	RGGWCCY	1 cut(s)	766
Psp6I	CCWGG	1 cut(s)	102
PspEI	GGTNACC	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	4 cut(s)	657, 768, 989, 1200
PspPI	GGNCC	2 cut(s)	488, 766
PspPPI	RGGWCCY	1 cut(s)	766
PstI	CTGCAG	3 cut(s)	212, 640, 1066
PstNI	CAGNNNCTG	1 cut(s)	644
PvuII	CAGCTG	1 cut(s)	1028
RruI	TCGCGA	1 cut(s)	424
RsaI	GTAC	6 cut(s)	242, 290, 779, 837, 977, 989
RsaNI	GTAC	6 cut(s)	241, 289, 778, 836, 976, 988
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	4 cut(s)	153, 366, 390, 593
SatI	GCNGC	3 cut(s)	828, 1026, 1062
Sau3AI	GATC	3 cut(s)	157, 256, 1047
Sau96I	GGNCC	2 cut(s)	488, 766
ScaI	AGTACT	1 cut(s)	977
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	2 cut(s)	656, 949
SfcI	CTRYAG	4 cut(s)	117, 208, 636, 1062
SinI	GGWCC	1 cut(s)	766
SseBI	AGGCCT	1 cut(s)	214
SsiI	CCGC	1 cut(s)	567
SspI	AATATT	2 cut(s)	276, 696
SspMI	CTAG	4 cut(s)	165, 492, 660, 1204
StuI	AGGCCT	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	3 cut(s)	66, 491, 688
TaaI	ACNGT	1 cut(s)	475
TaqI	TCGA	1 cut(s)	627
TatI	WGTACW	2 cut(s)	288, 975
TfiI	GAWTC	2 cut(s)	897, 1192
Tru1I	TTAA	4 cut(s)	153, 366, 390, 593
Tru9I	TTAA	4 cut(s)	153, 366, 390, 593
TscAI	CASTG	3 cut(s)	301, 837, 1001
TseI	GCWGC	3 cut(s)	827, 1025, 1061
TspDTI	ATGAA	6 cut(s)	160, 183, 281, 473, 692, 1205
TspRI	CASTG	3 cut(s)	301, 837, 1001
Van91I	CCANNNNNTGG	3 cut(s)	185, 300, 458
VpaK11BI	GGWCC	1 cut(s)	766
XapI	RAATTY	2 cut(s)	7, 518
XcmI	CCANNNNNNNNNTGG	1 cut(s)	998
XmaJI	CCTAGG	1 cut(s)	491
XspI	CTAG	4 cut(s)	165, 492, 660, 1204
ZrmI	AGTACT	1 cut(s)	977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.