Rorug01G0271400

Possible catecholamine-binding domain present in a variety of eukaryotic proteins.

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
38381471 .. 38382399
929 bp
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UTR
Exon/CDS
Intron
Rorug01G0271400.1

Sequence Viewer

Length: 294 bp
ATGCTGTTCTGCGCTGACGAGGCAGCGCTGTGCTTCGATGTCCTTAACCTCTACATGATGACAGTGAGGGATGCTCTAAACTCTGCCTTCGATGAGGAAATGTATGCCGATCTGAAAGTGTTTTTGATGGGTGAAGAGGTTGGGAAGTATCAATGTGCTTACAAGGTGAAGCATGAATGCACAAAATTCAAAGAATTTTGTCTAGCAGGAAATGCTGAAGGATGCTTCAGGGCTTTCCAGAGAGCGAAACATGTGCATGAGGCATTAAAGAGGCAGTTTGAAACTCATTTCTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

97

Amino Acids

11.29

Weight (kDa)

5.76

Isoelectric Point (pI)

30.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013451)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 185, 194
AcuI CTGAAG 2 cut(s) 211, 237
AfeI AGCGCT 1 cut(s) 27
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 2 cut(s) 190, 281
Aor51HI AGCGCT 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 2 cut(s) 185, 194
AspLEI GCGC 2 cut(s) 14, 28
AsuHPI GGTGA 2 cut(s) 143, 178
BbvI GCAGC 1 cut(s) 35
BccI CCATC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BfaI CTAG 2 cut(s) 203, 292
BfoI RGCGCY 1 cut(s) 29
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
BmsI GCATC 2 cut(s) 61, 212
BplI GAGNNNNNCTC 2 cut(s) 58, 90
BseGI GGATG 2 cut(s) 76, 227
BseXI GCAGC 1 cut(s) 35
BsmI GAATGC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 109
BssMI GATC 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 212
BstF5I GGATG 2 cut(s) 76, 227
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 2 cut(s) 14, 28
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 2 cut(s) 20, 212
BstNSI RCATGY 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 35
BtsCI GGATG 2 cut(s) 76, 227
BtsIMutI CAGTG 1 cut(s) 69
CfoI GCGC 2 cut(s) 14, 28
CviAII CATG 4 cut(s) 55, 173, 251, 257
CviJI RGCY 1 cut(s) 233
CviKI_1 RGCY 1 cut(s) 233
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco47III AGCGCT 1 cut(s) 27
Eco57I CTGAAG 2 cut(s) 211, 237
FaeI CATG 4 cut(s) 58, 176, 254, 260
FaiI YATR 5 cut(s) 56, 105, 174, 252, 258
FatI CATG 4 cut(s) 54, 172, 250, 256
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 2 cut(s) 83, 234
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 2 cut(s) 203, 292
GlaI GCGC 2 cut(s) 13, 27
GluI GCNGC 1 cut(s) 24
HaeII RGCGCY 1 cut(s) 29
HhaI GCGC 2 cut(s) 14, 28
Hin1II CATG 4 cut(s) 58, 176, 254, 260
Hin6I GCGC 2 cut(s) 12, 26
HinP1I GCGC 2 cut(s) 12, 26
HphI GGTGA 2 cut(s) 143, 178
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 1 cut(s) 238
HpyAV CCTTC 2 cut(s) 97, 212
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 2 cut(s) 180, 256
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 212
Hsp92II CATG 4 cut(s) 58, 176, 254, 260
HspAI GCGC 2 cut(s) 12, 26
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 3 cut(s) 192, 214, 251
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 2 cut(s) 61, 212
MaeI CTAG 2 cut(s) 203, 292
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 1 cut(s) 146
MluCI AATT 2 cut(s) 185, 194
MnlI CCTC 7 cut(s) 13, 59, 60, 88, 130, 253, 264
MseI TTAA 2 cut(s) 45, 266
MslI CAYNNNNRTG 1 cut(s) 255
Mva1269I GAATGC 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 20, 212
NdeII GATC 1 cut(s) 109
NlaIII CATG 4 cut(s) 58, 176, 254, 260
NspI RCATGY 1 cut(s) 254
PciI ACATGT 1 cut(s) 250
PctI GAATGC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 25
PscI ACATGT 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 2 cut(s) 45, 266
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 1 cut(s) 109
SetI ASST 3 cut(s) 51, 141, 168
SfaNI GCATC 2 cut(s) 61, 212
SmiMI CAYNNNNRTG 1 cut(s) 255
Sse9I AATT 2 cut(s) 185, 194
SspMI CTAG 2 cut(s) 203, 292
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 2 cut(s) 36, 90
TasI AATT 2 cut(s) 185, 194
Tru1I TTAA 2 cut(s) 45, 266
Tru9I TTAA 2 cut(s) 45, 266
TscAI CASTG 1 cut(s) 69
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 1 cut(s) 189
TspRI CASTG 1 cut(s) 69
XapI RAATTY 2 cut(s) 185, 194
XceI RCATGY 1 cut(s) 254
XspI CTAG 2 cut(s) 203, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.